vOTU vOTU-162271

vOTU: vOTU-162271

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-162271
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-01855 → vGENUS-02912 → vOTU-162271
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2080295
Biosample ID	N/A
Genome length (bp)	42,325 bps
CheckV completeness	89.00% (Medium-quality)
CDS count	54
CDS density	89.75%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	67	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	572	Host agreement	81.47

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2080295_1	phrog_26285	82.3	5.9e-24	N/A	unknown function
UniRef90	UHGV-2080295_1	UniRef90_A0A7X7EHC2	111.0	1.31e-29	Relaxase	N/A
eggNOG-mapper	UHGV-2080295_1	1120746.CCNL01000010_gene1292	136.0	1.41e-36	relaxase mobilization nuclease domain protein	N/A
COG	UHGV-2080295_1	COG3843	N/A	N/A	Type IV secretory pathway, VirD2 component (relaxase)	N/A
UniRef90	UHGV-2080295_2	UniRef90_A0A3A1XJE8	64.3	0.00000000000353	AAA family ATPase (Fragment)	N/A
eggNOG-mapper	UHGV-2080295_2	411461.DORFOR_03174	87.8	1.05e-19	Putative DNA-binding domain	N/A
Pfam	UHGV-2080295_2	PF21247	N/A	N/A	Filamentation induced by cAMP protein Fic-like, C-terminal domain	Fic-like_C
COG	UHGV-2080295_2	COG2865	N/A	N/A	Predicted transcriptional regulator, contains HTH domain	N/A
eggNOG-mapper	UHGV-2080295_3	552398.HMPREF0866_02719	117.0	1.69e-33	N/A	N/A
UniRef90	UHGV-2080295_4	UniRef90_A0A1Q6JRF0	161.0	0	Succinate dehydrogenase	N/A
eggNOG-mapper	UHGV-2080295_4	663278.Ethha_1912	76.3	2.74e-16	N/A	N/A
AcrCatalog	UHGV-2080295_4	cluster_6684	65.1	2.06e-16	NA	N/A
Pfam	UHGV-2080295_4	PF18956	N/A	N/A	N/A	DUF5699
KOfam	UHGV-2080295_5	K23779	50.8	0.000000000000039	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-2080295_5	phrog_3	47.9	0.00000000000052	transcriptional repressor	transcription regulation
UniRef90	UHGV-2080295_5	UniRef90_UPI001D0F3786	219.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2080295_5	411471.SUBVAR_07015	159.0	0	N/A	N/A
Pfam	UHGV-2080295_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2080295_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2080295_5	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-2080295_6	UniRef90_UPI0019671B18	82.4	2.72e-19	transcriptional regulator	N/A
eggNOG-mapper	UHGV-2080295_6	929506.CbC4_1187	56.6	0.000000000592	N/A	N/A
structural_annotation	UHGV-2080295_6	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_11	phrog_310	355.3	0	transposase	integration and excision
UniRef90	UHGV-2080295_11	UniRef90_A0A6N8H399	1124.0	0	MerR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2080295_11	411471.SUBVAR_07010	1014.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-2080295_11	TnsB_0_V-K	46.0	0.00000000000061	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-2080295_11	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-2080295_11	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-2080295_11	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-2080295_12	K07132	114.4	9.9e-34	MuB; ATP-dependent target DNA activator	N/A
PHROG	UHGV-2080295_12	phrog_296	151.2	8.40779e-45	DNA transposition protein	integration and excision
UniRef90	UHGV-2080295_12	UniRef90_A0A6N8H4X2	542.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-2080295_12	411471.SUBVAR_07009	520.0	0	AAA domain	N/A
Pfam	UHGV-2080295_12	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-2080295_12	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
PHROG	UHGV-2080295_14	phrog_5671	93.9	1.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-2080295_14	293826.Amet_0399	108.0	1.86e-28	N/A	N/A
PHROG	UHGV-2080295_15	phrog_491	98.6	5.9e-29	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2080295_15	UniRef90_D1PRH7	223.0	0	Putative bacteriophage Mu Gam like protein	N/A
eggNOG-mapper	UHGV-2080295_15	411471.SUBVAR_07006	223.0	0	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-2080295_15	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
COG	UHGV-2080295_15	COG4396	N/A	N/A	Mu-like prophage host-nuclease inhibitor protein Gam	N/A
structural_annotation	UHGV-2080295_15	PF07352,COG4396	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_17	phrog_286	69.1	8e-20	N/A	unknown function
UniRef90	UHGV-2080295_17	UniRef90_A0A6N8H086	258.0	0	Regulatory protein GemA	N/A
eggNOG-mapper	UHGV-2080295_17	411471.SUBVAR_07005	225.0	0	N/A	N/A
Pfam	UHGV-2080295_17	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-2080295_17	PF06252	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_18	phrog_836	55.4	4.2e-16	late transcriptional activator	transcription regulation
UniRef90	UHGV-2080295_18	UniRef90_A0A6N8H2N1	196.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-2080295_18	411471.SUBVAR_07004	135.0	4.73e-40	Mor transcription activator	N/A
