vOTU vOTU-161352

vOTU: vOTU-161352

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-161352
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00020 → vGENUS-00117 → vOTU-161352
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0163639
Biosample ID	SAMN06164837
Genome length (bp)	37,651 bps
CheckV completeness	87.88% (Medium-quality)
CDS count	68
CDS density	93.47%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	643	Host agreement	90.05
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.88)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0163639_2	UniRef90_UPI00164AED9E	87.8	3.12e-20	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0163639_2	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0163639_2	PF13560,NF040522,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163639_6	UniRef90_A0A7M1RTM1	80.9	5.67e-16	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0163639_6	1378168.N510_03079	69.3	0.00000000000562	N/A	N/A
KOfam	UHGV-0163639_7	K07491	78.1	2.2e-22	rayT; REP-associated tyrosine transposase	N/A
PHROG	UHGV-0163639_7	phrog_2577	120.6	8.7e-36	transposase	integration and excision
UniRef90	UHGV-0163639_7	UniRef90_A0A1Y4WHE4	231.0	0	IS200/IS605 family transposase	N/A
eggNOG-mapper	UHGV-0163639_7	457396.CSBG_03451	196.0	0	Transposase	N/A
Pfam	UHGV-0163639_7	PF01797	N/A	N/A	Transposase IS200 like	Y1_Tnp
NCBIFam	UHGV-0163639_7	NF033573.1	N/A	N/A	IS200/IS605 family transposase	N/A
COG	UHGV-0163639_7	COG1943	N/A	N/A	REP element-mobilizing transposase RayT	N/A
KOfam	UHGV-0163639_8	K06400	378.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0163639_8	phrog_95	365.4	0	integrase	integration and excision
UniRef90	UHGV-0163639_8	UniRef90_UPI00189960B8	505.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0163639_8	1235835.C814_00825	412.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0163639_8	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0163639_8	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0163639_8	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0163639_8	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0163639_8	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
Pfam	UHGV-0163639_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0163639_9	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0163639_9	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_10	phrog_10292	74.6	8.2e-22	N/A	unknown function
UniRef90	UHGV-0163639_10	UniRef90_A0A416W984	97.1	3.19e-23	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0163639_10	1198452.Jab_1c20720	80.9	1.17e-17	TM2 domain	N/A
Pfam	UHGV-0163639_10	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0163639_10	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0163639_10	COG2314	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0163639_11	622312.ROSEINA2194_02761	59.3	0.0000000495	NOG18738 non supervised orthologous group	N/A
COG	UHGV-0163639_11	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
structural_annotation	UHGV-0163639_11	PF02805	N/A	N/A	N/A	N/A
KOfam	UHGV-0163639_13	K22300	54.7	0.0000000000000025	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0163639_13	phrog_4	50.0	0.000000000000078	transcriptional repressor	transcription regulation
UniRef90	UHGV-0163639_13	UniRef90_A0A2U1BEG8	119.0	1.9e-32	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0163639_13	1235797.C816_03553	107.0	7.27e-28	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-0163639_13	retron_type_VI_hth_cluster2_1	42.3	0.000000000016	N/A	Retron
Pfam	UHGV-0163639_13	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0163639_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0163639_13	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0163639_16	642492.Clole_0961	69.7	0.00000000000000757	N/A	N/A
structural_annotation	UHGV-0163639_16	PF12286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163639_17	PF10548	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_23	phrog_124	115.8	3.8e-34	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163639_23	UniRef90_A0A2Z4QBI4	394.0	0	AAA domain protein	N/A
eggNOG-mapper	UHGV-0163639_23	445972.ANACOL_00146	221.0	0	AAA domain	N/A
Pfam	UHGV-0163639_23	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0163639_23	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-0163639_23	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163639_24	UniRef90_A0A2Z4QA33	241.0	0	PD-(D/E)XK nuclease	N/A
eggNOG-mapper	UHGV-0163639_24	718252.FP2_01050	128.0	1.84e-34	N/A	N/A
structural_annotation	UHGV-0163639_24	PF10926,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_25	phrog_378	99.1	5.4e-29	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163639_25	UniRef90_UPI001E43F9BA	71.6	0.000000000000791	N/A	N/A
