vOTU vOTU-168131

vOTU: vOTU-168131

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-168131
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00070 → vSUBFAM-00249 → vGENUS-00211 → vOTU-168131
Host lineage	Bacteria → Firmicutes_A
Host range breadth	Phylum
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0035897
Biosample ID	N/A
Genome length (bp)	54,509 bps
CheckV completeness	76.77% (Medium-quality)
CDS count	84
CDS density	89.86%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A	Total connections	45	Host agreement	62.22
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	9	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0035897_3	UniRef90_A0A8D9PDK2	55.5	0.000000066	Zinc-ribbon containing domain	N/A
structural_annotation	UHGV-0035897_6	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
KOfam	UHGV-0035897_8	K22299	46.5	0.00000000000079	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0035897_8	phrog_8	52.5	0.000000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0035897_8	UniRef90_UPI00195A6681	65.9	0.00000000000151	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0035897_8	1121085.AUCI01000010_gene502	61.2	0.0000000000557	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0035897_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0035897_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0035897_8	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0035897_9	K07496	441.2	0	K07496; putative transposase	N/A
PHROG	UHGV-0035897_9	phrog_506	440.6	0	transposase	integration and excision
UniRef90	UHGV-0035897_9	UniRef90_R5ATH0	577.0	0	Transposase IS605 OrfB family	N/A
eggNOG-mapper	UHGV-0035897_9	457405.FSDG_02416	399.0	0	N/A	N/A
PADLOC	UHGV-0035897_9	V_U4	245.2	0	CAS-V-F; effector__SPE	CRISPR-CAS
Pfam	UHGV-0035897_9	PF12323	N/A	N/A	Helix-turn-helix domain	HTH_OrfB_IS605
Pfam	UHGV-0035897_9	PF01385	N/A	N/A	Probable transposase	OrfB_IS605
Pfam	UHGV-0035897_9	PF07282	N/A	N/A	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
NCBIFam	UHGV-0035897_9	NF038281.1	N/A	N/A	IS200/IS605 family element RNA-guided endonuclease TnpB	N/A
COG	UHGV-0035897_9	COG0675	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-0035897_9	PF07282,PF01385,NF038281,COG0675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035897_11	881953.E0YJ34_9CAUD	120.0	5.73e-26	N/A	N/A
structural_annotation	UHGV-0035897_11	PF04466,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_13	phrog_2739	50.7	1.6e-26	portal protein	head and packaging
structural_annotation	UHGV-0035897_13	PF07230,MF_04135,TIGR01537,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035897_14	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_15	phrog_3313	44.3	0.000000000000097	N/A	unknown function
structural_annotation	UHGV-0035897_15	PF09979,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_17	phrog_4088	62.2	7.3e-18	N/A	unknown function
structural_annotation	UHGV-0035897_17	PF03864,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_19	phrog_1129	73.4	2.1e-21	holin	lysis
UniRef90	UHGV-0035897_19	UniRef90_A0A1Q6RI18	126.0	3.96e-36	Enolase	N/A
eggNOG-mapper	UHGV-0035897_19	1226322.HMPREF1545_00069	115.0	9.45e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0035897_19	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0035897_19	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0035897_21	K08640	96.2	5.4e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0035897_21	phrog_18955	155.2	0	N/A	unknown function
UniRef90	UHGV-0035897_21	UniRef90_UPI001C035E39	583.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0035897_21	1235797.C816_04171	328.0	0	Peptidase M15	N/A
Pfam	UHGV-0035897_21	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0035897_21	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0035897_21	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035897_21	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035897_22	PF10651,NF038186	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035897_23	568816.Acin_1323	59.7	0.000000000241	N/A	N/A