Pfam	UHGV-2080295_18	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-2080295_18	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-2080295_18	PF08765,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_19	phrog_462	45.7	0.0000000000000013	lipoprotein	other
eggNOG-mapper	UHGV-2080295_19	411471.SUBVAR_07003	99.4	4.55e-25	N/A	N/A
PHROG	UHGV-2080295_20	phrog_25462	97.8	7.4e-29	N/A	unknown function
UniRef90	UHGV-2080295_20	UniRef90_A0A6N8H1D3	180.0	0	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-2080295_20	742733.HMPREF9469_02885	87.8	5.34e-21	N/A	N/A
structural_annotation	UHGV-2080295_20	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_21	phrog_426	95.5	6.8e-28	terminase small subunit	head and packaging
UniRef90	UHGV-2080295_21	UniRef90_A0A6N8H2N8	363.0	0	N/A	N/A
eggNOG-mapper	UHGV-2080295_21	411471.SUBVAR_07001	316.0	0	N/A	N/A
Pfam	UHGV-2080295_21	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-2080295_21	PF11985	N/A	N/A	N/A	N/A
KOfam	UHGV-2080295_22	K02601	60.0	4e-17	nusG; transcription termination/antitermination protein NusG	N/A
PHROG	UHGV-2080295_22	phrog_6386	93.5	1.8e-27	transcription antiterminator	transcription regulation
UniRef90	UHGV-2080295_22	UniRef90_A0A6N8H0F4	319.0	0	NGN domain-containing protein	N/A
eggNOG-mapper	UHGV-2080295_22	411471.SUBVAR_07000	206.0	0	Transcription termination factor nusG	N/A
Pfam	UHGV-2080295_22	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-2080295_22	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-2080295_22	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
KOfam	UHGV-2080295_24	K06909	376.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2080295_24	phrog_3717	150.3	9.80909e-45	terminase large subunit	head and packaging
UniRef90	UHGV-2080295_24	UniRef90_A0A6N8H4Y1	805.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2080295_24	411471.SUBVAR_06998	713.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2080295_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-2080295_24	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2080295_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2080295_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2080295_24	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_26	phrog_533	172.3	0	portal protein	head and packaging
UniRef90	UHGV-2080295_26	UniRef90_D1PRG7	597.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-2080295_26	411471.SUBVAR_06996	597.0	0	N/A	N/A
structural_annotation	UHGV-2080295_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_27	phrog_581	186.8	0	minor head protein	head and packaging
UniRef90	UHGV-2080295_27	UniRef90_UPI00196795ED	352.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-2080295_27	411471.SUBVAR_06995	545.0	0	N/A	N/A
Pfam	UHGV-2080295_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2080295_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2080295_27	PF06152,PF18825	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_30	phrog_194	80.8	2.1e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-2080295_30	UniRef90_A0A4R1QTK7	197.0	0	Minor structural protein GP20	N/A
eggNOG-mapper	UHGV-2080295_30	411471.SUBVAR_06994	219.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-2080295_30	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2080295_30	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_31	phrog_422	213.8	0	major head protein	head and packaging
eggNOG-mapper	UHGV-2080295_31	693746.OBV_18090	334.0	0	N/A	N/A
structural_annotation	UHGV-2080295_31	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2080295_34	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_35	phrog_556	48.7	0.00000000000014	minor head protein	head and packaging
UniRef90	UHGV-2080295_35	UniRef90_UPI001967B4B3	159.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-2080295_35	999411.HMPREF1092_03318	50.4	0.00000295	Minor capsid protein	N/A
Pfam	UHGV-2080295_35	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2080295_35	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_36	phrog_3266	42.3	0.00000000001	tail completion	connector
eggNOG-mapper	UHGV-2080295_36	693746.OBV_18140	181.0	0	N/A	N/A
structural_annotation	UHGV-2080295_36	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_37	phrog_3099	152.8	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-2080295_37	411471.SUBVAR_06936	257.0	0	N/A	N/A
structural_annotation	UHGV-2080295_37	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_38	phrog_11299	92.3	4.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-2080295_38	665956.HMPREF1032_03059	119.0	2.6e-32	N/A	N/A
structural_annotation	UHGV-2080295_38	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_39	phrog_706	104.8	7.8e-31	N/A	unknown function
