vOTU vOTU-161558

vOTU: vOTU-161558

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-161558
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus → ERR7803603_bin.84
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-08109 → vOTU-161558
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus → ERR7803603_bin.84
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0025007
Biosample ID	N/A
Genome length (bp)	22,111 bps
CheckV completeness	54.51% (Medium-quality)
CDS count	30
CDS density	96.31%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus → ERR7803603_bin.84	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 54.51)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0025007_1	phrog_1535	68.8	4.2e-20	tail length tape measure protein	tail
UniRef90	UHGV-0025007_1	UniRef90_A0A1C6JI42	349.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0025007_1	1160721.RBI_II00528	390.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0025007_1	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-0025007_1	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_2	phrog_706	141.4	5.4006e-42	N/A	unknown function
UniRef90	UHGV-0025007_2	UniRef90_UPI001B3C82AE	244.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0025007_2	1449050.JNLE01000003_gene3882	209.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0025007_2	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0025007_2	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_3	phrog_11299	111.8	5.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0025007_3	1160721.RBI_II00531	75.5	0.00000000000000271	N/A	N/A
structural_annotation	UHGV-0025007_3	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_4	phrog_3099	165.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0025007_4	1449050.JNLE01000003_gene3884	195.0	0	N/A	N/A
structural_annotation	UHGV-0025007_4	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_5	phrog_3266	102.4	3e-30	tail completion	connector
eggNOG-mapper	UHGV-0025007_5	1449050.JNLE01000003_gene3885	130.0	5.8e-37	N/A	N/A
structural_annotation	UHGV-0025007_5	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_6	phrog_556	83.1	2.5e-24	minor head protein	head and packaging
eggNOG-mapper	UHGV-0025007_6	641112.ACOK01000073_gene2898	55.5	0.0000000314	Minor capsid protein	N/A
Pfam	UHGV-0025007_6	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0025007_6	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025007_7	1069534.LRC_07300	79.7	1.04e-16	N/A	N/A
PHROG	UHGV-0025007_8	phrog_137	77.5	1.4e-22	head-tail adaptor Ad1	connector
UniRef90	UHGV-0025007_8	UniRef90_R6C7E8	139.0	5.56e-40	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0025007_8	908337.HMPREF9257_0536	108.0	1.53e-28	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0025007_8	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0025007_8	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_9	phrog_32396	128.9	1.7e-38	N/A	unknown function
UniRef90	UHGV-0025007_9	UniRef90_UPI001C38B0D8	367.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0025007_9	706433.HMPREF9430_01265	368.0	0	Phage capsid family	N/A
Pfam	UHGV-0025007_9	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0025007_9	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0025007_9	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_10	phrog_233	77.4	3.2e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-0025007_10	UniRef90_A0A373VN88	115.0	4.08e-30	N/A	N/A
eggNOG-mapper	UHGV-0025007_10	1423775.BAMN01000011_gene605	76.6	8.44e-16	N/A	N/A
structural_annotation	UHGV-0025007_10	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_11	phrog_17688	349.0	0	N/A	unknown function
UniRef90	UHGV-0025007_11	UniRef90_A0A3C2BAA2	846.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0025007_11	665950.HMPREF1025_02532	558.0	0	phage terminase, large subunit	N/A
COG	UHGV-0025007_11	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0025007_11	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_12	phrog_338	93.8	2.2e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025007_12	UniRef90_A0A3C2BA80	212.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0025007_12	1280698.AUJS01000007_gene1032	163.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-0025007_12	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0025007_12	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0025007_12	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_13	phrog_1048	108.9	6.6e-32	N/A	unknown function
UniRef90	UHGV-0025007_13	UniRef90_A0A3C2BA76	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-0025007_13	1445809.A0A0A7AQX0_9CAUD	127.0	2.01e-37	N/A	N/A
Pfam	UHGV-0025007_13	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0025007_13	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0025007_13	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_17	phrog_2494	134.5	7.1e-40	minor head protein	head and packaging
eggNOG-mapper	UHGV-0025007_17	908337.HMPREF9257_0543	117.0	3.37e-27	N/A	N/A
PHROG	UHGV-0025007_18	phrog_104	252.1	0	portal protein	head and packaging
UniRef90	UHGV-0025007_18	UniRef90_A0A373V3S0	546.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0025007_18	1232446.BAIE02000011_gene1602	478.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0025007_18	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_19	phrog_36	55.5	7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0025007_19	UniRef90_A0A7X6CWS4	60.1	0.0000000266	N/A	N/A
eggNOG-mapper	UHGV-0025007_19	1127695.HMPREF9163_00372	67.4	0.00000000000735	sigma factor activity	N/A
COG	UHGV-0025007_19	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
PHROG	UHGV-0025007_20	phrog_424	86.4	3e-25	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0025007_20	693746.OBV_43240	475.0	0	N/A	N/A
COG	UHGV-0025007_20	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0025007_20	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0025007_21	K01160	62.3	1.2e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0025007_21	phrog_140	104.7	8.2e-31	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025007_21	UniRef90_A0A3D5KWI4	158.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0025007_21	641112.ACOK01000073_gene2878	177.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0025007_21	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0025007_21	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0025007_21	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0025007_22	K07505	358.7	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0025007_22	phrog_2597	1133.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025007_22	UniRef90_A0A3C0IIQ3	993.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0025007_22	641112.ACOK01000073_gene2877	1233.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0025007_22	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0025007_22	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0025007_22	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0025007_22	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0025007_23	K17677	355.3	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0025007_23	phrog_16	298.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025007_23	UniRef90_R7GUH4	802.0	0	Helicase C-terminal domain protein	N/A
eggNOG-mapper	UHGV-0025007_23	641112.ACOK01000073_gene2876	911.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0025007_23	mREase_IV_00005	134.5	9.39999e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0025007_23	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0025007_23	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0025007_23	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0025007_23	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_24	phrog_2698	178.7	0	N/A	unknown function
UniRef90	UHGV-0025007_24	UniRef90_UPI000F54335B	134.0	6.96e-37	N/A	N/A
eggNOG-mapper	UHGV-0025007_24	641112.ACOK01000073_gene2875	232.0	0	N/A	N/A
structural_annotation	UHGV-0025007_24	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_25	phrog_124	187.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025007_25	UniRef90_A0A831TM47	310.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0025007_25	641112.ACOK01000073_gene2874	507.0	0	AAA domain	N/A
Pfam	UHGV-0025007_25	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0025007_25	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0025007_26	K03546	65.3	7e-19	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0025007_26	phrog_1499	456.0	0	N/A	unknown function
UniRef90	UHGV-0025007_26	UniRef90_A0A3C0II26	521.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-0025007_26	641112.ACOK01000073_gene2873	626.0	0	domain protein	N/A
Pfam	UHGV-0025007_26	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0025007_26	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0025007_26	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0025007_27	phrog_15609	92.4	5.1e-27	N/A	unknown function
UniRef90	UHGV-0025007_27	UniRef90_A0A373SLQ6	171.0	0	N/A	N/A
eggNOG-mapper	UHGV-0025007_27	641112.ACOK01000073_gene2872	115.0	7.54e-28	N/A	N/A
structural_annotation	UHGV-0025007_27	PF11300,NF033725	N/A	N/A	N/A	N/A
Pfam	UHGV-0025007_30	PF10552	N/A	N/A	ORF6C domain	ORF6C

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0025007	Yes	22,111	38	55	1