eggNOG-mapper	UHGV-0163639_25	1423732.BALS01000134_gene393	65.9	0.0000000000313	N/A	N/A
structural_annotation	UHGV-0163639_25	PF05037,NF004948	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_26	phrog_5810	73.3	3.5e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0163639_26	UniRef90_R6LWZ9	99.8	7.61e-21	DnaD and phage-associated domain	N/A
eggNOG-mapper	UHGV-0163639_26	742740.HMPREF9474_03117	194.0	0	N/A	N/A
structural_annotation	UHGV-0163639_26	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0163639_28	K00558	156.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0163639_28	phrog_363	244.1	0	DNA methyltransferase	other
UniRef90	UHGV-0163639_28	UniRef90_G4KRB8	338.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0163639_28	693746.OBV_01900	338.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0163639_28	MTase_II_00058	120.6	1e-35	Type II methyltransferase	RM
Pfam	UHGV-0163639_28	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0163639_28	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0163639_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0163639_28	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_30	phrog_3136	131.5	3.2e-39	N/A	unknown function
UniRef90	UHGV-0163639_30	UniRef90_A0A6N7TMC2	126.0	2.14e-33	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0163639_30	693746.OBV_25380	57.4	0.000000216	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0163639_30	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0163639_30	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_31	phrog_38832	40.7	0.000000000000065	N/A	unknown function
eggNOG-mapper	UHGV-0163639_31	665956.HMPREF1032_03087	83.2	6e-18	N/A	N/A
Pfam	UHGV-0163639_32	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0163639_32	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0163639_34	UniRef90_UPI00082EBC63	55.5	0.000000159	Lar family restriction alleviation protein	N/A
PHROG	UHGV-0163639_36	phrog_1770	57.1	3.9e-16	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0163639_36	536233.CLO_1822	155.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0163639_36	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0163639_40	742738.HMPREF9460_02503	94.0	8.37e-24	N/A	N/A
structural_annotation	UHGV-0163639_40	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163639_41	PF10922,MF_00839	N/A	N/A	N/A	N/A
KOfam	UHGV-0163639_42	K07474	105.4	1.1e-30	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0163639_42	phrog_51	113.5	1.6e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0163639_42	UniRef90_A0A396NMY4	130.0	1.98e-36	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0163639_42	476272.RUMHYD_01754	125.0	4.3e-35	Terminase small subunit	N/A
Pfam	UHGV-0163639_42	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0163639_42	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0163639_42	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0163639_43	K06909	131.0	1.3e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0163639_43	phrog_10250	160.8	0	N/A	unknown function
UniRef90	UHGV-0163639_43	UniRef90_UPI0018AC3323	575.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0163639_43	476272.RUMHYD_01756	447.0	0	N/A	N/A
Pfam	UHGV-0163639_43	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0163639_43	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0163639_43	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0163639_43	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_44	phrog_533	313.2	0	portal protein	head and packaging
UniRef90	UHGV-0163639_44	UniRef90_UPI00189D71DB	586.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0163639_44	1232443.BAIA02000078_gene36	560.0	0	N/A	N/A
structural_annotation	UHGV-0163639_44	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_45	phrog_581	287.7	0	minor head protein	head and packaging
UniRef90	UHGV-0163639_45	UniRef90_A0A1C5N7V1	486.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0163639_45	1226322.HMPREF1545_00046	374.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0163639_45	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0163639_45	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0163639_45	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163639_45	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_46	phrog_3675	90.7	9.7e-27	N/A	unknown function
UniRef90	UHGV-0163639_46	UniRef90_UPI001C02868E	104.0	4.38e-27	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0163639_46	1235799.C818_04221	112.0	8.97e-31	YjcQ protein	N/A
