vOTU vOTU-160465

vOTU: vOTU-160465

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-160465
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Roseburia → Roseburia sp003470905
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01365 → vGENUS-11247 → vOTU-160465
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0002228
Biosample ID	SAMEA4765883
Genome length (bp)	31,373 bps
CheckV completeness	77.35% (Medium-quality)
CDS count	38
CDS density	93.53%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	12	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Roseburia → Roseburia sp003470905	Total connections	7	Host agreement	71.43

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 77.35)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0002228_1	phrog_21765	42.0	7.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0002228_1	1235793.C809_04661	84.7	0.0000000000000238	N/A	N/A
PHROG	UHGV-0002228_2	phrog_6616	547.8	0	tail protein	tail
UniRef90	UHGV-0002228_2	UniRef90_A0A0J1FXD9	516.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0002228_2	476272.RUMHYD_01992	320.0	0	N/A	N/A
PHROG	UHGV-0002228_3	phrog_1194	70.7	1.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-0002228_3	33035.JPJF01000093_gene2242	150.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0002228_3	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0002228_4	K08757	40.4	0.000000000000037	APOA1; apolipoprotein A-I	N/A
PHROG	UHGV-0002228_4	phrog_1535	271.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0002228_4	UniRef90_A0A1C5PIN9	889.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0002228_4	33035.JPJF01000093_gene2243	492.0	0	phage tail tape measure protein	N/A
COG	UHGV-0002228_4	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0002228_4	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_5	phrog_8355	114.5	2.3e-34	N/A	unknown function
UniRef90	UHGV-0002228_5	UniRef90_UPI001F1300CC	232.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0002228_5	1280692.AUJL01000027_gene2152	113.0	8.77e-31	N/A	N/A
Pfam	UHGV-0002228_5	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0002228_5	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_6	phrog_8300	104.4	6.7e-31	N/A	unknown function
eggNOG-mapper	UHGV-0002228_6	33035.JPJF01000093_gene2245	120.0	2.78e-34	N/A	N/A
structural_annotation	UHGV-0002228_6	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_7	phrog_820	104.5	5.9e-31	major tail protein	tail
eggNOG-mapper	UHGV-0002228_7	33035.JPJF01000093_gene2246	223.0	0	N/A	N/A
structural_annotation	UHGV-0002228_7	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_8	phrog_2595	77.9	1.1e-22	head-tail connector protein	connector
UniRef90	UHGV-0002228_8	UniRef90_UPI00164BAA81	262.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0002228_8	1282664.H354_06686	109.0	7.95e-29	N/A	N/A
Pfam	UHGV-0002228_8	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0002228_8	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_9	phrog_556	49.1	0.000000000000089	minor head protein	head and packaging
eggNOG-mapper	UHGV-0002228_9	742740.HMPREF9474_03509	146.0	1.13505e-43	N/A	N/A
PHROG	UHGV-0002228_10	phrog_8710	147.2	3.50325e-44	N/A	unknown function
eggNOG-mapper	UHGV-0002228_10	742740.HMPREF9474_03508	160.0	0	N/A	N/A
structural_annotation	UHGV-0002228_10	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_11	phrog_541	93.9	1.2e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0002228_11	33035.JPJF01000093_gene2250	168.0	0	N/A	N/A
PHROG	UHGV-0002228_12	phrog_1378	77.0	1.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0002228_12	1280692.AUJL01000027_gene2159	70.1	0.00000000000000568	N/A	N/A
PHROG	UHGV-0002228_13	phrog_422	343.5	0	major head protein	head and packaging
UniRef90	UHGV-0002228_13	UniRef90_A0A3R6PT58	510.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0002228_13	33035.JPJF01000093_gene2252	511.0	0	N/A	N/A
structural_annotation	UHGV-0002228_13	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_14	phrog_2303	151.7	4.2039e-45	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0002228_14	1304866.K413DRAFT_0806	179.0	0	N/A	N/A
PHROG	UHGV-0002228_16	phrog_581	254.7	0	minor head protein	head and packaging
UniRef90	UHGV-0002228_16	UniRef90_UPI00164A2DDC	649.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0002228_16	33035.JPJF01000093_gene2255	485.0	0	N/A	N/A
Pfam	UHGV-0002228_16	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0002228_16	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0002228_16	PF06152,PF03496,NF041404	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_17	phrog_533	291.1	0	portal protein	head and packaging
UniRef90	UHGV-0002228_17	UniRef90_UPI001F14233C	976.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0002228_17	742740.HMPREF9474_03501	534.0	0	N/A	N/A
structural_annotation	UHGV-0002228_17	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0002228_18	K06909	95.4	8e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0002228_18	phrog_29775	40.5	0.000000000047	N/A	unknown function
UniRef90	UHGV-0002228_18	UniRef90_UPI00164A3891	952.0	0	terminase	N/A
eggNOG-mapper	UHGV-0002228_18	394503.Ccel_3050	660.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0002228_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0002228_18	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_19	phrog_309	198.6	0	terminase small subunit	head and packaging