UniRef90	UHGV-2080295_39	UniRef90_UPI0013141117	232.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2080295_39	665956.HMPREF1032_03058	213.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2080295_39	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2080295_39	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_40	phrog_1535	227.7	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2080295_40	665956.HMPREF1032_03628	191.0	0	domain protein	N/A
COG	UHGV-2080295_40	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_41	phrog_1194	68.1	1.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-2080295_41	1120746.CCNL01000014_gene2106	161.0	0	N/A	N/A
structural_annotation	UHGV-2080295_41	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_42	phrog_13879	279.9	0	N/A	unknown function
eggNOG-mapper	UHGV-2080295_42	1120746.CCNL01000014_gene2107	332.0	0	N/A	N/A
structural_annotation	UHGV-2080295_42	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_43	phrog_18725	44.2	0.0000000000029	N/A	unknown function
eggNOG-mapper	UHGV-2080295_43	1120746.CCNL01000014_gene2212	99.4	5.26e-25	N/A	N/A
eggNOG-mapper	UHGV-2080295_45	411462.DORLON_00771	79.0	0.000000000000284	N/A	N/A
structural_annotation	UHGV-2080295_45	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_46	phrog_17147	325.4	0	N/A	unknown function
eggNOG-mapper	UHGV-2080295_46	657322.FPR_27150	653.0	0	N/A	N/A
KOfam	UHGV-2080295_47	K00986	62.2	7e-18	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-2080295_47	phrog_1423	109.7	2.9e-32	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2080295_47	UniRef90_A0A348T010	706.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-2080295_47	657322.FPR_27160	382.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
COG	UHGV-2080295_47	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-2080295_47	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
KOfam	UHGV-2080295_49	K21472	64.8	1.7e-18	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	N/A
PHROG	UHGV-2080295_49	phrog_14988	42.0	0.0000000000084	peptidase	other
UniRef90	UHGV-2080295_49	UniRef90_A0A2V2FF85	255.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-2080295_49	411471.SUBVAR_05145	234.0	0	heme binding	N/A
Pfam	UHGV-2080295_49	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-2080295_49	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-2080295_49	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-2080295_50	phrog_13256	63.8	1.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-2080295_50	1226322.HMPREF1545_00132	48.5	0.00000109	N/A	N/A
KOfam	UHGV-2080295_51	K06223	233.1	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-2080295_51	phrog_56	196.2	0	DNA methyltransferase	other
UniRef90	UHGV-2080295_51	UniRef90_UPI001C3B62EA	372.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-2080295_51	411471.SUBVAR_06973	345.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-2080295_51	MTase_II_00039	137.8	1.50001e-40	Type II methyltransferase	RM
Pfam	UHGV-2080295_51	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-2080295_51	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-2080295_51	PF02086,TIGR00571,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-2080295_52	K06400	309.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2080295_52	phrog_95	333.2	0	integrase	integration and excision
UniRef90	UHGV-2080295_52	UniRef90_A0A6N8H8W9	1280.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-2080295_52	411467.BACCAP_02695	426.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-2080295_52	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2080295_52	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-2080295_52	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
UniRef90	UHGV-2080295_53	UniRef90_UPI001C0179CF	1050.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-2080295_53	622312.ROSEINA2194_02519	872.0	0	N/A	N/A
Pfam	UHGV-2080295_53	PF09820	N/A	N/A	Predicted AAA-ATPase	AAA-ATPase_like
Pfam	UHGV-2080295_53	PF08011	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_9
COG	UHGV-2080295_53	COG1672	N/A	N/A	Predicted ATPase, archaeal AAA+ ATPase superfamily	N/A
structural_annotation	UHGV-2080295_53	PF09820,PF08011,MF_01247,MF_00048,NF011275,NF001623,COG2909,COG0792	N/A	N/A	N/A	N/A
KOfam	UHGV-2080295_54	K06400	307.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2080295_54	phrog_95	312.6	0	integrase	integration and excision
UniRef90	UHGV-2080295_54	UniRef90_A0A6N8HB71	861.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-2080295_54	411471.SUBVAR_05763	349.0	0	Resolvase, N-terminal domain protein	N/A
Pfam	UHGV-2080295_54	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2080295_54	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-2080295_54	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2080295	Yes	42,325	54	89	1
UHGV-2171577	No	41,315	54	87	1
UHGV-2087519	No	41,272	54	87	1