vOTU vOTU-163769

vOTU: vOTU-163769

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-163769
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00011 → vSUBFAM-01975 → vGENUS-24339 → vOTU-163769
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lactiplantibacillus → Lactiplantibacillus plantarum
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0139698
Biosample ID	N/A
Genome length (bp)	31,111 bps
CheckV completeness	73.31% (Medium-quality)
CDS count	36
CDS density	88.94%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Pediococcus	Total connections	6	Host agreement	83.33
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lactiplantibacillus → Lactiplantibacillus plantarum	Total connections	219	Host agreement	98.17

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 73.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0139698_1	phrog_98	72.3	6.8e-21	N/A	unknown function
UniRef90	UHGV-0139698_1	UniRef90_UPI0010FBC6EE	166.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0139698_1	220668.lp_0653	152.0	0	YopX protein	N/A
Pfam	UHGV-0139698_1	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0139698_1	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_2	phrog_419	81.4	1.4e-23	N/A	unknown function
UniRef90	UHGV-0139698_2	UniRef90_UPI000FCA5D62	259.0	0	N/A	N/A
eggNOG-mapper	UHGV-0139698_2	947981.E9LUP3_9CAUD	142.0	1.38995e-41	N/A	N/A
Pfam	UHGV-0139698_2	PF07852	N/A	N/A	N/A	DUF1642
structural_annotation	UHGV-0139698_2	PF07852	N/A	N/A	N/A	N/A
UniRef90	UHGV-0139698_3	UniRef90_A0A165NQY1	93.2	5.42e-24	Prophage Lp1 protein 32	N/A
eggNOG-mapper	UHGV-0139698_3	220668.lp_0655	94.7	2.23e-25	N/A	N/A
PHROG	UHGV-0139698_4	phrog_248	118.9	3.3e-35	transcriptional activator	transcription regulation
UniRef90	UHGV-0139698_4	UniRef90_A0A199QHS4	301.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0139698_4	220668.lp_0656	302.0	0	Phage transcriptional regulator, ArpU family	N/A
NCBIFam	UHGV-0139698_4	TIGR01637.1	N/A	N/A	ArpU family phage packaging/lysis transcriptional regulator	N/A
structural_annotation	UHGV-0139698_4	PF07374,TIGR01637	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_6	phrog_8224	117.9	3.4e-35	N/A	unknown function
UniRef90	UHGV-0139698_6	UniRef90_A0A2A3TWX4	133.0	5.38e-39	N/A	N/A
Pfam	UHGV-0139698_6	PF13031	N/A	N/A	N/A	DUF3892
structural_annotation	UHGV-0139698_6	PF13031	N/A	N/A	N/A	N/A
UniRef90	UHGV-0139698_7	UniRef90_A0A806IW84	77.8	1.3e-17	Prophage P2a protein 32	N/A
eggNOG-mapper	UHGV-0139698_7	220668.lp_2425	69.3	0.00000000000000493	N/A	N/A
PHROG	UHGV-0139698_8	phrog_4133	92.2	3.1e-27	N/A	unknown function
Pfam	UHGV-0139698_8	PF05532	N/A	N/A	CsbD-like	CsbD
structural_annotation	UHGV-0139698_8	PF05532,COG3237	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_9	phrog_872	84.9	1e-24	N/A	unknown function
UniRef90	UHGV-0139698_9	UniRef90_UPI0004132017	140.0	7.82065e-42	N/A	N/A
eggNOG-mapper	UHGV-0139698_9	278197.PEPE_0778	117.0	8.96e-34	N/A	N/A
Pfam	UHGV-0139698_9	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0139698_9	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0139698_9	PF11195	N/A	N/A	N/A	N/A
KOfam	UHGV-0139698_10	K07474	113.7	3e-33	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0139698_10	phrog_2606	233.2	0	terminase small subunit	head and packaging
UniRef90	UHGV-0139698_10	UniRef90_A0A0R2GAU6	524.0	0	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0139698_10	1423775.BAMN01000027_gene61	321.0	0	Terminase small subunit	N/A
Pfam	UHGV-0139698_10	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0139698_10	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0139698_10	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0139698_11	K06909	146.0	3.19496e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0139698_11	phrog_5653	161.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0139698_11	UniRef90_A0A836ZDS7	828.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0139698_11	60520.HR47_13505	742.0	0	Terminase-like family	N/A
