vOTU vOTU-160464

vOTU: vOTU-160464

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-160464
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vOTU-160464
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → CAG-791 → CAG-791 sp000431495
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0002225
Biosample ID	SAMEA4766023
Genome length (bp)	33,514 bps
CheckV completeness	87.89% (Medium-quality)
CDS count	48
CDS density	94.81%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → CAG-791 → CAG-791 sp000431495	Total connections	6	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0002225_2	phrog_14030	166.0	0	N/A	unknown function
UniRef90	UHGV-0002225_2	UniRef90_U2W578	207.0	0	Cpl-7 lysozyme protein	N/A
eggNOG-mapper	UHGV-0002225_2	1321782.HMPREF1986_02283	207.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0002225_2	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0002225_2	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0002225_2	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0002225_2	PF05382,PF08230,NF033742	N/A	N/A	N/A	N/A
PHROG	UHGV-0002225_3	phrog_6918	51.1	0.000000000000021	holin	lysis
UniRef90	UHGV-0002225_3	UniRef90_R7N9M5	64.7	0.0000000000405	LL-H family phage holin	N/A
eggNOG-mapper	UHGV-0002225_3	1235792.C808_00574	57.0	0.00000000607	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0002225_3	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
PHROG	UHGV-0002225_5	phrog_37604	93.7	9.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0002225_5	457412.RSAG_01109	84.0	2.7e-18	N/A	N/A
PHROG	UHGV-0002225_9	phrog_1423	85.3	5.7e-25	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002225_9	UniRef90_A0A3D2D981	268.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0002225_9	411459.RUMOBE_01719	273.0	0	reverse transcriptase	N/A
Pfam	UHGV-0002225_9	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0002225_9	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
PHROG	UHGV-0002225_10	phrog_17147	410.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0002225_10	411459.RUMOBE_01720	644.0	0	N/A	N/A
PHROG	UHGV-0002225_11	phrog_19280	46.6	0.00000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0002225_11	1160721.RBI_I01572	53.9	0.00000924	N/A	N/A
Pfam	UHGV-0002225_11	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-0002225_13	phrog_1067	411.4	0	minor head protein	head and packaging
UniRef90	UHGV-0002225_13	UniRef90_A0A3D5L0J3	479.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0002225_13	1160721.RBI_I01574	355.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0002225_13	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0002225_13	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0002225_13	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0002225_14	phrog_33	51.4	0.000000000000027	distal tail protein Dit	tail
UniRef90	UHGV-0002225_14	UniRef90_A0A173Z1X4	129.0	2.77e-33	Phage-related protein	N/A
eggNOG-mapper	UHGV-0002225_14	1123315.AUIP01000014_gene1961	81.3	7.6e-16	tail component	N/A
COG	UHGV-0002225_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0002225_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0002225_15	K10421	43.0	0.00000000000081	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0002225_15	phrog_1533	361.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0002225_15	UniRef90_A0A416P6B8	186.0	2.94273e-44	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0002225_15	1095750.HMPREF9970_2277	305.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0002225_15	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0002225_15	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0002225_15	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0002225_15	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0002225_17	phrog_88	96.3	3.2e-28	major tail protein	tail
eggNOG-mapper	UHGV-0002225_17	33035.JPJF01000039_gene278	67.8	0.0000000000231	N/A	N/A
NCBIFam	UHGV-0002225_17	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0002225_17	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002225_18	498761.HM1_2877	52.4	0.00000238	TIGRFAM phage protein, HK97 gp10 family	N/A
Pfam	UHGV-0002225_18	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0002225_18	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0002225_18	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002225_19	1232446.BAIE02000002_gene829	92.0	1.19e-22	N/A	N/A
structural_annotation	UHGV-0002225_19	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0002225_20	phrog_19734	59.8	5.2e-17	N/A	unknown function
structural_annotation	UHGV-0002225_20	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0002225_22	phrog_10	90.2	2.8e-26	major head protein	head and packaging
UniRef90	UHGV-0002225_22	UniRef90_UPI00040EA8CF	328.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0002225_22	1123263.AUKY01000046_gene469	328.0	0	Phage capsid family	N/A
Pfam	UHGV-0002225_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0002225_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0002225_22	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0002225_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0002225_23	K06904	126.0	4.3e-37	N/A	N/A
PHROG	UHGV-0002225_23	phrog_80	154.8	1.4013e-45	head maturation protease	head and packaging
UniRef90	UHGV-0002225_23	UniRef90_UPI0004220697	196.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0002225_23	1123263.AUKY01000046_gene468	196.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0002225_23	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0002225_23	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0002225_23	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0002225_23	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0002225_25	phrog_12	157.3	0	portal protein	head and packaging
UniRef90	UHGV-0002225_25	UniRef90_UPI000488BE8B	448.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0002225_25	1123263.AUKY01000046_gene467	448.0	0	Portal protein	N/A
Pfam	UHGV-0002225_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0002225_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0002225_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0002225_26	phrog_9	397.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0002225_26	UniRef90_UPI0004231217	676.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0002225_26	1123263.AUKY01000046_gene466	676.0	0	large subunit	N/A