PHROG	UHGV-0035897_24	phrog_13589	56.4	1.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0035897_24	1232428.CAVO010000002_gene2342	160.0	1.4013e-45	ATPase involved in DNA repair	N/A
COG	UHGV-0035897_24	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0035897_26	TIGR02215	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_27	phrog_16444	62.7	2.1e-18	N/A	unknown function
UniRef90	UHGV-0035897_27	UniRef90_A0A3M8AU08	64.7	0.000000108	Ig-like domain-containing protein	N/A
Pfam	UHGV-0035897_27	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0035897_27	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035897_27	PF02368,PF18957,MF_04116,NF040788,COG3291,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035897_30	PF09646	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_31	phrog_937	59.3	7.4e-17	hemolysin	other
UniRef90	UHGV-0035897_31	UniRef90_R5GGW2	51.6	0.00000256	Phosphoglucosamine mutase	N/A
eggNOG-mapper	UHGV-0035897_31	693746.OBV_19000	65.5	0.00000000000142	N/A	N/A
structural_annotation	UHGV-0035897_33	PF06488,PF02368,TIGR01603,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_35	phrog_4211	250.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0035897_35	UniRef90_A0A2V2CTR2	368.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0035897_35	397287.C807_01576	186.0	3.92364e-44	Phage-related minor tail protein	N/A
Pfam	UHGV-0035897_35	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0035897_35	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0035897_35	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0035897_35	PF10145,TIGR01760	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035897_36	PF19266,PF02010,MF_04116,NF032891,TIGR01633,COG3499,COG3506,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_37	phrog_1887	180.6	0	tail protein	tail
structural_annotation	UHGV-0035897_37	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
KOfam	UHGV-0035897_41	K04763	153.0	2.8026e-45	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0035897_41	phrog_1	136.1	2.8e-40	integrase	integration and excision
UniRef90	UHGV-0035897_41	UniRef90_A0A7W0WD13	78.6	0.000000000000629	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0035897_41	1121947.AUHK01000001_gene734	70.9	0.0000000000552	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0035897_41	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0035897_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0035897_41	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0035897_41	PF00589,PF02899,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0035897_42	K04487	245.5	0	iscS, NFS1; cysteine desulfurase [EC:2.8.1.7]	N/A
PHROG	UHGV-0035897_42	phrog_12787	169.5	0	N/A	unknown function
UniRef90	UHGV-0035897_42	UniRef90_A0A6G3LVH5	214.0	0	Cysteine desulfurase IscS	N/A
eggNOG-mapper	UHGV-0035897_42	1297617.JPJD01000029_gene2320	203.0	0	Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins	N/A
PADLOC	UHGV-0035897_42	SspA_00001	186.9	0	SspA	SSP
Pfam	UHGV-0035897_42	PF00266	N/A	N/A	Aminotransferase class-V	Aminotran_5
COG	UHGV-0035897_42	COG1104	N/A	N/A	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	N/A
structural_annotation	UHGV-0035897_42	PF00266,MF_00331,TIGR03403,COG1104	N/A	N/A	N/A	N/A
UniRef90	UHGV-0035897_43	UniRef90_R9JJZ1	62.0	0.0000000000266	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0035897_43	397287.C807_01320	62.0	0.00000000000446	N/A	N/A
structural_annotation	UHGV-0035897_43	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035897_45	PF16450,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035897_46	PF16857,MF_00273,NF001981	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035897_47	TIGR04412	N/A	N/A	N/A	N/A
KOfam	UHGV-0035897_48	K03530	102.3	6.9e-30	hupB; DNA-binding protein HU-beta	N/A
PHROG	UHGV-0035897_48	phrog_379	95.7	2.6e-28	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035897_48	UniRef90_A0A8I1NRM9	97.8	9.12e-25	DNA-binding protein HupB	N/A
eggNOG-mapper	UHGV-0035897_48	1121091.AUMP01000014_gene3411	93.6	7.01e-24	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	N/A
Pfam	UHGV-0035897_48	PF00216	N/A	N/A	Bacterial DNA-binding protein	Bac_DNA_binding
COG	UHGV-0035897_48	COG0776	N/A	N/A	Bacterial nucleoid DNA-binding protein IHF-alpha	N/A