Pfam	UHGV-0139698_11	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0139698_11	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0139698_11	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0139698_11	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0139698_11	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_12	phrog_64	396.8	0	portal protein	head and packaging
UniRef90	UHGV-0139698_12	UniRef90_D7VCH6	939.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-0139698_12	60520.HR47_13500	946.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0139698_12	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0139698_12	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0139698_12	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_13	phrog_115	328.6	0	minor head protein	head and packaging
UniRef90	UHGV-0139698_13	UniRef90_A0A1E3KTP8	1017.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0139698_13	60520.HR47_13490	1062.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0139698_13	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0139698_13	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0139698_13	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0139698_13	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_14	phrog_3711	98.6	2.9e-29	N/A	unknown function
eggNOG-mapper	UHGV-0139698_14	60520.HR47_13485	135.0	6.42005e-41	N/A	N/A
PHROG	UHGV-0139698_16	phrog_172	96.1	4.4e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-0139698_16	UniRef90_D7VCI2	349.0	0	Scaffold protein	N/A
eggNOG-mapper	UHGV-0139698_16	257314.LJ_0312	79.3	0.00000000000000278	N/A	N/A
Pfam	UHGV-0139698_16	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0139698_16	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_17	phrog_909	112.5	2e-33	major head protein	head and packaging
UniRef90	UHGV-0139698_17	UniRef90_A0A0R1VNK8	152.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0139698_17	60520.HR47_13470	198.0	0	N/A	N/A
PHROG	UHGV-0139698_18	phrog_29	229.2	0	major head protein	head and packaging
UniRef90	UHGV-0139698_18	UniRef90_A0A4V2L1P4	615.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0139698_18	60520.HR47_13465	615.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0139698_18	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0139698_18	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0139698_19	UniRef90_A0A4Q9Y035	100.0	5.86e-27	Conjugal transfer protein	N/A
PHROG	UHGV-0139698_20	phrog_132	43.7	0.000000000004	head-tail adaptor	connector
UniRef90	UHGV-0139698_20	UniRef90_UPI0009783EF6	169.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0139698_20	60520.HR47_13455	216.0	0	N/A	N/A
Pfam	UHGV-0139698_20	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0139698_20	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_21	phrog_2168	147.6	2.66247e-44	N/A	unknown function
UniRef90	UHGV-0139698_21	UniRef90_A0A0R1UW44	175.0	0	N/A	N/A
eggNOG-mapper	UHGV-0139698_21	60520.HR47_13450	242.0	0	N/A	N/A
structural_annotation	UHGV-0139698_21	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_22	phrog_5	61.5	1.8e-17	tail completion or Neck1 protein	connector
UniRef90	UHGV-0139698_22	UniRef90_A0A0R2G1J5	351.0	0	N/A	N/A
eggNOG-mapper	UHGV-0139698_22	60520.HR47_13445	371.0	0	N/A	N/A
Pfam	UHGV-0139698_22	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0139698_22	TIGR01725	N/A	N/A	N/A	N/A
UniRef90	UHGV-0139698_23	UniRef90_A0A0R2G0R1	226.0	0	N/A	N/A
