vOTU vOTU-167859

vOTU: vOTU-167859

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-167859
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00248 → vGENUS-00598 → vOTU-167859
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1861951
Biosample ID	N/A
Genome length (bp)	31,488 bps
CheckV completeness	57.88% (Medium-quality)
CDS count	41
CDS density	82.85%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Flavonifractor → Flavonifractor plautii	Total connections	77	Host agreement	72.73
PHIST-predicted host lineage	Bacteria → Firmicutes_A	Total connections	8	Host agreement	62.5

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 57.88)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1861951_1	K14060	143.1	2.20004e-42	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1861951_1	phrog_125	176.6	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1861951_1	UniRef90_A0A1M5TXA4	172.0	0	Site-specific DNA recombinase	N/A
eggNOG-mapper	UHGV-1861951_1	1235792.C808_01838	153.0	2.10195e-44	Resolvase, N terminal domain	N/A
Pfam	UHGV-1861951_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1861951_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1861951_1	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1861951_3	phrog_3675	101.0	5.9e-30	N/A	unknown function
UniRef90	UHGV-1861951_3	UniRef90_A0A1V5XCJ6	144.0	1.02015e-42	YjcQ protein	N/A
eggNOG-mapper	UHGV-1861951_3	1235802.C823_04879	123.0	3.72e-35	YjcQ protein	N/A
Pfam	UHGV-1861951_3	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-1861951_3	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
UniRef90	UHGV-1861951_4	UniRef90_A0A810QB23	88.2	1.84e-21	N/A	N/A
Pfam	UHGV-1861951_4	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1861951_4	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1861951_6	phrog_38	205.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1861951_6	UniRef90_A0A318EQM2	488.0	0	Putative phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-1861951_6	1123263.AUKY01000015_gene1608	525.0	0	chromosome segregation	N/A
Pfam	UHGV-1861951_6	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1861951_6	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1861951_6	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1861951_6	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-1861951_7	phrog_314	88.3	9.7e-31	homing endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1861951_7	1399942.U3PCR9_9CAUD	96.3	4.93e-21	NUMOD3 motif (2 copies)	N/A
Pfam	UHGV-1861951_7	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-1861951_7	PF07460	N/A	N/A	NUMOD3 motif	NUMOD3
NCBIFam	UHGV-1861951_7	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
structural_annotation	UHGV-1861951_7	TIGR01453	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1861951_8	COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-1861951_9	phrog_64	209.1	0	portal protein	head and packaging
UniRef90	UHGV-1861951_9	UniRef90_A0A845RCM8	535.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1861951_9	1123263.AUKY01000015_gene1609	360.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1861951_9	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1861951_9	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1861951_10	phrog_115	42.6	0.0000000000096	minor head protein	head and packaging
UniRef90	UHGV-1861951_10	UniRef90_A0A1C5WCC8	399.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
structural_annotation	UHGV-1861951_10	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1861951_12	phrog_909	44.1	0.0000000000027	major head protein	head and packaging
PHROG	UHGV-1861951_13	phrog_29	204.1	0	major head protein	head and packaging
UniRef90	UHGV-1861951_13	UniRef90_A0A7X5DZ98	563.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1861951_13	1347368.HG964404_gene4993	299.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1861951_13	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1861951_13	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1861951_14	1226322.HMPREF1545_00051	155.0	0	N/A	N/A
UniRef90	UHGV-1861951_16	UniRef90_A0A845R6M6	140.0	1.54003e-41	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1861951_16	1298920.KI911353_gene2658	60.1	0.000000000229	N/A	N/A
structural_annotation	UHGV-1861951_16	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1861951_17	phrog_374	213.1	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1861951_17	756499.Desde_1078	167.0	0	N/A	N/A
structural_annotation	UHGV-1861951_17	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-1861951_18	phrog_5	42.3	0.000000000017	tail completion or Neck1 protein	connector
