vOTU vOTU-163355

vOTU: vOTU-163355

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-163355
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00755 → vGENUS-00618 → vOTU-163355
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Coprococcus_A → Coprococcus_A sp900548825
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0023256
Biosample ID	SAMEA4766020
Genome length (bp)	35,808 bps
CheckV completeness	86.17% (Medium-quality)
CDS count	57
CDS density	91.93%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Coprococcus_A → Coprococcus_A sp900548825	Total connections	33	Host agreement	72.73
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 86.17)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0023256_2	UniRef90_C7GC26	76.6	0.00000000000000674	N/A	N/A
eggNOG-mapper	UHGV-0023256_2	1256908.HMPREF0373_00667	63.5	0.0000000000362	N/A	N/A
KOfam	UHGV-0023256_3	K24213	42.8	0.0000000000049	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0023256_3	phrog_4433	130.4	1.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-0023256_3	886882.PPSC2_p0048	111.0	1.51e-25	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0023256_3	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0023256_3	NF007410	N/A	N/A	N/A	N/A
KOfam	UHGV-0023256_4	K07455	276.5	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0023256_4	phrog_148	269.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023256_4	UniRef90_A0A1C5Z0A8	398.0	0	p33	N/A
eggNOG-mapper	UHGV-0023256_4	658088.HMPREF0987_00529	339.0	0	RecT family	N/A
Pfam	UHGV-0023256_4	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0023256_4	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0023256_4	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0023256_4	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_5	phrog_434	356.7	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023256_5	UniRef90_A0A415L5E5	374.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0023256_5	411902.CLOBOL_00693	342.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0023256_5	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0023256_5	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0023256_5	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0023256_5	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0023256_10	K07741	110.3	4.1e-32	antB; anti-repressor protein	N/A
PHROG	UHGV-0023256_10	phrog_130	253.9	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0023256_10	UniRef90_A0A844E191	335.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0023256_10	1582156.A0A0A8WIG2_9CAUD	285.0	0	DNA binding	N/A
Pfam	UHGV-0023256_10	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0023256_10	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0023256_10	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0023256_12	UniRef90_A0A4R2LFA5	75.5	9.5e-17	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0023256_12	500632.CLONEX_03572	69.3	0.0000000000000055	N/A	N/A
structural_annotation	UHGV-0023256_12	PF01381,NF000090,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0023256_18	K22300	62.6	8.7e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0023256_18	UniRef90_A0A5B3G6T4	99.8	1.85e-24	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0023256_18	97138.C820_01960	89.0	5.11e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0023256_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0023256_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0023256_18	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_19	phrog_32721	141.6	7.00649e-45	N/A	unknown function
eggNOG-mapper	UHGV-0023256_19	1476973.JMMB01000007_gene2215	135.0	2.16e-36	N/A	N/A
UniRef90	UHGV-0023256_20	UniRef90_A0A810PZN0	157.0	1.4013e-45	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0023256_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0023256_20	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0023256_21	K06400	210.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0023256_21	phrog_95	236.7	0	integrase	integration and excision
UniRef90	UHGV-0023256_21	UniRef90_A0A1C6CR25	373.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0023256_21	1256908.HMPREF0373_00206	353.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0023256_21	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0023256_21	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0023256_21	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0023256_21	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0023256_21	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_23	phrog_2329	65.9	4.3e-19	N/A	unknown function
UniRef90	UHGV-0023256_23	UniRef90_A0A3R6DLU7	74.3	2.13e-16	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
Pfam	UHGV-0023256_23	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
COG	UHGV-0023256_23	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0023256_23	PF04014,NF007312,COG2336	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0023256_25	1226322.HMPREF1545_00079	50.4	0.00000221	N/A	N/A
eggNOG-mapper	UHGV-0023256_26	476272.RUMHYD_01772	63.2	0.000000000195	N/A	N/A
structural_annotation	UHGV-0023256_26	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_27	phrog_20016	213.7	0	N/A	unknown function
UniRef90	UHGV-0023256_27	UniRef90_A0A285PT46	212.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0023256_27	397290.C810_05214	177.0	0	N/A	N/A
structural_annotation	UHGV-0023256_27	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_28	phrog_16490	141.7	4.1002e-42	N/A	unknown function
eggNOG-mapper	UHGV-0023256_28	1408437.JNJN01000043_gene803	91.7	1.99e-19	N/A	N/A
PHROG	UHGV-0023256_29	phrog_22984	59.5	6.2e-17	N/A	unknown function
PHROG	UHGV-0023256_30	phrog_21718	78.4	9.7e-23	N/A	unknown function
UniRef90	UHGV-0023256_30	UniRef90_A0A285PT36	125.0	9.67e-34	Consensus disorder prediction	N/A
eggNOG-mapper	UHGV-0023256_30	397290.C810_05210	71.2	0.000000000000235	N/A	N/A
PHROG	UHGV-0023256_31	phrog_3754	83.2	3.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-0023256_31	476272.RUMHYD_01764	152.0	0	N/A	N/A
UniRef90	UHGV-0023256_33	UniRef90_UPI001D091A6B	353.0	0	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0023256_33	1042156.CXIVA_01560	72.0	0.00000000000531	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0023256_33	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
