vOTU vOTU-168764

vOTU: vOTU-168764

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-168764
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium saudiense
Taxonomy (UHGV)	vFAM-00035 → vSUBFAM-05311 → vGENUS-11217 → vOTU-168764
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium saudiense
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0100487
Biosample ID	N/A
Genome length (bp)	23,171 bps
CheckV completeness	66.77% (Medium-quality)
CDS count	31
CDS density	90.57%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A	Total connections	5	Host agreement	60
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium saudiense	Total connections	12	Host agreement	83.33

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 66.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0100487_1	1414720.CBYM010000040_gene1631	81.3	1.09e-19	N/A	N/A
KOfam	UHGV-0100487_4	K04763	210.6	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0100487_4	phrog_1	181.0	0	integrase	integration and excision
UniRef90	UHGV-0100487_4	UniRef90_A0A174DBC4	675.0	0	Integrase/recombinase (XerC/CodV family)	N/A
eggNOG-mapper	UHGV-0100487_4	1211817.CCAT010000049_gene2471	268.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0100487_4	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0100487_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0100487_4	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0100487_4	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0100487_6	phrog_248	56.5	6.8e-16	transcriptional activator	transcription regulation
UniRef90	UHGV-0100487_6	UniRef90_A0A174D7N9	251.0	0	Putative alternative sigma factor RpoH	N/A
eggNOG-mapper	UHGV-0100487_6	1443122.Z958_05945	99.4	4.92e-25	N/A	N/A
NCBIFam	UHGV-0100487_6	TIGR01637.1	N/A	N/A	ArpU family phage packaging/lysis transcriptional regulator	N/A
structural_annotation	UHGV-0100487_6	PF08281,MF_00674,TIGR01636,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0100487_7	K04763	109.4	4.9e-32	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0100487_7	phrog_216	161.1	0	integrase	integration and excision
UniRef90	UHGV-0100487_7	UniRef90_A0A174DAV8	377.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0100487_7	97138.C820_00621	201.0	0	integrase family	N/A
Pfam	UHGV-0100487_7	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0100487_7	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0100487_7	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0100487_9	phrog_144	86.4	3.6e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0100487_9	UniRef90_A0A174D6F0	239.0	0	HNH endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0100487_9	1195236.CTER_5117	128.0	1.08e-35	HNH endonuclease	N/A
COG	UHGV-0100487_9	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0100487_10	phrog_83	92.4	5.8e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0100487_10	UniRef90_A0A174DAK8	245.0	0	Phage terminase, small subunit, P27 family	N/A
eggNOG-mapper	UHGV-0100487_10	903814.ELI_3118	94.4	3.94e-23	Phage terminase, small subunit	N/A
Pfam	UHGV-0100487_10	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0100487_10	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0100487_10	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0100487_10	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0100487_11	phrog_9	318.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0100487_11	UniRef90_A0A174D676	1100.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0100487_11	632245.CLP_2619	758.0	0	Terminase	N/A
Pfam	UHGV-0100487_11	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0100487_11	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0100487_11	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0100487_11	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0100487_13	phrog_12	147.0	1.20512e-43	portal protein	head and packaging
UniRef90	UHGV-0100487_13	UniRef90_A0A174D612	823.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0100487_13	1262449.CP6013_1040	282.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0100487_13	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0100487_13	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0100487_13	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0100487_13	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0100487_14	K06904	130.7	1.6e-38	N/A	N/A
PHROG	UHGV-0100487_14	phrog_80	148.9	4.34403e-44	head maturation protease	head and packaging
UniRef90	UHGV-0100487_14	UniRef90_A0A174DA75	336.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0100487_14	1187894.I2E8Y9_9CAUD	229.0	0	peptidase activity	N/A
Pfam	UHGV-0100487_14	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0100487_14	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
structural_annotation	UHGV-0100487_14	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0100487_15	phrog_10	128.6	7.1e-38	major head protein	head and packaging
UniRef90	UHGV-0100487_15	UniRef90_A0A174D5U9	707.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0100487_15	903814.ELI_3113	313.0	0	Phage capsid family	N/A
