vOTU vOTU-165052

vOTU: vOTU-165052

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-165052
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella morbillorum
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-05203 → vGENUS-10714 → vOTU-165052
Host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas_E → Pseudomonas_E paracarnis
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1478942
Biosample ID	SAMEA2738155
Genome length (bp)	29,822 bps
CheckV completeness	89.73% (Medium-quality)
CDS count	45
CDS density	85.95%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas_E → Pseudomonas_E paracarnis	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella morbillorum	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 89.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1478942_3	K04763	113.6	2.3e-33	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1478942_3	phrog_216	185.0	0	integrase	integration and excision
UniRef90	UHGV-1478942_3	UniRef90_C8NHW7	280.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-1478942_3	638301.HMPREF0444_1512	280.0	0	Phage integrase family	N/A
Pfam	UHGV-1478942_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1478942_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1478942_3	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-1478942_7	UniRef90_UPI000403EAB4	86.7	1.55e-20	N/A	N/A
PHROG	UHGV-1478942_9	phrog_98	66.6	3.4e-19	N/A	unknown function
UniRef90	UHGV-1478942_9	UniRef90_UPI001F05F887	85.5	5.82e-19	YopX family protein	N/A
eggNOG-mapper	UHGV-1478942_9	562981.HMPREF0428_00992	79.3	2.38e-17	YopX protein	N/A
Pfam	UHGV-1478942_9	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1478942_9	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1478942_9	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1478942_12	NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_15	phrog_361	119.9	1.3e-35	terminase small subunit	head and packaging
UniRef90	UHGV-1478942_15	UniRef90_UPI000E3C513C	142.0	2.73001e-41	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1478942_15	638301.HMPREF0444_1510	149.0	7.00649e-45	Phage terminase, small subunit	N/A
Pfam	UHGV-1478942_15	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1478942_15	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1478942_15	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_16	phrog_9	307.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1478942_16	UniRef90_A0A4D6APW1	825.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1478942_16	1005705.HMPREF9967_1039	820.0	0	Phage Terminase	N/A
Pfam	UHGV-1478942_16	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1478942_16	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1478942_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1478942_16	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_17	phrog_12	166.2	0	portal protein	head and packaging
UniRef90	UHGV-1478942_17	UniRef90_A0A0P0N6J3	508.0	0	Phage portal (Connector) protein	N/A
eggNOG-mapper	UHGV-1478942_17	1123314.AUIO01000016_gene838	502.0	0	Phage portal protein	N/A
Pfam	UHGV-1478942_17	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1478942_17	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1478942_17	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1478942_17	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1478942_18	K06904	137.3	1.4e-40	N/A	N/A
PHROG	UHGV-1478942_18	phrog_80	159.8	0	head maturation protease	head and packaging
UniRef90	UHGV-1478942_18	UniRef90_A0A4U9XQT4	240.0	0	Bacteriophage maturation protease	N/A
eggNOG-mapper	UHGV-1478942_18	1123314.AUIO01000016_gene839	229.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1478942_18	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1478942_18	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1478942_18	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1478942_18	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_19	phrog_10	145.1	3.19496e-43	major head protein	head and packaging
UniRef90	UHGV-1478942_19	UniRef90_A0A4U9XP63	395.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1478942_19	1316408.HSISM1_1054	334.0	0	capsid protein	N/A
Pfam	UHGV-1478942_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1478942_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1478942_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1478942_19	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_20	phrog_3673	49.0	0.000000000000035	Arc-like repressor	transcription regulation
eggNOG-mapper	UHGV-1478942_20	1033743.CAES01000104_gene3498	47.8	0.00000858	N/A	N/A
PHROG	UHGV-1478942_21	phrog_2550	107.4	4.3e-32	N/A	unknown function
UniRef90	UHGV-1478942_21	UniRef90_UPI000B588F1B	94.0	3.26e-23	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1478942_21	1121428.DESHY_20139___1	99.4	4.05e-26	N/A	N/A
structural_annotation	UHGV-1478942_21	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_22	phrog_1951	106.5	1.2e-31	head-tail adaptor	connector
UniRef90	UHGV-1478942_22	UniRef90_A0A7C6X4Z8	74.7	0.00000000000000238	Phage head closure protein	N/A
eggNOG-mapper	UHGV-1478942_22	1316408.HSISM1_1057	68.9	0.0000000000000685	Phage head-tail joining protein	N/A
NCBIFam	UHGV-1478942_22	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1478942_22	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1478942_22	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_23	phrog_5	44.8	0.000000000003	tail completion or Neck1 protein	connector
UniRef90	UHGV-1478942_23	UniRef90_UPI000F5C5DF4	62.8	0.000000000359	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1478942_23	1226322.HMPREF1545_00119	71.2	0.0000000000000324	N/A	N/A
Pfam	UHGV-1478942_23	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1478942_23	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_24	phrog_78	45.7	0.0000000000013	tail terminator	connector
eggNOG-mapper	UHGV-1478942_24	1123311.KB904448_gene33	87.4	6.09e-21	N/A	N/A
structural_annotation	UHGV-1478942_24	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_25	phrog_88	160.4	0	major tail protein	tail
