vOTU vOTU-160354

vOTU: vOTU-160354

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-160354
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-03339 → vOTU-160354
Host lineage	Bacteria → Actinobacteriota
Host range breadth	Phylum
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1480943
Biosample ID	N/A
Genome length (bp)	30,017 bps
CheckV completeness	87.84% (Medium-quality)
CDS count	55
CDS density	94.83%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Actinobacteriota	Total connections	2	Host agreement	50
PHIST-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella intestinalis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1480943_1	K01447	54.4	0.0000000000000027	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1480943_1	phrog_14048	56.8	6e-16	endolysin	lysis
UniRef90	UHGV-1480943_1	UniRef90_A0A2N6TSP6	64.7	0.00000000000811	N-acetylmuramoyl-L-alanine amidase (Fragment)	N/A
eggNOG-mapper	UHGV-1480943_1	1687.BCOR_0967	78.6	4.43e-16	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1480943_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1480943_1	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
UniRef90	UHGV-1480943_2	UniRef90_A0A437UU50	61.2	0.000000000139	Holin	N/A
eggNOG-mapper	UHGV-1480943_2	742742.HMPREF9452_01283	84.7	1.92e-20	Putative phage holin Dp-1	N/A
Pfam	UHGV-1480943_2	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1480943_2	PF16938,COG3237	N/A	N/A	N/A	N/A
PHROG	UHGV-1480943_3	phrog_937	46.8	0.00000000000058	hemolysin	other
eggNOG-mapper	UHGV-1480943_4	1231336.L248_1708	66.2	0.0000000000312	N/A	N/A
KOfam	UHGV-1480943_5	K00986	82.1	7.3e-24	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1480943_5	phrog_1423	174.7	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1480943_5	UniRef90_C4F8I8	565.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-1480943_5	521003.COLINT_02359	565.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-1480943_5	icity0040	66.1	7.5e-19	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-1480943_5	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-1480943_5	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1480943_5	PF00078,TIGR04416,COG3344	N/A	N/A	N/A	N/A
UniRef90	UHGV-1480943_6	UniRef90_UPI001C6A3707	75.9	3.15e-17	N/A	N/A
eggNOG-mapper	UHGV-1480943_6	521003.COLINT_02357	67.0	0.00000000000134	N/A	N/A
Pfam	UHGV-1480943_6	PF19789	N/A	N/A	N/A	DUF6273
eggNOG-mapper	UHGV-1480943_7	742722.HMPREF9463_00260	144.0	6.81031e-42	N/A	N/A
structural_annotation	UHGV-1480943_7	PF05635,TIGR02436	N/A	N/A	N/A	N/A
UniRef90	UHGV-1480943_8	UniRef90_B6GDH0	466.0	0	N/A	N/A
eggNOG-mapper	UHGV-1480943_8	445975.COLSTE_02150	466.0	0	N/A	N/A
Pfam	UHGV-1480943_8	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1480943_8	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1480943_9	phrog_10512	40.2	0.0000000000066	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1480943_9	445975.COLSTE_02151	138.0	7.17e-36	N/A	N/A
Pfam	UHGV-1480943_9	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1480943_9	PF10651,NF040788	N/A	N/A	N/A	N/A
PHROG	UHGV-1480943_11	phrog_12312	420.8	0	virion structural protein	head and packaging
UniRef90	UHGV-1480943_11	UniRef90_A0A7C8FKK1	471.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1480943_11	445975.COLSTE_02153	436.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1480943_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1480943_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1480943_11	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1480943_11	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1480943_12	phrog_33	65.4	1.4e-18	distal tail protein Dit	tail
eggNOG-mapper	UHGV-1480943_12	445975.COLSTE_02154	111.0	4.37e-27	phage tail	N/A
Pfam	UHGV-1480943_12	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1480943_12	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1480943_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1480943_12	PF05709,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1480943_13	phrog_58	317.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1480943_13	742722.HMPREF9463_00254	253.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1480943_13	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1480943_13	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1480943_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1480943_13	PF20155,MF_04138,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1480943_14	phrog_7423	66.1	3.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-1480943_14	1140002.I570_02921	52.4	0.000000487	N/A	N/A
eggNOG-mapper	UHGV-1480943_15	1235792.C808_05346	76.6	1.4e-16	N/A	N/A
PHROG	UHGV-1480943_16	phrog_1407	94.5	7.6e-28	major tail protein	tail
UniRef90	UHGV-1480943_16	UniRef90_A0A437UTX5	245.0	0	Phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-1480943_16	742722.HMPREF9463_00251	225.0	0	Phage tail tube protein	N/A
Pfam	UHGV-1480943_16	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-1480943_16	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
COG	UHGV-1480943_16	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A
structural_annotation	UHGV-1480943_16	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1480943_17	UniRef90_A0A3N0AG57	205.0	0	N/A	N/A
eggNOG-mapper	UHGV-1480943_17	1347392.CCEZ01000005_gene1240	115.0	2.14e-31	N/A	N/A
Pfam	UHGV-1480943_17	PF16807	N/A	N/A	N/A	DUF5072
structural_annotation	UHGV-1480943_17	PF16807,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1480943_18	phrog_5	50.3	0.00000000000006	tail completion or Neck1 protein	connector