Pfam	UHGV-0023256_33	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0023256_33	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0023256_33	PF03412,PF01471,COG3271	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_34	phrog_443	59.4	9.7e-17	holin	lysis
UniRef90	UHGV-0023256_34	UniRef90_UPI000C75746C	108.0	1.17e-29	holin	N/A
eggNOG-mapper	UHGV-0023256_34	626523.GCWU000342_01012	86.3	2.99e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0023256_34	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0023256_34	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_35	phrog_1863	56.6	1.9e-16	N/A	unknown function
UniRef90	UHGV-0023256_35	UniRef90_UPI001D0865D2	93.6	3.52e-23	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0023256_35	1226322.HMPREF1545_04027	69.3	0.0000000000000175	N/A	N/A
Pfam	UHGV-0023256_37	PF15892	N/A	N/A	BNR repeat-containing family member	BNR_4
eggNOG-mapper	UHGV-0023256_39	742733.HMPREF9469_05009	57.4	0.000000153	N/A	N/A
structural_annotation	UHGV-0023256_39	PF16990,NF033147,COG4935	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_41	phrog_9994	135.9	2.8e-40	N/A	unknown function
eggNOG-mapper	UHGV-0023256_41	1256908.HMPREF0373_00465	103.0	1.87e-22	N/A	N/A
Pfam	UHGV-0023256_41	PF09458	N/A	N/A	H-type lectin domain	H_lectin
structural_annotation	UHGV-0023256_41	PF20747,PF09458,NF012201	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_42	phrog_538	145.1	5.395e-43	minor tail protein	tail
UniRef90	UHGV-0023256_42	UniRef90_UPI001E2C8064	204.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0023256_42	665950.HMPREF1025_02520	189.0	0	N/A	N/A
Pfam	UHGV-0023256_42	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0023256_42	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_43	phrog_33	68.7	1.2e-19	distal tail protein Dit	tail
UniRef90	UHGV-0023256_43	UniRef90_UPI0015709E93	145.0	6.09e-38	phage tail protein	N/A
eggNOG-mapper	UHGV-0023256_43	742723.HMPREF9477_00896	157.0	2.9147e-43	N/A	N/A
structural_annotation	UHGV-0023256_43	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_44	phrog_58	132.0	3.09995e-41	tail length tape measure protein	tail
UniRef90	UHGV-0023256_44	UniRef90_A0A1C6EH41	168.0	5.99994e-41	Phage-related protein	N/A
eggNOG-mapper	UHGV-0023256_44	742765.HMPREF9457_02136	174.0	2.81661e-43	nuclear chromosome segregation	N/A
COG	UHGV-0023256_44	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_45	phrog_59	137.9	4.10006e-41	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0023256_45	UniRef90_UPI0007F55685	258.0	0	NUMOD4 motif-containing HNH endonuclease	N/A
eggNOG-mapper	UHGV-0023256_45	749413.E5DV63_9VIRU	119.0	9.72e-31	HNH endonuclease	N/A
PADLOC	UHGV-0023256_45	HEase_00016	76.7	1.9e-22	homing endonuclease	RM
Pfam	UHGV-0023256_45	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0023256_45	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0023256_45	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_46	phrog_6900	141.7	5.4006e-42	tail length tape measure protein	tail
UniRef90	UHGV-0023256_46	UniRef90_A0A0R1K502	68.2	0.0000000000578	Phage tape measure protein	N/A
eggNOG-mapper	UHGV-0023256_46	1123312.KB904569_gene357	141.0	3.4e-36	Phage tail tape measure protein TP901	N/A
COG	UHGV-0023256_46	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0023256_48	phrog_885	71.7	9.1e-21	major tail protein	tail
UniRef90	UHGV-0023256_48	UniRef90_A0A843J9F0	216.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0023256_48	1504822.CCNO01000012_gene492	240.0	0	N/A	N/A
structural_annotation	UHGV-0023256_48	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_49	phrog_17405	41.4	0.000000000023	head protein	head and packaging
structural_annotation	UHGV-0023256_49	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_50	phrog_17977	66.9	2.5e-19	N/A	unknown function
UniRef90	UHGV-0023256_50	UniRef90_UPI00141211AB	127.0	9.61e-36	head-tail adaptor protein	N/A
structural_annotation	UHGV-0023256_50	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_52	phrog_544	193.1	0	major head protein	head and packaging
UniRef90	UHGV-0023256_52	UniRef90_A0A810PZM2	386.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0023256_52	1347392.CCEZ01000005_gene1236	287.0	0	N/A	N/A
structural_annotation	UHGV-0023256_52	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_53	phrog_194	41.4	0.000000000025	head scaffolding protein	head and packaging
structural_annotation	UHGV-0023256_53	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_54	phrog_5	55.2	0.000000000000002	tail completion or Neck1 protein	connector
UniRef90	UHGV-0023256_54	UniRef90_A0A7X5E1T2	111.0	8.84e-29	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0023256_54	1158602.I590_02569	75.9	0.00000000000000109	N/A	N/A
structural_annotation	UHGV-0023256_54	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_55	phrog_595	97.2	2.4e-28	head maturation protease	head and packaging
UniRef90	UHGV-0023256_55	UniRef90_A0A285PUG1	237.0	0	Phage head morphogenesis domain	N/A
eggNOG-mapper	UHGV-0023256_55	1280685.AUKC01000004_gene1632	125.0	3.03e-30	Phage Mu protein F like protein	N/A
Pfam	UHGV-0023256_55	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0023256_55	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0023256_55	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0023256_56	phrog_64	168.5	0	portal protein	head and packaging
UniRef90	UHGV-0023256_56	UniRef90_A0A856HZB4	513.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0023256_56	673376.F2VHW1_9CAUD	217.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0023256_56	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0023256_56	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0023256_57	K06909	113.4	2.6e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0023256_57	phrog_10250	182.6	0	N/A	unknown function
UniRef90	UHGV-0023256_57	UniRef90_A0A3R6SJF4	441.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0023256_57	411490.ANACAC_00783	419.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0023256_57	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0023256_57	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0023256_57	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0023256_57	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0023256_57	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0023256	Yes	35,808	44	86	1