vOTU vOTU-163481

vOTU: vOTU-163481

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-163481
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00027 → vSUBFAM-00190 → vGENUS-01600 → vOTU-163481
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1400124
Biosample ID	SAMEA4545284
Genome length (bp)	29,331 bps
CheckV completeness	58.35% (Medium-quality)
CDS count	45
CDS density	93.13%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena	Total connections	362	Host agreement	86.74
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 58.35)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1400124_1	phrog_26445	42.9	0.000000000074	N/A	unknown function
eggNOG-mapper	UHGV-1400124_1	97139.C824_00034	50.1	0.000000677	N/A	N/A
PHROG	UHGV-1400124_2	phrog_2245	72.8	4.1e-20	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-1400124_2	665950.HMPREF1025_01374	60.8	0.000000000141	N/A	N/A
KOfam	UHGV-1400124_4	K06909	320.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1400124_4	phrog_3717	137.7	1.49939e-42	terminase large subunit	head and packaging
eggNOG-mapper	UHGV-1400124_4	1443122.Z958_p0035	480.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1400124_4	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1400124_4	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1400124_4	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1400124_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1400124_4	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1400124_7	phrog_1009	43.5	0.000000000035	N/A	unknown function
PHROG	UHGV-1400124_8	phrog_443	67.6	1.9e-18	holin	lysis
eggNOG-mapper	UHGV-1400124_8	626523.GCWU000342_01012	92.0	1.98e-23	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1400124_8	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1400124_8	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1400124_9	phrog_21357	139.7	9.49996e-41	endolysin	lysis
eggNOG-mapper	UHGV-1400124_9	1007096.BAGW01000017_gene816	142.0	3.39e-38	CHAP domain	N/A
Pfam	UHGV-1400124_9	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1400124_9	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1400124_9	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1400124_9	PF01471,PF00877,TIGR02594,TIGR03979,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1400124_10	phrog_64	99.6	1.8e-28	portal protein	head and packaging
eggNOG-mapper	UHGV-1400124_10	1567015.A0A0A7RUQ6_9VIRU	124.0	6.23e-28	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1400124_10	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1400124_10	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1400124_12	phrog_1657	194.1	0	head morphogenesis	head and packaging
eggNOG-mapper	UHGV-1400124_12	748727.CLJU_c31360	137.0	3.39e-34	Portal protein	N/A
COG	UHGV-1400124_12	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1400124_15	MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-1400124_16	phrog_909	71.8	6.8e-20	major head protein	head and packaging
eggNOG-mapper	UHGV-1400124_16	1158612.I580_01911	91.3	6.91e-22	N/A	N/A
structural_annotation	UHGV-1400124_16	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-1400124_17	phrog_29	235.9	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1400124_17	1158612.I580_01912	317.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1400124_17	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1400124_17	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400124_18	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-1400124_19	phrog_4020	71.4	7.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-1400124_19	445335.CBN_3083	69.7	0.000000000000014	N/A	N/A
PHROG	UHGV-1400124_20	phrog_8435	40.1	0.0000000004	N/A	unknown function
structural_annotation	UHGV-1400124_20	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400124_21	1443122.Z958_05860	86.7	1.91e-20	N/A	N/A
structural_annotation	UHGV-1400124_21	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1400124_22	phrog_7585	81.0	1.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-1400124_22	1443122.Z958_05865	71.6	0.0000000000000356	N/A	N/A
structural_annotation	UHGV-1400124_22	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1400124_23	phrog_6686	121.5	4.8e-35	tail tube protein	tail
eggNOG-mapper	UHGV-1400124_23	748727.CLJU_c31250	87.0	1.35e-17	N/A	N/A
structural_annotation	UHGV-1400124_23	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1400124_24	phrog_6280	135.2	2.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-1400124_24	1443125.Z962_12410	107.0	5.15e-28	N/A	N/A
PHROG	UHGV-1400124_25	phrog_1533	521.6	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1400124_25	1410670.JHXF01000015_gene2302	464.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1400124_25	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1400124_25	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1400124_25	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1400124_25	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-1400124_26	phrog_36410	49.9	0.00000000000044	N/A	unknown function
eggNOG-mapper	UHGV-1400124_26	706433.HMPREF9430_01256	63.2	0.0000000162	Phage tail protein	N/A
structural_annotation	UHGV-1400124_26	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1400124_27	phrog_538	122.5	2.1e-35	minor tail protein	tail
eggNOG-mapper	UHGV-1400124_27	1134413.ANNK01000119_gene2432	105.0	1.81e-21	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-1400124_27	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
PHROG	UHGV-1400124_28	phrog_1220	168.2	0	head protein	head and packaging
eggNOG-mapper	UHGV-1400124_28	768704.Desmer_4452	110.0	2.76e-25	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-1400124_28	PF20747	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1400124_29	1688.BCUN_1858	96.7	1.37e-19	Listeria-Bacteroides repeat domain (List_Bact_rpt)	N/A
Pfam	UHGV-1400124_29	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
structural_annotation	UHGV-1400124_29	PF09479,PF00703,NF033188	N/A	N/A	N/A	N/A
PHROG	UHGV-1400124_32	phrog_15863	146.3	8.39378e-43	N/A	unknown function
eggNOG-mapper	UHGV-1400124_32	397288.C806_01234	144.0	1.34006e-41	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1400124_32	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
PHROG	UHGV-1400124_36	phrog_3754	89.3	3.6e-25	N/A	unknown function
eggNOG-mapper	UHGV-1400124_36	397290.C810_05204	77.4	1.52e-16	N/A	N/A
structural_annotation	UHGV-1400124_39	PF06003,MF_01077,NF037951,COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-1400124_41	K02316	114.5	5.5e-33	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1400124_41	phrog_47	140.7	1.10001e-40	DNA primase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400124_41	931626.Awo_c24320	76.6	0.00000000000174	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
PADLOC	UHGV-1400124_41	drt-UG29	40.7	1.5e-23	DRT	DRT
Pfam	UHGV-1400124_41	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-1400124_41	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-1400124_41	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1400124_41	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1400124_43	PF08804	N/A	N/A	N/A	N/A
KOfam	UHGV-1400124_45	K02337	554.2	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-1400124_45	phrog_405	524.9	0	DNA polymerase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1400124_45	1123325.JHUV01000015_gene245	337.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-1400124_45	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-1400124_45	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-1400124_45	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
NCBIFam	UHGV-1400124_45	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-1400124_45	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-1400124_45	PF07733,PF02811,MF_01902,NF005298,COG0587	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1400124	Yes	29,331	34	58	1