vOTU vOTU-165928

vOTU: vOTU-165928

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-165928
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-05801 → vOTU-165928
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp001916075
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0000452
Biosample ID	N/A
Genome length (bp)	26,613 bps
CheckV completeness	73.78% (Medium-quality)
CDS count	36
CDS density	92.94%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp001916075	Total connections	11	Host agreement	72.73
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium sp900540255	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 73.78)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0000452_1	K07729	65.0	1.5e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0000452_1	phrog_8	97.3	2e-28	transcriptional regulator	transcription regulation
UniRef90	UHGV-0000452_1	UniRef90_UPI0004867CC9	108.0	3.65e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0000452_1	1211817.CCAT010000003_gene272	95.9	9.31e-24	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0000452_1	retron_type_VI_hth_cluster2_1	50.9	0.000000000000022	N/A	Retron
Pfam	UHGV-0000452_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0000452_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0000452_2	UniRef90_UPI00084D082C	52.4	0.000000222	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0000452_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0000452_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0000452_2	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0000452_3	K22299	52.2	0.000000000000014	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0000452_3	phrog_3	44.4	0.000000000007	transcriptional repressor	transcription regulation
UniRef90	UHGV-0000452_3	UniRef90_UPI00085BBE37	82.0	4.15e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0000452_3	1487921.DP68_08680	77.8	3.48e-18	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0000452_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0000452_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0000452_3	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_8	phrog_373	170.2	0	anti-repressor	transcription regulation
UniRef90	UHGV-0000452_8	UniRef90_UPI0018AC2428	345.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0000452_8	1414720.CBYM010000002_gene582	320.0	0	ORF6C domain	N/A
Pfam	UHGV-0000452_8	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0000452_8	PF10552	N/A	N/A	ORF6C domain	ORF6C
NCBIFam	UHGV-0000452_8	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0000452_8	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0000452_8	PF10552,PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0000452_9	K06376	40.4	0.000000000077	spo0E; stage 0 sporulation regulatory protein	N/A
UniRef90	UHGV-0000452_9	UniRef90_UPI001054CA20	58.5	0.000000000201	aspartyl-phosphate phosphatase Spo0E family protein	N/A
Pfam	UHGV-0000452_9	PF09388	N/A	N/A	Spo0E like sporulation regulatory protein	SpoOE-like
structural_annotation	UHGV-0000452_9	PF09388	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_10	phrog_10469	304.6	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000452_10	UniRef90_A0A1C6JID6	455.0	0	Phage replisome organizer, putative, N-terminal region	N/A
eggNOG-mapper	UHGV-0000452_10	1414720.CBYM010000001_gene675	326.0	0	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0000452_10	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0000452_10	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0000452_10	PF09681,PF09524,TIGR01714,TIGR02220,COG3388	N/A	N/A	N/A	N/A
KOfam	UHGV-0000452_11	K02315	133.8	1.7e-39	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0000452_11	phrog_50	143.8	1.3999e-42	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000452_11	UniRef90_UPI0018A8ECBE	446.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0000452_11	1414720.CBYM010000001_gene676	404.0	0	PFAM IstB-like ATP binding protein	N/A
Pfam	UHGV-0000452_11	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0000452_11	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0000452_11	PF01695,MF_01919,NF005378,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0000452_12	K03111	126.6	3.2e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0000452_12	phrog_44	129.7	2.3e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000452_12	UniRef90_UPI0018AC5EC3	218.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0000452_12	1414720.CBYM010000001_gene680	203.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0000452_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0000452_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0000452_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0000452_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0000452_12	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0000452_13	1414720.CBYM010000001_gene681	423.0	0	N/A	N/A
PHROG	UHGV-0000452_14	phrog_17088	55.7	0.0000000000000011	N/A	unknown function
UniRef90	UHGV-0000452_14	UniRef90_UPI00115C0CAD	166.0	0	GTP-binding protein	N/A
PHROG	UHGV-0000452_15	phrog_98	76.2	3.7e-22	N/A	unknown function
UniRef90	UHGV-0000452_15	UniRef90_UPI001C8DE272	117.0	8.18e-31	YopX family protein	N/A
eggNOG-mapper	UHGV-0000452_15	469604.HMPREF0946_01119	56.6	0.0000000372	YopX protein	N/A
Pfam	UHGV-0000452_15	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0000452_15	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000452_16	UniRef90_UPI0018A8EB18	187.0	0	N/A	N/A
eggNOG-mapper	UHGV-0000452_16	1414720.CBYM010000040_gene1638	281.0	0	N/A	N/A
structural_annotation	UHGV-0000452_16	PF04545,MF_00683,NF008895	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_17	phrog_3928	44.4	0.0000000000024	N/A	unknown function
eggNOG-mapper	UHGV-0000452_17	1414720.CBYM010000040_gene1639	94.0	4.81e-25	N/A	N/A
KOfam	UHGV-0000452_18	K04763	108.1	1.1e-31	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0000452_18	phrog_216	150.3	8.40779e-45	integrase	integration and excision
UniRef90	UHGV-0000452_18	UniRef90_A0A1F1KZD3	315.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0000452_18	1415774.U728_1259	320.0	0	integrase family	N/A
Pfam	UHGV-0000452_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0000452_18	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0000452_18	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0000452_19	K07451	46.0	0.000000000001	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0000452_19	phrog_119	91.6	9.2e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0000452_19	UniRef90_A0A1I0FF39	129.0	7.29e-37	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0000452_19	86416.Clopa_0335	114.0	1.19e-31	HNH nucleases	N/A
Pfam	UHGV-0000452_19	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0000452_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0000452_20	phrog_5110	108.0	3.3e-32	terminase small subunit	head and packaging