structural_annotation	UHGV-0035897_48	PF00216,MF_00381,NF007945,COG0776	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035897_50	NF040540	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035897_53	TIGR00663,COG0592	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_57	phrog_374	175.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0035897_57	742767.HMPREF9456_02044	129.0	3.88e-35	N/A	N/A
structural_annotation	UHGV-0035897_57	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_58	phrog_19458	374.0	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0035897_58	UniRef90_A0A1V5KAU2	226.0	0	DarA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0035897_58	748224.HMPREF9436_03092	300.0	0	N/A	N/A
COG	UHGV-0035897_58	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
eggNOG-mapper	UHGV-0035897_60	1236976.JCM16418_5054	84.3	2.53e-17	N/A	N/A
UniRef90	UHGV-0035897_63	UniRef90_A0A174ECN7	113.0	1.86e-31	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0035897_63	767817.Desgi_2502	99.8	6.83e-27	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0035897_63	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0035897_63	PF13560,NF000090,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035897_65	PF19891,NF010432	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_71	phrog_3543	54.0	0.000000000000003	N/A	unknown function
UniRef90	UHGV-0035897_71	UniRef90_UPI001EF82D45	93.6	6.5e-22	N/A	N/A
eggNOG-mapper	UHGV-0035897_71	1196031.ALEG01000041_gene2681	90.9	3.41e-22	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein	N/A
COG	UHGV-0035897_71	COG0664	N/A	N/A	cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases	N/A
structural_annotation	UHGV-0035897_71	PF12098,MF_01160,NF041095,COG1993	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_75	phrog_10867	77.6	1.2e-22	N/A	unknown function
KOfam	UHGV-0035897_76	K00571	108.3	8.2e-32	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0035897_76	phrog_23224	194.7	0	DNA methyltransferase	other
UniRef90	UHGV-0035897_76	UniRef90_UPI001CBBED6E	357.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0035897_76	718252.FP2_06750	352.0	0	DNA methylase	N/A
PADLOC	UHGV-0035897_76	MTase_II_00172	98.2	3.5e-30	Type II methyltransferase	RM
Pfam	UHGV-0035897_76	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0035897_76	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0035897_76	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_77	phrog_799	129.0	3.8e-38	DNA methyltransferase	other
UniRef90	UHGV-0035897_77	UniRef90_UPI000AAF359D	254.0	0	SAM-dependent DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0035897_77	1519439.JPJG01000060_gene1874	254.0	0	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0035897_77	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0035897_77	PF05869,MF_00607,TIGR01712,COG0286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0035897_79	PF18337,NF037951	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_80	phrog_5781	97.7	1.1e-28	N/A	unknown function
UniRef90	UHGV-0035897_80	UniRef90_A0A2V2GDQ1	113.0	4.58e-30	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0035897_80	255431.Q6UAS4_9CAUD	97.1	1.75e-24	N/A	N/A
Pfam	UHGV-0035897_80	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0035897_80	PF14359,MF_00510,TIGR03646,COG3613	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0035897_81	1415774.U728_858	117.0	1.17e-31	N/A	N/A
PHROG	UHGV-0035897_82	phrog_38832	74.9	1.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0035897_82	665956.HMPREF1032_00143	83.6	3.68e-18	N/A	N/A
PHROG	UHGV-0035897_83	phrog_8684	69.0	6.5e-22	N/A	unknown function
UniRef90	UHGV-0035897_83	UniRef90_A0A1C6K9I9	128.0	2.55e-35	YopX protein	N/A
eggNOG-mapper	UHGV-0035897_83	1226322.HMPREF1545_00036	67.0	0.00000000000285	YopX protein	N/A
Pfam	UHGV-0035897_83	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0035897_83	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0035897_84	phrog_3136	81.2	1.1e-23	N/A	unknown function
COG	UHGV-0035897_84	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0035897	Yes	54,509	57	77	1