vOTU vOTU-167066

vOTU: vOTU-167066

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-167066
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-01464 → vOTU-167066
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0001463
Biosample ID	N/A
Genome length (bp)	19,735 bps
CheckV completeness	56.65% (Medium-quality)
CDS count	30
CDS density	93.84%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103	Total connections	90	Host agreement	97.78
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0001463_2	phrog_199	66.6	3.1e-19	holin	lysis
UniRef90	UHGV-0001463_2	UniRef90_R5AT18	278.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0001463_2	1121344.JHZO01000003_gene684	145.0	9.55686e-43	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0001463_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0001463_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0001463_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0001463_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0001463_3	K01447	67.3	3.1e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0001463_3	phrog_1794	156.4	0	amidase	lysis
UniRef90	UHGV-0001463_3	UniRef90_R5AZE6	236.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0001463_3	1235793.C809_04312	210.0	0	Ami_2	N/A
Pfam	UHGV-0001463_3	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0001463_3	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0001463_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0001463_3	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0001463_4	phrog_30034	109.8	3.2e-32	N/A	unknown function
UniRef90	UHGV-0001463_4	UniRef90_A0A3D1XGA4	209.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0001463_4	411471.SUBVAR_06976	90.9	6.5e-21	N/A	N/A
Pfam	UHGV-0001463_4	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0001463_5	phrog_8745	40.9	0.0000000000076	tail fiber protein	tail
Pfam	UHGV-0001463_5	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0001463_5	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0001463_6	phrog_24267	95.6	7.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-0001463_6	742742.HMPREF9452_00376	133.0	2.58e-35	tail collar domain protein	N/A
COG	UHGV-0001463_6	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0001463_7	phrog_6616	63.4	3.1e-19	tail protein	tail
structural_annotation	UHGV-0001463_7	PF13550,PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0001463_8	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0001463_9	phrog_124	229.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0001463_9	645991.Sgly_0321	355.0	0	AAA domain	N/A
Pfam	UHGV-0001463_9	PF13479	N/A	N/A	AAA domain	AAA_24
KOfam	UHGV-0001463_10	K03546	72.9	4.2e-21	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0001463_10	phrog_1499	467.2	0	N/A	unknown function
UniRef90	UHGV-0001463_10	UniRef90_A0A3E0QS83	521.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-0001463_10	645991.Sgly_0320	508.0	0	domain protein	N/A
Pfam	UHGV-0001463_10	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0001463_10	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0001463_10	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-0001463_11	phrog_3777	41.3	0.000000000015	N/A	unknown function
UniRef90	UHGV-0001463_11	UniRef90_UPI00166EB92C	72.0	0.0000000000000167	N/A	N/A
eggNOG-mapper	UHGV-0001463_11	767817.Desgi_3545	50.8	0.000000946	N/A	N/A
Pfam	UHGV-0001463_11	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0001463_11	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0001463_11	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-0001463_12	phrog_474	115.3	8.5e-34	phosphofructokinase	other
UniRef90	UHGV-0001463_12	UniRef90_A0A7V6W4J9	112.0	1.7e-29	N/A	N/A
eggNOG-mapper	UHGV-0001463_12	665956.HMPREF1032_00639	111.0	7.24e-30	N/A	N/A
Pfam	UHGV-0001463_12	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0001463_12	PF19905	N/A	N/A	N/A	N/A
Pfam	UHGV-0001463_14	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0001463_14	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0001463_14	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0001463_15	phrog_38832	46.6	0.00000000000055	N/A	unknown function
PHROG	UHGV-0001463_16	phrog_424	103.2	2.6e-30	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0001463_16	UniRef90_R6PFX4	431.0	0	Putative phage reductase	N/A
eggNOG-mapper	UHGV-0001463_16	272563.CD630_09300	109.0	7.15e-26	N/A	N/A
PADLOC	UHGV-0001463_16	SspD_00001	45.2	0.0000000000026	SspD	SSP
COG	UHGV-0001463_16	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0001463_16	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0001463_22	phrog_38679	60.3	3.1e-17	N/A	unknown function
KOfam	UHGV-0001463_24	K18830	54.0	0.0000000000000047	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-0001463_24	UniRef90_A0A1C5PSE5	125.0	2.04e-34	Predicted transcriptional regulator	N/A
eggNOG-mapper	UHGV-0001463_24	445972.ANACOL_03315	109.0	3.55e-29	N/A	N/A
Pfam	UHGV-0001463_24	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0001463_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0001463_24	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0001463_26	K07729	59.6	7.7e-17	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0001463_26	UniRef90_R5AVU4	93.2	9.67e-24	CI-like repressor	N/A
eggNOG-mapper	UHGV-0001463_26	1120971.AUCA01000073_gene2914	57.4	0.000000000276	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0001463_26	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0001463_26	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0001463_26	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0001463_27	K07448	133.4	1.8e-39	mrr; restriction system protein	N/A
PHROG	UHGV-0001463_27	phrog_19856	50.2	0.000000000000029	N/A	unknown function
UniRef90	UHGV-0001463_27	UniRef90_A0A5C1WIF7	86.3	8.27e-16	Restriction endonuclease	N/A
eggNOG-mapper	UHGV-0001463_27	1235790.C805_00010	148.0	1.31e-40	Restriction endonuclease	N/A
PADLOC	UHGV-0001463_27	ZorD1_00005	76.5	2.5e-22	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0001463_27	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0001463_27	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
structural_annotation	UHGV-0001463_27	PF04471,MF_00722,NF040854,COG1787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0001463_28	PF21227	N/A	N/A	N/A	N/A
KOfam	UHGV-0001463_29	K06400	258.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0001463_29	phrog_95	260.3	0	integrase	integration and excision
UniRef90	UHGV-0001463_29	UniRef90_UPI0003130B23	289.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0001463_29	1235798.C817_01900	212.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0001463_29	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0001463_29	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0001463_29	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0001463_29	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0001463_30	632335.Calkr_0056	64.7	0.00000000436	protein carbamoylation	N/A
COG	UHGV-0001463_30	COG0068	N/A	N/A	Hydrogenase maturation factor HypF (carbamoyltransferase)	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0001463	Yes	19,735	55	57	1