vOTU vOTU-160168

vOTU: vOTU-160168

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-160168
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00118 → vGENUS-00957 → vOTU-160168
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Butyricicoccaceae → Agathobaculum
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1450574
Biosample ID	N/A
Genome length (bp)	27,031 bps
CheckV completeness	60.24% (Medium-quality)
CDS count	52
CDS density	94.88%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Butyricicoccaceae → Agathobaculum	Total connections	92	Host agreement	92.39
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 60.24)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1450574_2	phrog_14970	285.7	0	N/A	unknown function
UniRef90	UHGV-1450574_2	UniRef90_A0A015RRM9	205.0	0	Rad52/22 double-strand break repair family protein	N/A
eggNOG-mapper	UHGV-1450574_2	642492.Clole_0944	213.0	0	double-strand break repair protein	N/A
COG	UHGV-1450574_2	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1450574_2	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1450574_3	phrog_72	59.0	8.1e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1450574_3	UniRef90_A0A2Z4Q9W9	194.0	0	NinB	N/A
eggNOG-mapper	UHGV-1450574_3	445972.ANACOL_01825	112.0	5.75e-29	N/A	N/A
structural_annotation	UHGV-1450574_3	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1450574_4	phrog_59	121.2	5e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1450574_4	UniRef90_A0A380CHV3	126.0	2.7e-33	Putative HNH family endonuclease, phage associated	N/A
eggNOG-mapper	UHGV-1450574_4	568703.LGG_01122	87.8	4.08e-19	NUMOD4 motif	N/A
PADLOC	UHGV-1450574_4	HEase_00016	94.2	2.5e-27	homing endonuclease	RM
Pfam	UHGV-1450574_4	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1450574_4	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1450574_4	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-1450574_5	K07451	46.9	0.00000000000051	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1450574_5	phrog_7370	59.5	4.9e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1450574_5	UniRef90_A0A845MWL0	204.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1450574_5	1232449.BAHV02000016_gene1841	82.0	1.12e-18	HNH nucleases	N/A
Pfam	UHGV-1450574_5	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-1450574_6	K03111	121.1	1.5e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1450574_6	phrog_44	128.2	6.5e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1450574_6	UniRef90_A0A417H728	200.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1450574_6	1203606.HMPREF1526_00987	118.0	2.69e-32	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1450574_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1450574_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1450574_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1450574_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1450574_6	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1450574_7	phrog_2514	84.9	8.3e-25	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1450574_7	UniRef90_A0A2A6ZGI2	80.1	0.0000000000000302	HTH gntR-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1450574_7	742733.HMPREF9469_01845	118.0	1.73e-29	N/A	N/A
structural_annotation	UHGV-1450574_7	PF10771,MF_01177,TIGR01610,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-1450574_9	K01160	46.7	0.00000000000088	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1450574_9	phrog_1682	88.1	1.2e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1450574_9	UniRef90_A0A417H6W1	218.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1450574_9	697281.Mahau_0558	130.0	2.82e-37	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1450574_9	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1450574_9	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1450574_10	K00571	114.7	1e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1450574_10	phrog_67	99.9	1.5e-29	DNA methyltransferase	other
UniRef90	UHGV-1450574_10	UniRef90_A0A2U1CFM2	422.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1450574_10	35241.Q9XJE8_BPTU2	355.0	0	helicase activity	N/A
PADLOC	UHGV-1450574_10	MTase_II_00157	93.1	5.3e-27	Type II methyltransferase	RM
Pfam	UHGV-1450574_10	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-1450574_10	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1450574_11	phrog_757	51.5	0.000000000000015	DNA methyltransferase	other
UniRef90	UHGV-1450574_11	UniRef90_A0A7J2R6L5	66.2	0.000000000000223	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-1450574_11	748224.HMPREF9436_03069	99.4	2.71e-25	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1450574_11	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1450574_12	phrog_757	80.4	2.1e-23	DNA methyltransferase	other
UniRef90	UHGV-1450574_12	UniRef90_UPI001A9B5584	197.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1450574_12	748224.HMPREF9436_03069	144.0	9.45036e-42	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1450574_12	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1450574_14	phrog_599	51.0	0.000000000000028	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1450574_14	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1450574_14	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1450574_14	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1450574_14	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-1450574_15	phrog_599	45.5	0.0000000000015	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1450574_15	UniRef90_A0A3A9EQ73	58.2	0.0000000021	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1450574_15	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-1450574_15	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1450574_15	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1450574_17	phrog_474	111.0	1.6e-32	phosphofructokinase	other
UniRef90	UHGV-1450574_17	UniRef90_A0A2V2FHD6	198.0	0	N/A	N/A
eggNOG-mapper	UHGV-1450574_17	428125.CLOLEP_01367	103.0	1.52e-26	N/A	N/A
Pfam	UHGV-1450574_17	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1450574_17	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-1450574_18	phrog_419	109.1	4.6e-32	N/A	unknown function
UniRef90	UHGV-1450574_18	UniRef90_A0A060QMU0	92.4	1.05e-22	N/A	N/A
eggNOG-mapper	UHGV-1450574_18	1282664.H354_06646	97.8	1.37e-25	N/A	N/A
structural_annotation	UHGV-1450574_18	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1450574_20	phrog_478	126.4	1.2e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1450574_20	UniRef90_R6R5K5	149.0	4.06377e-44	Protein 64 protein	N/A
