vOTU vOTU-159771

vOTU: vOTU-159771

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-159771
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-02027 → vGENUS-19591 → vOTU-159771
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0092069
Biosample ID	SAMEA3136742
Genome length (bp)	32,477 bps
CheckV completeness	75.21% (Medium-quality)
CDS count	55
CDS density	90.48%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium	Total connections	6	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium	Total connections	14	Host agreement	85.71

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 75.21)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0092069_1	phrog_1129	62.9	3.9e-18	holin	lysis
UniRef90	UHGV-0092069_1	UniRef90_A0A316PMB0	170.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0092069_1	1007096.BAGW01000036_gene2663	130.0	2.57e-38	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0092069_1	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0092069_1	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0092069_2	phrog_4105	75.3	7.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0092069_2	1687.BCOR_0969	55.8	0.00000000909	N/A	N/A
KOfam	UHGV-0092069_3	K21472	64.0	2.7e-18	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	N/A
UniRef90	UHGV-0092069_3	UniRef90_G9RT42	265.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0092069_3	665956.HMPREF1032_02708	265.0	0	N/A	N/A
Pfam	UHGV-0092069_3	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
structural_annotation	UHGV-0092069_3	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0092069_5	PF21253,NF038128,COG5156	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0092069_6	PF11514	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0092069_7	665956.HMPREF1032_03918	108.0	1.32e-24	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-0092069_8	phrog_3287	157.8	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0092069_8	665956.HMPREF1032_03917	738.0	0	N/A	N/A
structural_annotation	UHGV-0092069_8	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0092069_9	phrog_13046	50.9	0.000000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0092069_9	1232449.BAHV02000016_gene1817	111.0	5.8e-28	N/A	N/A
structural_annotation	UHGV-0092069_9	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0092069_10	phrog_371	134.1	7.80001e-40	major head protein	head and packaging
UniRef90	UHGV-0092069_10	UniRef90_UPI001F183EB8	504.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-0092069_10	1226322.HMPREF1545_03848	273.0	0	N/A	N/A
Pfam	UHGV-0092069_10	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0092069_10	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0092069_11	phrog_24113	65.1	8.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0092069_11	1226322.HMPREF1545_03847	60.8	0.000000000567	N/A	N/A
structural_annotation	UHGV-0092069_11	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0092069_12	phrog_35275	71.9	7.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0092069_12	1226322.HMPREF1545_03846	68.6	0.00000000021	N/A	N/A
PHROG	UHGV-0092069_15	phrog_156	233.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0092069_15	693746.OBV_23930	470.0	0	N/A	N/A
structural_annotation	UHGV-0092069_15	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0092069_16	K21523	42.7	0.0000000000029	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0092069_16	phrog_2	102.6	6.3e-30	terminase large subunit	head and packaging
UniRef90	UHGV-0092069_16	UniRef90_UPI001F401ABC	689.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0092069_16	316274.Haur_1384	155.0	6.66e-39	N/A	N/A
Pfam	UHGV-0092069_16	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0092069_16	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0092069_16	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0092069_17	phrog_1233	81.3	1.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0092069_17	1232443.BAIA02000078_gene33	104.0	9.41e-28	N/A	N/A
structural_annotation	UHGV-0092069_17	PF13058	N/A	N/A	N/A	N/A
PHROG	UHGV-0092069_19	phrog_2412	60.9	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0092069_19	1122981.AUME01000026_gene531	53.1	0.000000961	N/A	N/A
UniRef90	UHGV-0092069_21	UniRef90_A0A1Y3RPR4	88.6	6.62e-21	ArdcN domain-containing protein	N/A
UniRef90	UHGV-0092069_23	UniRef90_A0A2K4ZGQ9	63.9	0.0000000000181	DarA_C domain-containing protein	N/A
PHROG	UHGV-0092069_24	phrog_19458	160.7	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0092069_24	UniRef90_A0A7X5DCK0	224.0	0	LPD15 domain-containing protein	N/A
eggNOG-mapper	UHGV-0092069_24	657322.FPR_26770	323.0	0	N/A	N/A
COG	UHGV-0092069_24	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
eggNOG-mapper	UHGV-0092069_25	1121335.Clst_0383	54.7	0.000000203	N/A	N/A
structural_annotation	UHGV-0092069_25	PF04545	N/A	N/A	N/A	N/A
PHROG	UHGV-0092069_26	phrog_2245	97.7	9.5e-29	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0092069_26	UniRef90_A0A4U9RLZ8	78.6	3.29e-16	N/A	N/A
eggNOG-mapper	UHGV-0092069_26	428125.CLOLEP_01814	100.0	3.55e-25	COG NOG14118 non supervised orthologous group	N/A
structural_annotation	UHGV-0092069_26	NF001611,COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-0092069_27	phrog_22543	40.2	0.000000000029	N/A	unknown function
PHROG	UHGV-0092069_31	phrog_23870	51.2	0.000000000000021	N/A	unknown function
UniRef90	UHGV-0092069_31	UniRef90_UPI001C3A10B1	52.4	0.00000475	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0092069_31	1391428.V5KT07_9CAUD	49.7	0.00000331	N/A	N/A
KOfam	UHGV-0092069_33	K00571	175.7	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0092069_33	phrog_67	156.9	0	DNA methyltransferase	other
