vOTU vOTU-165338

vOTU: vOTU-165338

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-165338
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01629 → vGENUS-01702 → vOTU-165338
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1462825
Biosample ID	SAMEA1906528
Genome length (bp)	35,426 bps
CheckV completeness	81.15% (Medium-quality)
CDS count	47
CDS density	93.82%
tRNA count	2
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	110	Host agreement	70.91
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	17	Host agreement	76.47

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 81.15)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1462825_6	PF11112,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1462825_7	phrog_8	42.4	0.000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-1462825_7	UniRef90_A0A328UFC2	68.2	0.000000000000105	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1462825_7	411459.RUMOBE_00961	55.8	0.0000000058	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-1462825_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1462825_7	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1462825_7	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1462825_8	1121344.JHZO01000003_gene989	58.2	0.00000000341	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-1462825_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1462825_8	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1462825_8	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1462825_11	K14059	163.7	0	int; integrase	N/A
PHROG	UHGV-1462825_11	phrog_1	164.3	0	integrase	integration and excision
UniRef90	UHGV-1462825_11	UniRef90_A0A1C5W824	558.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1462825_11	693746.OBV_41260	307.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1462825_11	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1462825_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1462825_11	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1462825_11	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-1462825_12	UniRef90_A0A8F0WD75	76.3	0.0000000000000328	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1462825_12	1408437.JNJN01000043_gene801	73.2	0.0000000000000875	N/A	N/A
structural_annotation	UHGV-1462825_13	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1462825_14	phrog_16490	55.2	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-1462825_14	397290.C810_05212	62.4	0.00000000569	N/A	N/A
PHROG	UHGV-1462825_15	phrog_22984	46.7	0.00000000000055	N/A	unknown function
UniRef90	UHGV-1462825_17	UniRef90_A0A658JVX5	69.7	0.0000000000000355	Sigma-70 family RNA polymerase sigma factor	N/A
Pfam	UHGV-1462825_17	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-1462825_17	PF04545,MF_00674,NF009179,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-1462825_18	K01447	95.0	1.2e-27	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1462825_18	phrog_670	116.0	4.1e-34	endolysin	lysis
UniRef90	UHGV-1462825_18	UniRef90_A0A252F607	206.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1462825_18	411463.EUBVEN_00418	200.0	0	Ami_2	N/A
Pfam	UHGV-1462825_18	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1462825_18	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1462825_18	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1462825_18	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1462825_19	phrog_1129	58.6	8.3e-17	holin	lysis
UniRef90	UHGV-1462825_19	UniRef90_R5D220	131.0	3.76e-38	Putative holin	N/A
eggNOG-mapper	UHGV-1462825_19	1007096.BAGW01000032_gene1582	111.0	5.29e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1462825_19	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1462825_19	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1462825_20	phrog_35892	84.1	6.8e-25	N/A	unknown function
Pfam	UHGV-1462825_20	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
PHROG	UHGV-1462825_21	phrog_15594	69.3	4.8e-20	N/A	unknown function
structural_annotation	UHGV-1462825_21	PF16640,TIGR04488	N/A	N/A	N/A	N/A
UniRef90	UHGV-1462825_22	UniRef90_A0A3D5TE86	135.0	8.94e-40	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-1462825_22	1235835.C814_01206	100.0	1.03e-26	N/A	N/A
PHROG	UHGV-1462825_23	phrog_22978	517.5	0	N/A	unknown function