UniRef90	UHGV-0000452_20	UniRef90_A0A1B9BRT3	216.0	0	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0000452_20	1211817.CCAT010000008_gene938	207.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0000452_20	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0000452_20	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0000452_20	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000452_20	PF05119,PF06056,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_21	phrog_9	308.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0000452_21	UniRef90_A0A3F2ZWA0	844.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0000452_21	1211817.CCAT010000008_gene939	847.0	0	Phage Terminase	N/A
Pfam	UHGV-0000452_21	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0000452_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0000452_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0000452_21	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_22	phrog_12	140.2	1.10002e-41	portal protein	head and packaging
UniRef90	UHGV-0000452_22	UniRef90_A0A3F2ZSC3	450.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0000452_22	1211817.CCAT010000008_gene940	444.0	0	Phage portal protein	N/A
Pfam	UHGV-0000452_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0000452_22	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0000452_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0000452_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0000452_23	K06904	170.6	0	N/A	N/A
PHROG	UHGV-0000452_23	phrog_80	177.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0000452_23	UniRef90_A0A173W8F2	290.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0000452_23	1211817.CCAT010000008_gene941	273.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0000452_23	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0000452_23	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0000452_23	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0000452_23	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_24	phrog_10	138.8	4.60004e-41	major head protein	head and packaging
UniRef90	UHGV-0000452_24	UniRef90_A0A0F3FRY7	545.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0000452_24	1211817.CCAT010000008_gene942	522.0	0	Phage capsid family	N/A
Pfam	UHGV-0000452_24	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0000452_24	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0000452_24	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0000452_24	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_25	phrog_749	97.8	6.3e-29	N/A	unknown function
UniRef90	UHGV-0000452_25	UniRef90_UPI0010267962	100.0	1.44e-25	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0000452_25	1450694.BTS2_0540	94.0	6.74e-24	N/A	N/A
Pfam	UHGV-0000452_25	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
UniRef90	UHGV-0000452_26	UniRef90_UPI00189C2B5F	117.0	1.23e-31	phage head closure protein	N/A
eggNOG-mapper	UHGV-0000452_26	411459.RUMOBE_01731	90.5	6.21e-22	Phage head-tail adaptor	N/A
Pfam	UHGV-0000452_26	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0000452_26	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0000452_26	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_27	phrog_5	61.2	2.6e-17	tail completion or Neck1 protein	connector
UniRef90	UHGV-0000452_27	UniRef90_UPI001C8B911A	277.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0000452_27	649747.HMPREF0083_01006	57.0	0.0000000225	Phage protein, HK97 gp10 family	N/A
Pfam	UHGV-0000452_27	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0000452_27	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0000452_27	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_28	phrog_78	76.1	4.7e-22	tail terminator	connector
UniRef90	UHGV-0000452_28	UniRef90_Q8SBP4	99.8	7.68e-25	Gp10 protein	N/A
eggNOG-mapper	UHGV-0000452_28	931276.Cspa_c10200	97.8	7.38e-25	N/A	N/A
structural_annotation	UHGV-0000452_28	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_29	phrog_88	128.9	3.2e-38	major tail protein	tail
UniRef90	UHGV-0000452_29	UniRef90_UPI001159BB09	363.0	0	major tail protein	N/A
eggNOG-mapper	UHGV-0000452_29	411468.CLOSCI_01496	204.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0000452_29	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0000452_29	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0000452_29	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_30	phrog_187	61.4	1.5e-17	head-tail adaptor	connector
eggNOG-mapper	UHGV-0000452_30	411459.RUMOBE_01727	51.2	0.000000913	N/A	N/A
structural_annotation	UHGV-0000452_30	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_31	phrog_1272	429.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0000452_31	UniRef90_UPI001C8CC1D6	762.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0000452_31	1122146.AUHP01000010_gene1066	363.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0000452_31	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0000452_31	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0000452_31	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0000452_31	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_32	phrog_33	92.9	5.7e-27	distal tail protein Dit	tail
UniRef90	UHGV-0000452_32	UniRef90_UPI001C8B5B0F	446.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0000452_32	195103.CPF_1575	186.0	0	tail component	N/A
Pfam	UHGV-0000452_32	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0000452_32	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0000452_32	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0000452_32	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_33	phrog_1067	324.9	0	minor head protein	head and packaging
UniRef90	UHGV-0000452_33	UniRef90_UPI00164A835E	1199.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0000452_33	999411.HMPREF1092_03309	419.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0000452_33	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0000452_33	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0000452_33	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0000452_33	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0000452_34	phrog_21231	55.4	7.4e-16	virion structural protein	head and packaging
UniRef90	UHGV-0000452_34	UniRef90_UPI0018AA7D36	197.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0000452_34	1499683.CCFF01000005_gene81	165.0	5.79003e-41	N/A	N/A
Pfam	UHGV-0000452_34	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0000452_34	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-0000452_35	phrog_2889	287.3	0	N/A	unknown function
UniRef90	UHGV-0000452_35	UniRef90_UPI0014943A95	251.0	0	SUMF1/EgtB/PvdO family nonheme iron enzyme	N/A
eggNOG-mapper	UHGV-0000452_35	1121468.AUBR01000006_gene336	219.0	0	PFAM Formylglycine-generating sulfatase enzyme	N/A
COG	UHGV-0000452_35	COG1262	N/A	N/A	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	N/A
structural_annotation	UHGV-0000452_35	PF03781,COG1262	N/A	N/A	N/A	N/A
UniRef90	UHGV-0000452_36	UniRef90_UPI000DCFCC11	96.7	1.54e-24	iduronate sulfatase	N/A
eggNOG-mapper	UHGV-0000452_36	457396.CSBG_01061	127.0	1.19e-37	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0000452	Yes	26,613	29	74	1