Pfam	UHGV-0002225_26	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0002225_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0002225_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0002225_26	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0002225_27	phrog_1066	101.2	7.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0002225_27	1123263.AUKY01000046_gene465	91.7	2.55e-22	N/A	N/A
structural_annotation	UHGV-0002225_27	PF05119,TIGR01558	N/A	N/A	N/A	N/A
KOfam	UHGV-0002225_28	K07451	46.5	0.00000000000068	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0002225_28	phrog_119	64.0	2.5e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002225_28	UniRef90_A0A843HNQ6	117.0	6.78e-32	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0002225_28	1123263.AUKY01000046_gene464	104.0	9.13e-28	HNH endonuclease	N/A
Pfam	UHGV-0002225_28	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0002225_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0002225_29	phrog_36	56.5	6.1e-16	transcriptional regulator	transcription regulation
Pfam	UHGV-0002225_29	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0002225_29	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0002225_29	PF07374,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0002225_30	K03111	120.9	1.7e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0002225_30	phrog_44	118.9	1.9e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002225_30	UniRef90_R5CH32	306.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0002225_30	1280685.AUKC01000081_gene1299	183.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0002225_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0002225_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0002225_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0002225_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0002225_30	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0002225_31	UniRef90_A0A373CFM5	80.5	1.31e-17	ClpX-type ZB domain-containing protein	N/A
eggNOG-mapper	UHGV-0002225_31	1304866.K413DRAFT_3017	83.6	1.68e-19	N/A	N/A
PHROG	UHGV-0002225_32	phrog_24368	49.0	0.000000000000029	N/A	unknown function
PHROG	UHGV-0002225_33	phrog_15077	69.1	1e-19	N/A	unknown function
UniRef90	UHGV-0002225_33	UniRef90_A0A3A6HZA9	172.0	2.8026e-45	N/A	N/A
eggNOG-mapper	UHGV-0002225_33	411902.CLOBOL_05696	150.0	5.25e-38	N/A	N/A
structural_annotation	UHGV-0002225_33	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0002225_34	phrog_8470	153.1	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0002225_34	UniRef90_A0A1H3WNI3	560.0	0	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-0002225_34	1232443.BAIA02000042_gene2320	102.0	5.28e-20	PcfJ-like protein	N/A
Pfam	UHGV-0002225_34	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0002225_34	PF14284	N/A	N/A	N/A	N/A
UniRef90	UHGV-0002225_35	UniRef90_UPI001C0EE701	62.4	0.00000000197	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-0002225_35	1280698.AUJS01000007_gene1016	68.2	0.00000000000293	N/A	N/A
PHROG	UHGV-0002225_36	phrog_531	48.9	0.00000000000011	Rnase H	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0002225_36	1235793.C809_01903	52.8	0.00000134	RNase H	N/A
COG	UHGV-0002225_36	COG0328	N/A	N/A	Ribonuclease HI	N/A
PHROG	UHGV-0002225_37	phrog_3584	165.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002225_37	UniRef90_A0A1I5LZL1	139.0	9.86e-37	Relaxase/Mobilisation nuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0002225_37	1235800.C819_00515	232.0	0	N/A	N/A
structural_annotation	UHGV-0002225_37	PF11726	N/A	N/A	N/A	N/A
KOfam	UHGV-0002225_43	K07727	42.0	0.000000000022	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0002225_43	UniRef90_A0A844J9T8	53.1	0.000000102	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0002225_43	1293597.BN147_08785	47.4	0.00000256	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0002225_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0002225_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0002225_43	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0002225_44	phrog_2967	55.5	0.0000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0002225_44	UniRef90_UPI001F213CDA	146.0	6.72623e-43	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0002225_44	1235798.C817_00620	104.0	6.56e-27	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0002225_44	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0002225_44	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0002225_44	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0002225_45	phrog_20886	60.8	1.4e-17	N/A	unknown function
UniRef90	UHGV-0002225_45	UniRef90_A0A7X8ZBG7	63.9	0.00000000000678	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0002225_45	1235798.C817_00619	57.0	0.0000000028	N/A	N/A
structural_annotation	UHGV-0002225_45	PF06114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0002225_46	1235835.C814_03388	70.1	0.0000000000134	N/A	N/A
KOfam	UHGV-0002225_47	K06400	397.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0002225_47	phrog_95	393.6	0	integrase	integration and excision
UniRef90	UHGV-0002225_47	UniRef90_UPI001D0E60F6	354.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0002225_47	1203606.HMPREF1526_00251	317.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0002225_47	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0002225_47	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0002225_47	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0002225_47	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0002225_47	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0002225_48	UniRef90_A0A3D4X7H5	50.4	0.000000354	Molecular chaperone GroEL (Fragment)	N/A
eggNOG-mapper	UHGV-0002225_48	1280685.AUKC01000004_gene1693	64.7	0.0000000000096	Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions	N/A
COG	UHGV-0002225_48	COG0459	N/A	N/A	Chaperonin GroEL (HSP60 family)	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0002225	Yes	33,514	52	88	1