UniRef90	UHGV-0092069_33	UniRef90_A0A174E7S0	517.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0092069_33	479437.Elen_2608	277.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0092069_33	MTase_II_00107	193.9	0	Type II methyltransferase	RM
Pfam	UHGV-0092069_33	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0092069_33	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0092069_33	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0092069_34	phrog_28782	93.6	1.6e-27	N/A	unknown function
UniRef90	UHGV-0092069_34	UniRef90_UPI0018774E0E	383.0	0	reductase	N/A
eggNOG-mapper	UHGV-0092069_34	1235835.C814_01169	351.0	0	N/A	N/A
COG	UHGV-0092069_34	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
KOfam	UHGV-0092069_36	K01160	55.7	0.0000000000000015	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0092069_36	phrog_34	68.6	1e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0092069_36	UniRef90_UPI0006D84EB7	164.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
COG	UHGV-0092069_36	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0092069_36	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0092069_37	K02314	248.1	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0092069_37	phrog_19	244.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0092069_37	UniRef90_A0A0W7TNB4	536.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0092069_37	665956.HMPREF1032_02618	494.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0092069_37	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0092069_37	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0092069_37	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0092069_37	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0092069_38	phrog_2514	84.1	1.9e-24	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0092069_38	UniRef90_UPI001EE2C20A	101.0	1.49e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0092069_38	665956.HMPREF1032_02617	260.0	0	Phage replisome organizer, N-terminal domain protein	N/A
COG	UHGV-0092069_38	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0092069_38	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0092069_39	K03111	135.8	4.79999e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0092069_39	phrog_44	131.4	6.2e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0092069_39	UniRef90_A0A316PHP0	196.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0092069_39	665956.HMPREF1032_00430	191.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0092069_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0092069_39	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0092069_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0092069_39	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0092069_39	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0092069_40	886882.PPSC2_p0386	87.8	2.02e-20	N/A	N/A
PHROG	UHGV-0092069_41	phrog_7566	90.9	8.6e-27	N/A	unknown function
UniRef90	UHGV-0092069_41	UniRef90_A0A371ATG2	51.6	0.00000284	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0092069_41	693746.OBV_25470	122.0	1.51e-34	N/A	N/A
PHROG	UHGV-0092069_42	phrog_1389	59.7	5.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0092069_42	883156.HMPREF9282_01223	67.4	0.000000000000537	N/A	N/A
structural_annotation	UHGV-0092069_42	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0092069_43	phrog_14970	204.9	0	N/A	unknown function
UniRef90	UHGV-0092069_43	UniRef90_A0A3P6JH63	172.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-0092069_43	469604.HMPREF0946_01110	167.0	0	DNA recombination	N/A
Pfam	UHGV-0092069_43	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0092069_43	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0092069_43	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0092069_45	742735.HMPREF9467_00844	67.0	0.0000000000512	N/A	N/A
PHROG	UHGV-0092069_50	phrog_6401	44.3	0.0000000000021	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0092069_50	UniRef90_K9YFZ3	50.1	0.0000015	DNA binding domain protein, excisionase family	N/A
eggNOG-mapper	UHGV-0092069_50	1449080.JQMV01000006_gene2254	48.1	0.00000173	Helix-turn-helix domain	N/A
Pfam	UHGV-0092069_50	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0092069_50	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
UniRef90	UHGV-0092069_51	UniRef90_UPI001956DCC9	84.0	4.55e-20	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0092069_51	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0092069_52	K22300	43.0	0.0000000000067	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0092069_52	phrog_8	43.9	0.0000000000042	transcriptional regulator	transcription regulation
UniRef90	UHGV-0092069_52	UniRef90_A0A2V2F7D3	214.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0092069_52	1297617.JPJD01000059_gene2644	66.2	0.0000000000249	addiction module antidote protein HigA	N/A
Pfam	UHGV-0092069_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0092069_52	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
PHROG	UHGV-0092069_53	phrog_87	85.7	3.6e-25	metallo-protease	other
UniRef90	UHGV-0092069_53	UniRef90_UPI001966F635	160.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0092069_53	717606.PaecuDRAFT_3093	95.9	3.76e-23	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0092069_53	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0092069_53	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0092069_53	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0092069_55	phrog_14556	44.5	0.0000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0092069_55	1378168.N510_02494	72.4	0.00000000000136	Competence protein ComEC	N/A
COG	UHGV-0092069_55	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0092069	Yes	32,477	52	75	1