UniRef90	UHGV-1462825_23	UniRef90_R5G452	340.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-1462825_23	1410650.JHWL01000003_gene2814	320.0	0	N/A	N/A
PHROG	UHGV-1462825_24	phrog_2649	58.2	2.3e-16	endolysin	lysis
UniRef90	UHGV-1462825_24	UniRef90_A0A358ARU4	172.0	1.4013e-45	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1462825_24	1410650.JHWL01000003_gene2815	135.0	4.48e-32	N/A	N/A
Pfam	UHGV-1462825_24	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-1462825_24	PF01471,TIGR02869	N/A	N/A	N/A	N/A
PHROG	UHGV-1462825_25	phrog_372	231.6	0	tail protein	tail
UniRef90	UHGV-1462825_25	UniRef90_UPI001D0897E0	249.0	0	N/A	N/A
eggNOG-mapper	UHGV-1462825_25	1235802.C823_05263	241.0	0	N/A	N/A
Pfam	UHGV-1462825_25	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1462825_25	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1462825_26	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-1462825_27	phrog_511	186.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1462825_27	1410650.JHWL01000003_gene2827	309.0	0	N/A	N/A
structural_annotation	UHGV-1462825_27	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1462825_28	phrog_12105	130.1	8.7e-39	N/A	unknown function
eggNOG-mapper	UHGV-1462825_28	1226322.HMPREF1545_03850	93.2	9.31e-23	N/A	N/A
PHROG	UHGV-1462825_30	phrog_1357	203.3	0	major head protein	head and packaging
UniRef90	UHGV-1462825_30	UniRef90_A0A2V2CFL5	598.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1462825_30	1410650.JHWL01000003_gene2830	267.0	0	N/A	N/A
NCBIFam	UHGV-1462825_30	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1462825_30	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1462825_31	phrog_13908	186.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1462825_31	1410650.JHWL01000003_gene2831	98.6	1.05e-20	N/A	N/A
KOfam	UHGV-1462825_32	K07584	49.9	0.000000000000062	N/A	N/A
PHROG	UHGV-1462825_32	phrog_4478	54.2	0.0000000000000022	peptidase	other
UniRef90	UHGV-1462825_32	UniRef90_UPI00102FFAFD	59.3	0.0000000025	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1462825_32	1048834.TC41_1911	54.7	0.0000000317	Cysteine protease Prp	N/A
Pfam	UHGV-1462825_32	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1462825_32	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1462825_32	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1462825_33	phrog_156	298.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1462825_33	1410650.JHWL01000003_gene2833	538.0	0	N/A	N/A
structural_annotation	UHGV-1462825_33	PF16510,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1462825_34	K06909	138.0	8.90007e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1462825_34	phrog_979	126.8	7.3e-39	terminase large subunit	head and packaging
UniRef90	UHGV-1462825_34	UniRef90_A0A810Q5R0	622.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1462825_34	1410650.JHWL01000003_gene2834	566.0	0	N/A	N/A
Pfam	UHGV-1462825_34	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1462825_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1462825_34	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1462825_35	phrog_606	82.5	5.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1462825_35	UniRef90_UPI00195648BB	170.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1462825_35	397290.C810_05185	135.0	1.62e-38	DNA-packaging protein gp3	N/A
Pfam	UHGV-1462825_35	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1462825_35	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-1462825_37	UniRef90_A0A1Q9JGI6	139.0	1.85e-39	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1462825_37	1118055.CAGU01000028_gene99	118.0	7.01e-32	N/A	N/A
structural_annotation	UHGV-1462825_37	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
UniRef90	UHGV-1462825_40	UniRef90_A0A8D9PDK2	58.2	0.00000000585	Zinc-ribbon containing domain	N/A
PHROG	UHGV-1462825_44	phrog_38832	73.4	8.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-1462825_44	1232443.BAIA02000078_gene48	127.0	4.74e-36	N/A	N/A
structural_annotation	UHGV-1462825_44	PF11717,TIGR02450	N/A	N/A	N/A	N/A
UniRef90	UHGV-1462825_47	UniRef90_A0A3R6QK08	68.6	0.0000000000000993	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1462825_47	875454.BAEW01000002_gene491	67.4	0.0000000000000895	Endodeoxyribonuclease RusA	N/A
COG	UHGV-1462825_47	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1462825	Yes	35,426	59	81	1