UniRef90	UHGV-1861951_18	UniRef90_UPI001BBD4500	140.0	2.18e-39	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1861951_18	397290.C810_01411	104.0	5.22e-26	N/A	N/A
structural_annotation	UHGV-1861951_18	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1861951_19	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-1861951_20	phrog_158	42.8	0.0000000000085	major tail protein	tail
eggNOG-mapper	UHGV-1861951_20	469596.HMPREF9488_01310	171.0	0	N/A	N/A
structural_annotation	UHGV-1861951_20	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-1861951_21	UniRef90_A0A845R9E6	134.0	4.88e-38	N/A	N/A
Pfam	UHGV-1861951_21	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1861951_21	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-1861951_24	phrog_1535	99.9	2.2e-29	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1861951_24	1121866.AUGK01000003_gene1437	195.0	0	phage tail tape measure protein	N/A
COG	UHGV-1861951_24	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-1861951_25	phrog_1194	65.6	7.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1861951_25	394503.Ccel_3034	73.6	0.00000000000000346	N/A	N/A
structural_annotation	UHGV-1861951_25	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1861951_26	phrog_32744	972.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1861951_26	1120998.AUFC01000030_gene2247	222.0	0	N/A	N/A
structural_annotation	UHGV-1861951_26	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1861951_27	1226322.HMPREF1545_00064	75.5	0.000000000000351	N/A	N/A
structural_annotation	UHGV-1861951_27	PF18459	N/A	N/A	N/A	N/A
PHROG	UHGV-1861951_28	phrog_4628	41.3	0.000000000029	tail fiber assembly	tail
UniRef90	UHGV-1861951_28	UniRef90_UPI001D005220	50.8	0.00000154	toxin-antitoxin system toxin subunit	N/A
eggNOG-mapper	UHGV-1861951_28	1226322.HMPREF1545_00128	103.0	4.14e-27	N/A	N/A
PHROG	UHGV-1861951_29	phrog_937	49.6	0.000000000000038	hemolysin	other
eggNOG-mapper	UHGV-1861951_29	445972.ANACOL_03381	120.0	4.73e-34	N/A	N/A
PHROG	UHGV-1861951_31	phrog_1129	71.5	8.3e-21	holin	lysis
UniRef90	UHGV-1861951_31	UniRef90_A0A1C7FPV3	130.0	9.68e-38	Enolase	N/A
eggNOG-mapper	UHGV-1861951_31	1226322.HMPREF1545_00069	166.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1861951_31	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1861951_31	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1861951_32	K01447	112.2	6.4e-33	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1861951_32	phrog_670	151.3	7.00649e-45	endolysin	lysis
UniRef90	UHGV-1861951_32	UniRef90_U2SBT6	423.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1861951_32	1226322.HMPREF1545_00070	423.0	0	Ami_2	N/A
Pfam	UHGV-1861951_32	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1861951_32	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1861951_32	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1861951_33	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1861951_34	phrog_3754	82.7	2.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-1861951_34	1226322.HMPREF1545_00073	148.0	1.68156e-44	N/A	N/A
PHROG	UHGV-1861951_35	phrog_21718	119.8	1.8e-35	N/A	unknown function
UniRef90	UHGV-1861951_35	UniRef90_A0A285PT36	67.0	0.0000000000541	Consensus disorder prediction	N/A
eggNOG-mapper	UHGV-1861951_35	397290.C810_05210	76.6	0.00000000000000215	N/A	N/A
PHROG	UHGV-1861951_36	phrog_22984	124.9	2.3e-37	N/A	unknown function
PHROG	UHGV-1861951_37	phrog_16490	295.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1861951_37	1226322.HMPREF1545_00076	286.0	0	N/A	N/A
PHROG	UHGV-1861951_38	phrog_20016	191.6	0	N/A	unknown function
UniRef90	UHGV-1861951_38	UniRef90_A0A285PT46	190.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1861951_38	1226322.HMPREF1545_00077	169.0	0	N/A	N/A
structural_annotation	UHGV-1861951_38	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1861951_39	PF12510	N/A	N/A	N/A	N/A
UniRef90	UHGV-1861951_40	UniRef90_A0A7M1RRU0	68.2	0.0000000000432	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1861951_40	1378168.N510_03079	116.0	9.65e-30	N/A	N/A
KOfam	UHGV-1861951_41	K14059	148.4	7.84727e-44	int; integrase	N/A
PHROG	UHGV-1861951_41	phrog_1	153.8	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-1861951_41	UniRef90_A0A1C5W824	604.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1861951_41	445972.ANACOL_01797	249.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1861951_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1861951_41	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1861951_41	PF00589,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1861951	Yes	31,488	49	58	1