eggNOG-mapper	UHGV-0139698_23	60520.HR47_13440	233.0	0	N/A	N/A
structural_annotation	UHGV-0139698_23	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_24	phrog_158	76.7	3.9e-22	major tail protein	tail
UniRef90	UHGV-0139698_24	UniRef90_D7VCJ0	293.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0139698_24	60520.HR47_13435	304.0	0	Phage tail tube protein, TTP	N/A
Pfam	UHGV-0139698_24	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0139698_24	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_25	phrog_183	67.2	2.5e-19	tail chaperone protein	tail
UniRef90	UHGV-0139698_25	UniRef90_A0A0R2GC78	245.0	0	N/A	N/A
eggNOG-mapper	UHGV-0139698_25	60520.HR47_13430	243.0	0	N/A	N/A
Pfam	UHGV-0139698_25	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-0139698_25	PF19591,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_26	phrog_2066	85.8	4.2e-25	N/A	unknown function
UniRef90	UHGV-0139698_26	UniRef90_A0A0R2GAJ5	149.0	7.00649e-45	N/A	N/A
eggNOG-mapper	UHGV-0139698_26	60520.HR47_13425	158.0	0	N/A	N/A
PHROG	UHGV-0139698_27	phrog_1535	732.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0139698_27	UniRef90_D7VCJ3	2895.0	0	Minor tail protein	N/A
eggNOG-mapper	UHGV-0139698_27	60520.HR47_13420	2891.0	0	domain protein	N/A
COG	UHGV-0139698_27	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_28	phrog_1194	140.5	4.90034e-42	N/A	unknown function
UniRef90	UHGV-0139698_28	UniRef90_A0A0R1VMM5	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-0139698_28	60520.HR47_13415	239.0	0	N/A	N/A
Pfam	UHGV-0139698_28	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0139698_28	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_29	phrog_22212	570.5	0	N/A	unknown function
UniRef90	UHGV-0139698_29	UniRef90_D7VCJ5	2804.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0139698_29	60520.HR47_13410	1728.0	0	DNA recombination	N/A
Pfam	UHGV-0139698_29	PF07902	N/A	N/A	gp58-like protein	Gp58
COG	UHGV-0139698_29	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-0139698_29	PF05113,PF04300,PF04862,NF033848,NF033675,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_30	phrog_1401	120.9	6.2e-36	N/A	unknown function
UniRef90	UHGV-0139698_30	UniRef90_A0A4V2L1N6	283.0	0	N/A	N/A
eggNOG-mapper	UHGV-0139698_30	60520.HR47_13405	285.0	0	N/A	N/A
Pfam	UHGV-0139698_30	PF07761	N/A	N/A	N/A	DUF1617
structural_annotation	UHGV-0139698_30	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_31	phrog_19261	83.1	3.1e-24	N/A	unknown function
KOfam	UHGV-0139698_32	K07273	112.7	4.1e-33	acm; lysozyme	N/A
PHROG	UHGV-0139698_32	phrog_291	141.6	6.19934e-42	endolysin	lysis
UniRef90	UHGV-0139698_32	UniRef90_A0A1E3KTM0	748.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0139698_32	60520.HR47_13395	720.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0139698_32	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0139698_32	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0139698_32	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0139698_32	PF01183,PF08460,PF01476,MF_00134_A,NF033202,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0139698_33	phrog_1009	62.4	6e-18	N/A	unknown function
UniRef90	UHGV-0139698_33	UniRef90_A0A1I9KK55	150.0	1.4013e-45	Holin	N/A
eggNOG-mapper	UHGV-0139698_33	220668.lp_0682	181.0	0	N/A	N/A
PHROG	UHGV-0139698_34	phrog_13404	199.5	0	holin	lysis
UniRef90	UHGV-0139698_34	UniRef90_A0A7I0ER13	202.0	0	Holin	N/A
eggNOG-mapper	UHGV-0139698_34	1136177.KCA1_1107	164.0	0	Bacteriophage holin	N/A
Pfam	UHGV-0139698_34	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
COG	UHGV-0139698_34	COG5546	N/A	N/A	N/A	N/A
UniRef90	UHGV-0139698_36	UniRef90_A0A8A8C4F9	106.0	2.01e-29	Cytochrome D ubiquinol oxidase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0139698	Yes	31,111	42	73	1