Pfam	UHGV-0100487_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0100487_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0100487_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0100487_15	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0100487_16	K24213	56.1	4.8e-16	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0100487_16	phrog_5073	73.4	3.5e-21	tail fiber protein	tail
UniRef90	UHGV-0100487_16	UniRef90_A0A174D6L8	154.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0100487_16	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0100487_16	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0100487_17	phrog_40	49.3	0.000000000000079	head-tail adaptor Ad1	connector
UniRef90	UHGV-0100487_17	UniRef90_A0A174D5E0	173.0	0	N/A	N/A
eggNOG-mapper	UHGV-0100487_17	394503.Ccel_2955	116.0	5.83e-33	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0100487_17	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0100487_17	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0100487_17	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0100487_18	phrog_25	49.9	0.000000000000064	head closure Hc1	connector
UniRef90	UHGV-0100487_18	UniRef90_A0A174D5R9	228.0	0	Phage head-tail adaptor	N/A
eggNOG-mapper	UHGV-0100487_18	536233.CLO_1365	78.2	3.19e-17	Phage head-tail joining protein	N/A
Pfam	UHGV-0100487_18	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0100487_18	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0100487_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0100487_20	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0100487_21	phrog_88	50.1	0.000000000000045	major tail protein	tail
structural_annotation	UHGV-0100487_21	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0100487_22	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0100487_24	K10421	61.8	4.4e-18	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0100487_24	phrog_991	104.1	5.4e-31	tail length tape measure protein	tail
UniRef90	UHGV-0100487_24	UniRef90_A0A174D9E5	952.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0100487_24	904144.AEJD01000006_gene569	73.6	0.000000000192	phage tail tape measure protein	N/A
NCBIFam	UHGV-0100487_24	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0100487_24	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0100487_24	PF10145,PF05384,TIGR01760,TIGR02559,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0100487_25	phrog_33	66.7	6.5e-19	distal tail protein Dit	tail
UniRef90	UHGV-0100487_25	UniRef90_A0A174D8K9	478.0	0	Phage tail component	N/A
eggNOG-mapper	UHGV-0100487_25	1280689.AUJC01000011_gene1531	271.0	0	phage tail	N/A
Pfam	UHGV-0100487_25	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0100487_25	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0100487_25	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0100487_25	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0100487_26	K21471	115.8	5.3e-34	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0100487_26	phrog_1067	358.9	0	minor head protein	head and packaging
UniRef90	UHGV-0100487_26	UniRef90_A0A174D559	1638.0	0	Phage structural protein	N/A
eggNOG-mapper	UHGV-0100487_26	1280689.AUJC01000011_gene1532	637.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0100487_26	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0100487_26	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
NCBIFam	UHGV-0100487_26	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0100487_26	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0100487_26	PF14594,TIGR01665,COG4926,COG3942	N/A	N/A	N/A	N/A
KOfam	UHGV-0100487_27	K03651	59.3	6e-17	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-0100487_27	phrog_7158	144.6	5.89947e-43	N/A	unknown function
UniRef90	UHGV-0100487_27	UniRef90_A0A1C6JHI1	1254.0	0	Calcineurin-like phosphoesterase superfamily domain	N/A
eggNOG-mapper	UHGV-0100487_27	1499683.CCFF01000005_gene81	159.0	2.62e-38	N/A	N/A
Pfam	UHGV-0100487_27	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0100487_27	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0100487_27	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-0100487_27	PF10651,PF16255,NF040788,COG2755,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0100487_28	phrog_1863	73.1	2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0100487_28	1414720.CBYM010000001_gene713	161.0	0	N/A	N/A
UniRef90	UHGV-0100487_29	UniRef90_UPI0018A9B2DB	145.0	5.32493e-44	holin	N/A
eggNOG-mapper	UHGV-0100487_29	1041504.RATSFB_0394	50.8	0.000000236	COG5546 Small integral membrane protein	N/A
COG	UHGV-0100487_29	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-0100487_30	K01448	176.1	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0100487_30	phrog_435	167.4	0	endolysin	lysis
UniRef90	UHGV-0100487_30	UniRef90_A0A1C6H888	614.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0100487_30	1414720.CBYM010000005_gene1387	166.0	0	Sporulation related domain	N/A
Pfam	UHGV-0100487_30	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0100487_30	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-0100487_30	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0100487_31	595460.RRSWK_03491	130.0	9.84e-34	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0100487	Yes	23,171	29	67	1