Pfam	UHGV-0163639_46	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0163639_46	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_48	phrog_194	98.4	9.4e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0163639_48	UniRef90_UPI00189CE417	174.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0163639_48	1232443.BAIA02000078_gene31	159.0	0	N/A	N/A
Pfam	UHGV-0163639_48	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0163639_48	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_49	phrog_909	58.1	1.2e-16	major head protein	head and packaging
UniRef90	UHGV-0163639_49	UniRef90_K1TUL5	72.8	0.000000000000243	N/A	N/A
eggNOG-mapper	UHGV-0163639_49	1497679.EP56_02915	62.0	0.000000000374	N/A	N/A
Pfam	UHGV-0163639_49	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
structural_annotation	UHGV-0163639_49	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_50	phrog_29	180.0	0	major head protein	head and packaging
UniRef90	UHGV-0163639_50	UniRef90_UPI0004AE1FFD	404.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0163639_50	1232443.BAIA02000078_gene29	404.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0163639_50	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0163639_50	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_51	phrog_541	90.8	1.2e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0163639_51	663278.Ethha_0095	56.2	0.000000031	N/A	N/A
PHROG	UHGV-0163639_52	phrog_3366	100.6	1.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0163639_52	1226322.HMPREF1545_00053	177.0	0	N/A	N/A
structural_annotation	UHGV-0163639_52	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_53	phrog_556	69.1	5.9e-20	minor head protein	head and packaging
UniRef90	UHGV-0163639_53	UniRef90_UPI00195E1497	209.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0163639_53	1226322.HMPREF1545_00054	169.0	0	Minor capsid protein	N/A
Pfam	UHGV-0163639_53	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0163639_53	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_54	phrog_3266	51.8	0.000000000000012	tail completion	connector
eggNOG-mapper	UHGV-0163639_54	1232443.BAIA02000078_gene24	178.0	0	N/A	N/A
structural_annotation	UHGV-0163639_54	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_55	phrog_3099	86.6	3.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0163639_55	1235797.C816_04186	237.0	0	N/A	N/A
structural_annotation	UHGV-0163639_55	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_56	phrog_11299	63.2	4.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0163639_56	693746.OBV_18160	204.0	0	N/A	N/A
structural_annotation	UHGV-0163639_56	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_57	phrog_706	111.0	1.1e-32	N/A	unknown function
UniRef90	UHGV-0163639_57	UniRef90_UPI000682A80B	209.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0163639_57	693746.OBV_18170	196.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0163639_57	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0163639_57	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_58	phrog_806	87.0	1.8e-25	N/A	unknown function
UniRef90	UHGV-0163639_58	UniRef90_UPI00137B5163	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-0163639_58	397290.C810_05150	115.0	1.82e-28	N/A	N/A
Pfam	UHGV-0163639_58	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-0163639_58	PF11611,PF06832,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_59	phrog_1535	104.7	1.10001e-40	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0163639_59	693746.OBV_18190	174.0	3.95026e-42	domain protein	N/A
COG	UHGV-0163639_59	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163639_59	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_60	phrog_1194	66.9	2.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0163639_60	411902.CLOBOL_00125	109.0	5.92e-29	N/A	N/A
structural_annotation	UHGV-0163639_60	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_61	phrog_13879	235.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0163639_61	693746.OBV_18210	382.0	0	N/A	N/A
structural_annotation	UHGV-0163639_61	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0163639_62	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_65	phrog_10898	289.0	0	N/A	unknown function
UniRef90	UHGV-0163639_65	UniRef90_A0A7U3NJT3	191.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0163639_65	717606.PaecuDRAFT_2136	65.1	0.00000000231	S-layer homology domain	N/A
COG	UHGV-0163639_65	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-0163639_65	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0163639_66	phrog_10898	42.0	0.000000000016	N/A	unknown function
structural_annotation	UHGV-0163639_66	PF16408,NF033510	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0163639	Yes	37,651	56	88	1
UHGV-1442034	No	37,651	56	88	1