UniRef90	UHGV-1480943_18	UniRef90_A0A437UU44	150.0	1.26117e-44	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1480943_18	742722.HMPREF9463_00249	129.0	3.23e-37	N/A	N/A
structural_annotation	UHGV-1480943_18	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1480943_19	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1480943_20	UniRef90_X8HX34	68.9	0.000000000000884	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1480943_20	742722.HMPREF9463_00247	129.0	1.65e-37	N/A	N/A
structural_annotation	UHGV-1480943_20	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-1480943_21	phrog_29	179.7	0	major head protein	head and packaging
UniRef90	UHGV-1480943_21	UniRef90_UPI000931CAC7	458.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1480943_21	742722.HMPREF9463_00246	433.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1480943_21	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1480943_21	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1480943_23	phrog_172	106.8	2.3e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-1480943_23	UniRef90_UPI000930CB63	236.0	0	N/A	N/A
eggNOG-mapper	UHGV-1480943_23	742722.HMPREF9463_00244	170.0	0	N/A	N/A
Pfam	UHGV-1480943_23	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1480943_23	PF14265	N/A	N/A	N/A	N/A
UniRef90	UHGV-1480943_25	UniRef90_UPI0009316548	103.0	5.37e-27	thioredoxin family protein	N/A
COG	UHGV-1480943_25	COG0526	N/A	N/A	Thiol-disulfide isomerase or thioredoxin	N/A
PHROG	UHGV-1480943_26	phrog_115	207.1	0	minor head protein	head and packaging
UniRef90	UHGV-1480943_26	UniRef90_UPI0009F96B95	407.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1480943_26	742722.HMPREF9463_00241	382.0	0	domain, Protein	N/A
Pfam	UHGV-1480943_26	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1480943_26	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1480943_26	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1480943_26	PF04233,TIGR01641	N/A	N/A	N/A	N/A
Pfam	UHGV-1480943_27	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
PHROG	UHGV-1480943_29	phrog_64	356.5	0	portal protein	head and packaging
UniRef90	UHGV-1480943_29	UniRef90_A0A3N0AG66	651.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1480943_29	742722.HMPREF9463_00239	528.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-1480943_29	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1480943_29	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1480943_29	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1480943_30	phrog_38	126.0	2.7e-37	terminase large subunit	head and packaging
UniRef90	UHGV-1480943_30	UniRef90_UPI00166CA12B	432.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1480943_30	742722.HMPREF9463_00238	620.0	0	N/A	N/A
structural_annotation	UHGV-1480943_30	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-1480943_31	phrog_2412	48.6	0.00000000000014	N/A	unknown function
eggNOG-mapper	UHGV-1480943_31	1125712.HMPREF1316_1524	66.2	0.00000000000491	N/A	N/A
PHROG	UHGV-1480943_32	phrog_1897	45.1	0.0000000000014	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-1480943_32	401473.BDP_1459	59.3	0.000000000313	N/A	N/A
eggNOG-mapper	UHGV-1480943_34	358220.C380_09770	52.4	0.00000526	N/A	N/A
PHROG	UHGV-1480943_35	phrog_2302	113.0	1.4e-33	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1480943_35	UniRef90_A0A0B5BQ11	286.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-1480943_35	742722.HMPREF9463_00233	242.0	0	sulfate reduction	N/A
COG	UHGV-1480943_35	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1480943_35	PF01507,MF_00063,TIGR02057,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1480943_36	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1480943_40	UniRef90_UPI001956BBEC	78.6	1.14e-17	N/A	N/A
Pfam	UHGV-1480943_40	PF11171	N/A	N/A	N/A	DUF2958
COG	UHGV-1480943_40	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
PHROG	UHGV-1480943_41	phrog_421	98.5	6.6e-29	N/A	unknown function
UniRef90	UHGV-1480943_41	UniRef90_A0A3N0AGL3	234.0	0	N/A	N/A
eggNOG-mapper	UHGV-1480943_41	742722.HMPREF9463_00227	189.0	0	N/A	N/A
Pfam	UHGV-1480943_41	PF10979	N/A	N/A	N/A	DUF2786
structural_annotation	UHGV-1480943_41	PF10979	N/A	N/A	N/A	N/A
UniRef90	UHGV-1480943_45	UniRef90_A0A437UTS5	92.8	4.8e-21	N/A	N/A
PHROG	UHGV-1480943_46	phrog_843	64.2	1.7e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1480943_46	UniRef90_A0A3N0AG95	145.0	1.76998e-41	Holliday junction resolvase RecU	N/A
Pfam	UHGV-1480943_46	PF03838	N/A	N/A	Recombination protein U	RecU
PHROG	UHGV-1480943_48	phrog_355	41.0	0.000000000022	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1480943_48	UniRef90_UPI0009300156	141.0	1.54003e-41	N/A	N/A
eggNOG-mapper	UHGV-1480943_48	1235794.C811_01363	90.1	9.55e-22	N/A	N/A
Pfam	UHGV-1480943_48	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-1480943_48	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1480943_51	phrog_21525	50.8	0.00000000000003	N/A	unknown function
PHROG	UHGV-1480943_53	phrog_599	49.2	0.00000000000012	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1480943_53	UniRef90_UPI001485678D	135.0	3.8e-40	Lar family restriction alleviation protein	N/A
Pfam	UHGV-1480943_53	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1480943_53	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
COG	UHGV-1480943_53	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1480943	Yes	30,017	65	88	1
UHGV-0167492	No	30,017	65	88	1