vOTU vOTU-159835

vOTU: vOTU-159835

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-159835
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00017 → vSUBFAM-00014 → vGENUS-01267 → vOTU-159835
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900540775
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0200984
Biosample ID	SAMN09781685
Genome length (bp)	43,700 bps
CheckV completeness	72.50% (Medium-quality)
CDS count	80
CDS density	90.51%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp900540775	Total connections	4	Host agreement	75
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 72.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0200984_1	phrog_4303	112.8	1.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0200984_1	665956.HMPREF1032_00666	93.6	8.77e-24	N/A	N/A
PHROG	UHGV-0200984_2	phrog_4291	1179.0	0	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0200984_2	UniRef90_A0A3A9IVX2	1043.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0200984_2	742740.HMPREF9474_02278	1036.0	0	N/A	N/A
Pfam	UHGV-0200984_2	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0200984_2	PF05183	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_3	phrog_3953	193.2	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0200984_3	UniRef90_UPI001D0703DB	253.0	0	N/A	N/A
eggNOG-mapper	UHGV-0200984_3	742740.HMPREF9474_02279	256.0	0	N/A	N/A
Pfam	UHGV-0200984_3	PF10926	N/A	N/A	N/A	DUF2800
structural_annotation	UHGV-0200984_3	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_4	phrog_93	41.2	0.000000000018	endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0200984_4	742740.HMPREF9474_02280	144.0	8.68805e-44	N/A	N/A
structural_annotation	UHGV-0200984_4	PF01870,NF040854,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0200984_5	PF09297	N/A	N/A	N/A	N/A
UniRef90	UHGV-0200984_6	UniRef90_UPI001C025674	75.1	0.0000000000000131	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0200984_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0200984_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0200984_6	PF01381,PF15911,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
Pfam	UHGV-0200984_7	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
PHROG	UHGV-0200984_14	phrog_6721	304.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0200984_14	665956.HMPREF1032_00655	293.0	0	N/A	N/A
structural_annotation	UHGV-0200984_14	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_15	phrog_3878	53.7	0.0000000000000039	N/A	unknown function
PHROG	UHGV-0200984_21	phrog_2152	175.2	0	N/A	unknown function
UniRef90	UHGV-0200984_21	UniRef90_UPI0011C827E1	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-0200984_21	428125.CLOLEP_01358	188.0	0	N/A	N/A
Pfam	UHGV-0200984_21	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-0200984_21	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_23	phrog_19852	62.0	5.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0200984_23	742733.HMPREF9469_05061	53.5	0.0000000048	N/A	N/A
PHROG	UHGV-0200984_29	phrog_62	127.5	6e-38	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0200984_29	UniRef90_A0A4Q5C8W0	570.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0200984_29	742733.HMPREF9469_05062	577.0	0	Helicase conserved C-terminal domain	N/A
COG	UHGV-0200984_29	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0200984_29	PF02399,MF_01821,NF038318,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_31	phrog_36673	49.1	0.000000000000077	N/A	unknown function
KOfam	UHGV-0200984_32	K03427	63.0	4.3e-18	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0200984_32	phrog_5696	303.1	0	N/A	unknown function
UniRef90	UHGV-0200984_32	UniRef90_A0A4Q7P305	291.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0200984_32	742740.HMPREF9474_02301	280.0	0	N-6 DNA Methylase	N/A
Pfam	UHGV-0200984_32	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0200984_32	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0200984_32	PF05185,TIGR00497	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_33	phrog_4787	185.9	0	single strand annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0200984_33	UniRef90_D4P7I8	134.0	6.24e-37	Gp077	N/A
eggNOG-mapper	UHGV-0200984_33	742733.HMPREF9469_05065	172.0	0	N/A	N/A
structural_annotation	UHGV-0200984_33	PF21265,MF_04153	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_35	phrog_4210	1445.8	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0200984_35	UniRef90_A0A372V5Y1	1799.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0200984_35	428125.CLOLEP_01375	1734.0	0	DNA polymerase type-B family	N/A
Pfam	UHGV-0200984_35	PF19263	N/A	N/A	N/A	DUF5906
structural_annotation	UHGV-0200984_35	PF00136,PF09250,MF_04100,TIGR00592,COG0417	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_37	phrog_4678	189.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0200984_37	428125.CLOLEP_01372	211.0	0	N/A	N/A
PHROG	UHGV-0200984_38	phrog_4695	118.9	2.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-0200984_38	742740.HMPREF9474_02307	124.0	4.43e-33	N/A	N/A
PHROG	UHGV-0200984_39	phrog_14968	98.5	2.4e-29	N/A	unknown function
UniRef90	UHGV-0200984_39	UniRef90_A0A3A9JBK4	78.6	2.94e-18	Histidine kinase	N/A
eggNOG-mapper	UHGV-0200984_39	742733.HMPREF9469_05071	80.1	1.21e-19	N/A	N/A
PHROG	UHGV-0200984_42	phrog_2152	296.5	0	N/A	unknown function
UniRef90	UHGV-0200984_42	UniRef90_UPI00156DA7B3	289.0	0	N/A	N/A