eggNOG-mapper	UHGV-1450574_20	478749.BRYFOR_08526	145.0	3.08286e-43	N/A	N/A
PHROG	UHGV-1450574_21	phrog_229	120.3	1.5e-35	MazG-like pyrophosphatase	other
UniRef90	UHGV-1450574_21	UniRef90_A0A396QBH7	151.0	1.96182e-44	Nucleotide pyrophosphohydrolase	N/A
eggNOG-mapper	UHGV-1450574_21	202752.JL53_00735	113.0	4.82e-30	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-1450574_21	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-1450574_21	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
PHROG	UHGV-1450574_24	phrog_36	58.2	1.7e-16	transcriptional regulator	transcription regulation
COG	UHGV-1450574_24	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1450574_24	PF07374,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1450574_28	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-1450574_29	phrog_15863	157.5	0	N/A	unknown function
UniRef90	UHGV-1450574_29	UniRef90_A0A417HVZ9	329.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-1450574_29	693746.OBV_01780	161.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1450574_29	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
PHROG	UHGV-1450574_30	phrog_13890	67.4	1.4e-19	N/A	unknown function
UniRef90	UHGV-1450574_30	UniRef90_A0A845MW17	121.0	3.83e-35	Arc family DNA-binding protein	N/A
eggNOG-mapper	UHGV-1450574_30	1507.HMPREF0262_00298	69.7	0.00000000000000322	N/A	N/A
Pfam	UHGV-1450574_30	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc
structural_annotation	UHGV-1450574_30	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-1450574_31	K07474	45.1	0.000000000003	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1450574_31	phrog_51	51.0	0.0000000000000082	terminase small subunit	head and packaging
UniRef90	UHGV-1450574_31	UniRef90_A0A417HVX5	225.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1450574_31	702450.CUW_0530	100.0	1.31e-25	Terminase Small Subunit	N/A
Pfam	UHGV-1450574_31	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1450574_31	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1450574_31	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1450574_32	K06909	224.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1450574_32	phrog_3717	202.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1450574_32	UniRef90_A0A417HVY4	967.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1450574_32	445971.ANASTE_00711	509.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1450574_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1450574_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1450574_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1450574_32	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1450574_33	phrog_156	247.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1450574_33	1519439.JPJG01000060_gene1886	535.0	0	N/A	N/A
structural_annotation	UHGV-1450574_33	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1450574_36	phrog_35275	87.2	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-1450574_36	693746.OBV_23910	99.8	1.24e-21	N/A	N/A
PHROG	UHGV-1450574_37	phrog_24113	49.3	0.000000000000059	N/A	unknown function
structural_annotation	UHGV-1450574_37	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1450574_38	phrog_371	103.8	1.3e-30	major head protein	head and packaging
UniRef90	UHGV-1450574_38	UniRef90_UPI00164C0E21	508.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-1450574_38	1226322.HMPREF1545_03848	278.0	0	N/A	N/A
Pfam	UHGV-1450574_38	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1450574_38	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1450574_39	phrog_13046	53.4	0.0000000000000024	N/A	unknown function
eggNOG-mapper	UHGV-1450574_39	693746.OBV_23880	87.0	2.44e-18	N/A	N/A
structural_annotation	UHGV-1450574_39	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1450574_40	phrog_3287	124.5	9.7e-38	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1450574_40	1232449.BAHV02000016_gene1816	412.0	0	N/A	N/A
structural_annotation	UHGV-1450574_40	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-1450574_41	K16617	76.1	2.3e-22	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-1450574_41	phrog_819	138.9	2.89999e-41	tail protein	tail
eggNOG-mapper	UHGV-1450574_41	1408437.JNJN01000030_gene1051	117.0	2.13e-26	cellulose 1,4-beta-cellobiosidase activity	N/A
Pfam	UHGV-1450574_41	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1450574_41	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-1450574_42	phrog_24451	60.1	3.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-1450574_42	1408437.JNJN01000040_gene189	98.2	9.66e-25	N/A	N/A
PHROG	UHGV-1450574_43	phrog_2310	44.2	0.0000000000019	N/A	unknown function
PHROG	UHGV-1450574_45	phrog_1863	66.5	3.5e-20	N/A	unknown function
UniRef90	UHGV-1450574_45	UniRef90_UPI001F223E8B	85.9	3.37e-20	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1450574_45	1226322.HMPREF1545_04027	77.4	1.22e-17	N/A	N/A
PHROG	UHGV-1450574_46	phrog_297	52.7	0.0000000000000072	holin	lysis
UniRef90	UHGV-1450574_46	UniRef90_A0A417HVY6	167.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-1450574_46	1408437.JNJN01000039_gene392	103.0	5.68e-28	COG COG5546 Small integral membrane protein	N/A
Pfam	UHGV-1450574_46	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1450574_46	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1450574_46	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1450574_46	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-1450574_47	K01447	139.4	3.39997e-41	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1450574_47	phrog_670	145.4	4.30199e-43	endolysin	lysis
UniRef90	UHGV-1450574_47	UniRef90_A0A417HAK3	273.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1450574_47	97138.C820_00251	216.0	0	Ami_2	N/A
Pfam	UHGV-1450574_47	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1450574_47	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1450574_47	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-1450574_48	UniRef90_UPI0004E194C7	75.5	1.21e-16	LuxR C-terminal-related transcriptional regulator	N/A
structural_annotation	UHGV-1450574_48	PF13404,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1450574_50	1408437.JNJN01000043_gene805	111.0	2.06e-30	N/A	N/A
eggNOG-mapper	UHGV-1450574_51	476272.RUMHYD_01953	55.8	0.00000000226	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1450574	Yes	27,031	54	60	1