UniRef90	UHGV-0002228_19	UniRef90_UPI00164CAAF8	285.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0002228_19	1232453.BAIF02000011_gene3351	184.0	0	HNH endonuclease	N/A
Pfam	UHGV-0002228_19	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0002228_19	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0002228_19	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_20	phrog_36	61.8	1.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0002228_20	UniRef90_A0A413SPA4	258.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0002228_20	1235798.C817_03486	178.0	0	N/A	N/A
structural_annotation	UHGV-0002228_20	PF02996	N/A	N/A	N/A	N/A
UniRef90	UHGV-0002228_21	UniRef90_A0A413SPC3	155.0	0	N/A	N/A
structural_annotation	UHGV-0002228_21	PF20037	N/A	N/A	N/A	N/A
KOfam	UHGV-0002228_23	K14440	122.1	1.7e-36	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0002228_23	phrog_62	401.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002228_23	UniRef90_A0A3R6DHC9	932.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0002228_23	1120971.AUCA01000043_gene1170	587.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0002228_23	ZorD1_00007	92.4	5.5e-27	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0002228_23	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0002228_23	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0002228_23	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0002228_23	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_24	phrog_93	69.6	4.4e-20	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002228_24	UniRef90_R7N5L7	156.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0002228_24	1117108.PAALTS15_09955	105.0	4.48e-28	VRR_NUC	N/A
structural_annotation	UHGV-0002228_24	PF01974,MF_01490,NF002584	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_25	phrog_256	292.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002228_25	UniRef90_C0D6Z3	272.0	0	Virulence-associated protein E (Fragment)	N/A
eggNOG-mapper	UHGV-0002228_25	1449126.JQKL01000051_gene3184	290.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0002228_25	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0002228_25	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0002228_25	PF05272,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_26	phrog_256	678.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002228_26	UniRef90_A0A413SPC0	1112.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-0002228_26	1449126.JQKL01000051_gene3184	591.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0002228_26	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0002228_26	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0002228_26	PF05272,NF040562,NF011296,COG5545	N/A	N/A	N/A	N/A
KOfam	UHGV-0002228_27	K02334	865.8	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0002228_27	phrog_17	384.1	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002228_27	UniRef90_A0A413SPC4	1314.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0002228_27	1120971.AUCA01000043_gene1177	751.0	0	DNA polymerase A domain	N/A
Pfam	UHGV-0002228_27	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0002228_27	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0002228_27	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_28	phrog_112	201.7	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002228_28	UniRef90_A0A413SP98	511.0	0	N/A	N/A
eggNOG-mapper	UHGV-0002228_28	1449126.JQKL01000006_gene839	237.0	0	N/A	N/A
Pfam	UHGV-0002228_28	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0002228_28	PF10991,MF_04153,NF005241	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_29	phrog_69	320.1	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0002228_29	UniRef90_A0A3R6A5Z3	799.0	0	N/A	N/A
eggNOG-mapper	UHGV-0002228_29	1120746.CCNL01000014_gene2086	374.0	0	Belongs to the helicase family. UvrD subfamily	N/A
Pfam	UHGV-0002228_29	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0002228_29	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0002228_29	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_30	phrog_22695	51.8	0.000000000000022	N/A	unknown function
eggNOG-mapper	UHGV-0002228_30	1089548.KI783301_gene2636	61.6	0.00000000285	N/A	N/A
UniRef90	UHGV-0002228_36	UniRef90_UPI000E52936A	105.0	2.43e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0002228_36	887929.HMP0721_1290	77.8	4.96e-18	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-0002228_36	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0002228_37	K14056	44.9	0.0000000000017	puuR; HTH-type transcriptional regulator, repressor for puuD	N/A
PHROG	UHGV-0002228_37	phrog_8	45.6	0.0000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0002228_37	UniRef90_R5ZAU1	157.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0002228_37	556261.HMPREF0240_01268	107.0	8.1e-29	Helix-turn-helix	N/A
Pfam	UHGV-0002228_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0002228_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0002228_37	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0002228_38	phrog_87	78.1	9.5e-23	metallo-protease	other
UniRef90	UHGV-0002228_38	UniRef90_A0A3R6K8Y6	254.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0002228_38	1347392.CCEZ01000005_gene1204	177.0	0	Zn peptidase	N/A
Pfam	UHGV-0002228_38	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0002228_38	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0002228_38	PF06114,COG2856	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0002228	Yes	31,373	42	77	1