vOTU vOTU-163657

vOTU: vOTU-163657

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-163657
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-01489 → vOTU-163657
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Megasphaeraceae → Megasphaera → Megasphaera stantonii
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0118319
Biosample ID	SAMEA4431972
Genome length (bp)	26,287 bps
CheckV completeness	61.84% (Medium-quality)
CDS count	34
CDS density	93.14%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Megasphaeraceae → Megasphaera → Megasphaera stantonii	Total connections	8	Host agreement	87.5
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Megasphaeraceae → Megasphaera → Megasphaera stantonii	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 61.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0118319_2	phrog_29	187.3	0	major head protein	head and packaging
UniRef90	UHGV-0118319_2	UniRef90_UPI001D6AA5E6	367.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0118319_2	1232443.BAIA02000078_gene29	319.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0118319_2	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0118319_2	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0118319_3	phrog_2841	357.3	0	minor head protein	head and packaging
UniRef90	UHGV-0118319_3	UniRef90_UPI00195C1C3E	731.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0118319_3	1273103.NM10_01064	481.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0118319_3	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0118319_3	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0118319_3	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118319_3	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0118319_6	1401067.HMPREF0872_00280	92.4	2.94e-22	N/A	N/A
PHROG	UHGV-0118319_7	phrog_615	82.5	4.2e-24	head-tail adaptor	connector
UniRef90	UHGV-0118319_7	UniRef90_UPI001AE9DA04	67.8	0.00000000000268	ABC transporter ATP-binding protein	N/A
eggNOG-mapper	UHGV-0118319_7	1273103.NM10_01054	162.0	0	N/A	N/A
structural_annotation	UHGV-0118319_7	PF12206,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0118319_8	phrog_5	67.2	3.5e-19	tail completion or Neck1 protein	connector
UniRef90	UHGV-0118319_8	UniRef90_UPI0005EBC23C	145.0	1.11964e-42	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0118319_8	1273103.NM10_01049	181.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0118319_8	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0118319_8	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0118319_9	phrog_525	105.2	5.7e-31	N/A	unknown function
UniRef90	UHGV-0118319_9	UniRef90_UPI0011A26FBC	58.5	0.0000000423	N/A	N/A
eggNOG-mapper	UHGV-0118319_9	1273103.NM10_01044	153.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0118319_9	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-0118319_9	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0118319_10	phrog_1480	454.5	0	tail sheath	tail
UniRef90	UHGV-0118319_10	UniRef90_A0A2A2IM06	710.0	0	Phage tail sheath protein	N/A
eggNOG-mapper	UHGV-0118319_10	1123250.KB908414_gene2110	506.0	0	Phage tail sheath C-terminal domain	N/A
Pfam	UHGV-0118319_10	PF04984	N/A	N/A	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
Pfam	UHGV-0118319_10	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-0118319_10	PF10758,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-0118319_11	phrog_365	141.6	3.30006e-42	tail protein	tail
UniRef90	UHGV-0118319_11	UniRef90_A0A2A2ILG5	307.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0118319_11	1111454.HMPREF1250_0192	279.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0118319_11	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-0118319_11	PF09393,TIGR02241,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0118319_12	phrog_4976	116.0	2.3e-34	tail assembly chaperone	tail
UniRef90	UHGV-0118319_12	UniRef90_U7UIV5	148.0	5.60519e-44	Phage XkdN-like domain protein	N/A
eggNOG-mapper	UHGV-0118319_12	1111454.HMPREF1250_0193	148.0	9.80909e-45	Phage XkdN-like tail assembly chaperone protein, TAC	N/A
Pfam	UHGV-0118319_12	PF08890	N/A	N/A	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
structural_annotation	UHGV-0118319_12	PF08890	N/A	N/A	N/A	N/A
PHROG	UHGV-0118319_13	phrog_1533	314.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0118319_13	UniRef90_A0A2A2ILA2	1337.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0118319_13	1273103.NM10_01024	725.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0118319_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0118319_13	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0118319_13	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0118319_14	phrog_380	167.6	0	endolysin	lysis
UniRef90	UHGV-0118319_14	UniRef90_UPI001C1232C3	112.0	4.7e-27	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0118319_14	1123250.KB908414_gene2114	248.0	0	LysM domain	N/A
COG	UHGV-0118319_14	COG1652	N/A	N/A	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	N/A
structural_annotation	UHGV-0118319_14	PF19266,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0118319_15	phrog_400	303.8	0	tail protein	tail
UniRef90	UHGV-0118319_15	UniRef90_A0A848EUW7	337.0	0	Phage_lysozyme2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0118319_15	1273103.NM10_01014	437.0	0	NLP P60 protein	N/A
COG	UHGV-0118319_15	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0118319_15	PF14594,PF00877,NF033848,NF008096,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0118319_16	phrog_579	89.4	2.9e-26	N/A	unknown function
UniRef90	UHGV-0118319_16	UniRef90_UPI001DAA9C69	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-0118319_16	1123250.KB908414_gene2116	155.0	0	N/A	N/A