eggNOG-mapper	UHGV-0200984_42	411460.RUMTOR_02029	269.0	0	N/A	N/A
Pfam	UHGV-0200984_42	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-0200984_42	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_43	phrog_1485	99.3	4.6e-29	N/A	unknown function
UniRef90	UHGV-0200984_43	UniRef90_A0A2N7WEV6	88.2	2.23e-20	N/A	N/A
eggNOG-mapper	UHGV-0200984_43	1444310.JANV01000096_gene3245	83.2	1.54e-18	N/A	N/A
Pfam	UHGV-0200984_43	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
PHROG	UHGV-0200984_44	phrog_4079	181.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0200984_44	742733.HMPREF9469_05076	171.0	0	N/A	N/A
PHROG	UHGV-0200984_45	phrog_15567	59.3	4.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0200984_45	478749.BRYFOR_08567	55.8	0.00000000173	N/A	N/A
PHROG	UHGV-0200984_46	phrog_4079	56.5	8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0200984_46	428125.CLOLEP_01365	69.7	0.00000000000241	N/A	N/A
structural_annotation	UHGV-0200984_46	PF19880	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0200984_47	1453496.AT03_13425	85.1	5.84e-20	N/A	N/A
PHROG	UHGV-0200984_49	phrog_2152	225.2	0	N/A	unknown function
UniRef90	UHGV-0200984_49	UniRef90_UPI00156E0E4E	211.0	0	N/A	N/A
eggNOG-mapper	UHGV-0200984_49	742740.HMPREF9474_02314	210.0	0	N/A	N/A
Pfam	UHGV-0200984_49	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-0200984_49	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_50	phrog_10740	43.0	0.0000000000085	N/A	unknown function
PHROG	UHGV-0200984_54	phrog_2152	224.3	0	N/A	unknown function
UniRef90	UHGV-0200984_54	UniRef90_UPI0011CA98EE	194.0	0	N/A	N/A
eggNOG-mapper	UHGV-0200984_54	665956.HMPREF1032_00634	184.0	0	N/A	N/A
Pfam	UHGV-0200984_54	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-0200984_54	PF19880	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0200984_61	PF20234,PF09624	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_62	phrog_17256	186.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0200984_62	428125.CLOLEP_01353	168.0	0	N/A	N/A
PHROG	UHGV-0200984_63	phrog_15866	64.2	1.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0200984_63	742740.HMPREF9474_02324	56.6	0.0000000228	N/A	N/A
eggNOG-mapper	UHGV-0200984_65	665956.HMPREF1032_00626	53.5	0.0000000185	N/A	N/A
COG	UHGV-0200984_67	COG1838	N/A	N/A	Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain	N/A
PHROG	UHGV-0200984_69	phrog_11237	154.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0200984_69	478749.BRYFOR_08581	150.0	8.40779e-45	N/A	N/A
PHROG	UHGV-0200984_70	phrog_6058	82.2	3.4e-24	N/A	unknown function
UniRef90	UHGV-0200984_70	UniRef90_A0A4Q7P3C7	127.0	9.73e-37	Prolyl-tRNA synthetase	N/A
eggNOG-mapper	UHGV-0200984_70	411460.RUMTOR_02008	132.0	1.7e-39	N/A	N/A
KOfam	UHGV-0200984_71	K14059	87.2	3e-25	int; integrase	N/A
PHROG	UHGV-0200984_71	phrog_1	134.8	8.1e-40	integrase	integration and excision
UniRef90	UHGV-0200984_71	UniRef90_A0A5B3G8B3	439.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0200984_71	411460.RUMTOR_02457	419.0	0	N/A	N/A
Pfam	UHGV-0200984_71	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0200984_71	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0200984_71	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0200984_71	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_72	phrog_881	82.5	2.8e-24	holin	lysis
UniRef90	UHGV-0200984_72	UniRef90_UPI001D0692FC	101.0	1.08e-26	phage holin	N/A
eggNOG-mapper	UHGV-0200984_72	742740.HMPREF9474_02251	102.0	4.11e-28	Putative phage holin Dp-1	N/A
Pfam	UHGV-0200984_72	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0200984_72	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_73	phrog_4105	90.7	1.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0200984_73	742733.HMPREF9469_05011	123.0	3.65e-35	N/A	N/A
UniRef90	UHGV-0200984_76	UniRef90_A0A1C5MZC0	333.0	0	N/A	N/A
eggNOG-mapper	UHGV-0200984_76	1235802.C823_01049	255.0	0	N/A	N/A
Pfam	UHGV-0200984_76	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0200984_76	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0200984_77	1160721.RBI_I01572	55.5	0.00000526	N/A	N/A
Pfam	UHGV-0200984_77	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0200984_77	PF10651,NF041074	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_78	phrog_1067	390.6	0	minor head protein	head and packaging
UniRef90	UHGV-0200984_78	UniRef90_A0A413DNC1	503.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0200984_78	1160721.RBI_I01574	382.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0200984_78	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0200984_78	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0200984_78	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0200984_78	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_79	phrog_33	78.8	1.2e-22	distal tail protein Dit	tail
UniRef90	UHGV-0200984_79	UniRef90_A0A1C5W6B6	197.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0200984_79	1123263.AUKY01000068_gene490	125.0	1.52e-32	tail component	N/A
COG	UHGV-0200984_79	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0200984_79	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0200984_80	phrog_4372	109.4	2e-36	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0200984_80	742740.HMPREF9474_02262	63.2	0.000000175	phage tail tape measure protein	N/A
COG	UHGV-0200984_80	COG5412	N/A	N/A	Phage-related protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0200984	Yes	43,700	45	73	1