UniRef90	UHGV-1478942_25	UniRef90_A0A5C8K3Q7	202.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1478942_25	1158604.I591_01761	197.0	0	phage major tail protein, phi13 family	N/A
Pfam	UHGV-1478942_25	PF06488	N/A	N/A	Phage tail tube protein	L_lac_phage_MSP
NCBIFam	UHGV-1478942_25	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1478942_25	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_26	phrog_709	73.8	2.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-1478942_26	1121105.ATXL01000027_gene752	81.6	1.49e-18	N/A	N/A
structural_annotation	UHGV-1478942_26	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_27	phrog_5755	356.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1478942_27	UniRef90_C8NHV3	550.0	0	Phage tail tape measure protein, TP901 family	N/A
eggNOG-mapper	UHGV-1478942_27	638301.HMPREF0444_1498	550.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1478942_27	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1478942_27	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1478942_27	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1478942_27	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_28	phrog_33	58.8	1.5e-16	distal tail protein Dit	tail
UniRef90	UHGV-1478942_28	UniRef90_UPI001CC00BD7	172.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1478942_28	1123302.KB904184_gene979	183.0	0	N/A	N/A
structural_annotation	UHGV-1478942_28	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_29	phrog_2189	312.5	0	tail protein	tail
UniRef90	UHGV-1478942_29	UniRef90_C5J973	335.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1478942_29	644007.C5J973_9CAUD	335.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-1478942_29	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-1478942_29	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1478942_29	PF14594,PF00629,TIGR01665,TIGR04362,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_30	phrog_1401	107.1	1.1e-31	N/A	unknown function
UniRef90	UHGV-1478942_30	UniRef90_UPI000DA3268D	110.0	3.72e-28	N/A	N/A
eggNOG-mapper	UHGV-1478942_30	173707.Q938J8_9CAUD	104.0	8.34e-27	N/A	N/A
Pfam	UHGV-1478942_30	PF07761	N/A	N/A	N/A	DUF1617
PHROG	UHGV-1478942_31	phrog_2566	78.6	5.2e-23	N/A	unknown function
UniRef90	UHGV-1478942_31	UniRef90_A0A0Z8KYC0	90.1	6.05e-22	N/A	N/A
eggNOG-mapper	UHGV-1478942_31	59241.E7DNC0_BPDP1	66.2	0.000000000000331	N/A	N/A
PHROG	UHGV-1478942_32	phrog_199	64.6	1.2e-18	holin	lysis
UniRef90	UHGV-1478942_32	UniRef90_A0A2X4RDZ6	181.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-1478942_32	1140002.I570_02928	144.0	7.44089e-43	Bacteriophage holin family	N/A
Pfam	UHGV-1478942_32	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1478942_32	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1478942_32	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1478942_33	K01447	62.0	1e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1478942_33	phrog_1110	231.8	0	endolysin	lysis
UniRef90	UHGV-1478942_33	UniRef90_UPI0018C8D0FF	576.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1478942_33	562981.HMPREF0428_00964	695.0	0	CHAP domain	N/A
Pfam	UHGV-1478942_33	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1478942_33	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1478942_33	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1478942_33	PF01510,PF06347,PF05257,NF041850,NF033742,COG5632,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_35	phrog_1529	70.2	4.3e-20	N/A	unknown function
UniRef90	UHGV-1478942_35	UniRef90_UPI001BA68B8F	55.1	0.0000000158	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1478942_35	638301.HMPREF0444_1037	50.4	0.000000154	N/A	N/A
KOfam	UHGV-1478942_36	K14059	63.2	6e-18	int; integrase	N/A
PHROG	UHGV-1478942_36	phrog_1	75.0	1.5e-21	integrase	integration and excision
UniRef90	UHGV-1478942_36	UniRef90_U2S4U5	129.0	2.1e-37	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-1478942_36	1121914.AUDW01000022_gene39	130.0	1.92e-35	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1478942_36	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1478942_36	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-1478942_37	phrog_806	76.4	4.3e-22	N/A	unknown function
UniRef90	UHGV-1478942_37	UniRef90_UPI001248F911	132.0	6.61e-36	N/A	N/A
eggNOG-mapper	UHGV-1478942_37	1123302.KB904168_gene585	129.0	1.16e-35	N/A	N/A
structural_annotation	UHGV-1478942_37	PF16729,MF_00791,TIGR04087,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-1478942_38	K22300	54.0	0.0000000000000035	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1478942_38	phrog_8	50.5	0.000000000000042	transcriptional regulator	transcription regulation
UniRef90	UHGV-1478942_38	UniRef90_A0A2X4NG63	114.0	4.77e-30	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-1478942_38	562982.HMPREF0432_00732	111.0	7.08e-30	sequence-specific DNA binding	N/A
Pfam	UHGV-1478942_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1478942_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1478942_38	PF12844,MF_00584,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1478942_40	phrog_9607	162.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1478942_40	1321820.HMPREF1983_00955	188.0	0	N/A	N/A
structural_annotation	UHGV-1478942_40	PF05753,MF_00791,NF003967,COG3354	N/A	N/A	N/A	N/A
UniRef90	UHGV-1478942_41	UniRef90_A0A2X4RDU8	157.0	0	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-1478942_41	1104325.M7W_746	49.7	0.000000526	N/A	N/A
Pfam	UHGV-1478942_41	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-1478942_42	phrog_4298	86.3	2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1478942_42	743719.PaelaDRAFT_5542	87.4	5.17e-22	N/A	N/A
UniRef90	UHGV-1478942_44	UniRef90_A0A133ZVH8	97.4	4.1e-25	Putative toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	N/A
eggNOG-mapper	UHGV-1478942_44	1321784.HMPREF1987_01877	56.2	0.00000000225	N/A	N/A
Pfam	UHGV-1478942_44	PF19807	N/A	N/A	N/A	DUF6290

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1478942	Yes	29,822	31	90	1