Pfam	UHGV-0118319_16	PF10844	N/A	N/A	N/A	DUF2577
structural_annotation	UHGV-0118319_16	PF10844,TIGR00523	N/A	N/A	N/A	N/A
PHROG	UHGV-0118319_17	phrog_120	91.2	9.2e-27	baseplate protein	tail
UniRef90	UHGV-0118319_17	UniRef90_UPI00195F4444	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-0118319_17	1273103.NM10_01004	192.0	0	N/A	N/A
Pfam	UHGV-0118319_17	PF10934	N/A	N/A	N/A	DUF2634
structural_annotation	UHGV-0118319_17	PF10934,MF_02010,TIGR03357,COG3628	N/A	N/A	N/A	N/A
PHROG	UHGV-0118319_18	phrog_6	203.3	0	baseplate protein	tail
UniRef90	UHGV-0118319_18	UniRef90_A0A2A2IJK7	633.0	0	Baseplate_J domain-containing protein	N/A
eggNOG-mapper	UHGV-0118319_18	1273103.NM10_00999	420.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0118319_18	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0118319_18	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118319_18	PF04865,PF21379,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0118319_19	phrog_521	92.1	5.2e-27	tail protein	tail
UniRef90	UHGV-0118319_19	UniRef90_UPI0019573921	347.0	0	N/A	N/A
eggNOG-mapper	UHGV-0118319_19	568816.Acin_1302	139.0	3.73e-38	N/A	N/A
Pfam	UHGV-0118319_19	PF10076	N/A	N/A	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
COG	UHGV-0118319_19	COG3778	N/A	N/A	N/A	N/A
PHROG	UHGV-0118319_20	phrog_7037	86.3	4.7e-25	tail fiber protein	tail
UniRef90	UHGV-0118319_20	UniRef90_UPI000F8F5B7B	152.0	2.97e-38	pyocin knob domain-containing protein	N/A
eggNOG-mapper	UHGV-0118319_20	883156.HMPREF9282_01256	100.0	3.16e-21	Phage tail-collar fibre protein	N/A
Pfam	UHGV-0118319_20	PF12571	N/A	N/A	Phage tail-collar fibre protein	DUF3751
COG	UHGV-0118319_20	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
KOfam	UHGV-0118319_21	K14059	139.4	5.10003e-41	int; integrase	N/A
PHROG	UHGV-0118319_21	phrog_1	164.4	0	integrase	integration and excision
UniRef90	UHGV-0118319_21	UniRef90_A0A1C5UD11	630.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0118319_21	1273103.NM10_01678	486.0	0	Phage integrase family	N/A
Pfam	UHGV-0118319_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0118319_21	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0118319_21	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0118319_22	1009370.ALO_01674	50.4	0.00000587	N/A	N/A
PHROG	UHGV-0118319_24	phrog_199	96.0	3.7e-28	holin	lysis
UniRef90	UHGV-0118319_24	UniRef90_UPI001EF57100	273.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0118319_24	1064535.MELS_1118	197.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0118319_24	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0118319_24	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0118319_24	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0118319_24	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0118319_25	K01448	172.5	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0118319_25	phrog_435	165.1	0	endolysin	lysis
UniRef90	UHGV-0118319_25	UniRef90_A0A2A2IKC5	317.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0118319_25	568816.Acin_1320	222.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0118319_25	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0118319_25	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0118319_25	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-0118319_28	K07483	44.2	6.1e-20	K07483; transposase	N/A
PHROG	UHGV-0118319_28	phrog_151	74.5	1.2e-21	transposase	integration and excision
UniRef90	UHGV-0118319_28	UniRef90_A0A1C5W269	342.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0118319_28	1273103.NM10_05506	253.0	0	Transposase IS3 IS911 family protein	N/A
Pfam	UHGV-0118319_28	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
Pfam	UHGV-0118319_28	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
COG	UHGV-0118319_28	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0118319_28	PF13518,PF13384,NF038385,COG2963	N/A	N/A	N/A	N/A
KOfam	UHGV-0118319_29	K07497	123.5	3e-36	K07497; putative transposase	N/A
PHROG	UHGV-0118319_29	phrog_157	228.7	0	transposase	integration and excision
UniRef90	UHGV-0118319_29	UniRef90_A0A346AWC2	526.0	0	IS3 family transposase	N/A
eggNOG-mapper	UHGV-0118319_29	1273103.NM10_07539	459.0	0	Integrase core domain	N/A
Pfam	UHGV-0118319_29	PF13276	N/A	N/A	HTH-like domain	HTH_21
Pfam	UHGV-0118319_29	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-0118319_29	PF13333	N/A	N/A	Integrase core domain	rve_2
NCBIFam	UHGV-0118319_29	NF033516.0	N/A	N/A	IS3 family transposase	N/A
COG	UHGV-0118319_29	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0118319_29	PF00665,PF13276,NF033516,COG2801	N/A	N/A	N/A	N/A
PHROG	UHGV-0118319_30	phrog_13260	259.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0118319_30	177439.DP2013	400.0	0	N/A	N/A
structural_annotation	UHGV-0118319_30	PF20703,MF_01407,NF001624,COG1474	N/A	N/A	N/A	N/A
UniRef90	UHGV-0118319_31	UniRef90_F9MPH0	99.4	1.44e-22	Putative lipoprotein	N/A
KOfam	UHGV-0118319_32	K05592	508.0	0	deaD, cshA; ATP-dependent RNA helicase DeaD [EC:3.6.4.13]	N/A
PHROG	UHGV-0118319_32	phrog_16	115.0	2.4e-34	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118319_32	UniRef90_S7HRJ5	810.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0118319_32	1273103.NM10_04473	810.0	0	DEAD DEAH box helicase	N/A
PADLOC	UHGV-0118319_32	BrxHI_00004	84.2	1.6e-24	BrxHI	BREX
Pfam	UHGV-0118319_32	PF00270	N/A	N/A	DEAD/DEAH box helicase	DEAD
Pfam	UHGV-0118319_32	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0118319_32	COG0513	N/A	N/A	Superfamily II DNA and RNA helicase	N/A
eggNOG-mapper	UHGV-0118319_33	1273103.NM10_04478	285.0	0	N/A	N/A
eggNOG-mapper	UHGV-0118319_34	1273103.NM10_04483	315.0	0	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0118319	Yes	26,287	50	62	1