vOTU vOTU-168810

vOTU: vOTU-168810

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-168810
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vGENUS-02232 → vOTU-168810
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0108834
Biosample ID	N/A
Genome length (bp)	40,009 bps
CheckV completeness	69.37% (Medium-quality)
CDS count	77
CDS density	93.26%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	479	Host agreement	96.66
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 69.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0108834_2	K22300	54.4	0.0000000000000033	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0108834_2	phrog_11947	49.0	0.000000000000066	N/A	unknown function
Pfam	UHGV-0108834_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0108834_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0108834_2	PF01381,MF_00535,TIGR03070,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108834_7	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-0108834_8	UniRef90_UPI000D6522D3	57.0	0.00000000948	N/A	N/A
Pfam	UHGV-0108834_8	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0108834_8	PF04448,NF041588	N/A	N/A	N/A	N/A
Pfam	UHGV-0108834_9	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0108834_9	PF04448	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108834_11	MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108834_13	PF03465,COG2331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108834_16	PF11998,COG5420	N/A	N/A	N/A	N/A
PHROG	UHGV-0108834_19	phrog_843	62.7	4.2e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108834_19	UniRef90_UPI001159D907	114.0	6.69e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0108834_19	929506.CbC4_1203	107.0	7.11e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-0108834_19	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108834_21	PF20331,COG5264	N/A	N/A	N/A	N/A
PHROG	UHGV-0108834_22	phrog_35094	93.6	2.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0108834_22	457424.BFAG_02409	117.0	1.68e-33	N/A	N/A
KOfam	UHGV-0108834_24	K00558	157.1	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0108834_24	phrog_116	205.1	0	DNA methyltransferase	other
UniRef90	UHGV-0108834_24	UniRef90_D4JYK0	565.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0108834_24	718252.FP2_16350	565.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0108834_24	oMTase_00004	233.8	0	orphan methyltransferase	RM
Pfam	UHGV-0108834_24	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0108834_24	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0108834_24	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0108834_24	TIGR00675	N/A	N/A	N/A	N/A
PHROG	UHGV-0108834_25	phrog_59	115.9	1.9e-34	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108834_25	UniRef90_UPI0007D9B0A3	150.0	1.10983e-42	NUMOD4 motif-containing HNH endonuclease	N/A
eggNOG-mapper	UHGV-0108834_25	945021.TEH_18310	146.0	5.35997e-42	NUMOD4 motif	N/A
PADLOC	UHGV-0108834_25	HEase_00016	78.9	1.8e-25	homing endonuclease	RM
Pfam	UHGV-0108834_25	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0108834_25	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0108834_25	PF13392,PF20987	N/A	N/A	N/A	N/A
KOfam	UHGV-0108834_26	K03111	110.0	3.8e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0108834_26	phrog_44	119.5	3.2e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108834_26	UniRef90_A0A6N7TNV3	149.0	1.16308e-43	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0108834_26	748224.HMPREF9436_03359	146.0	4.56823e-43	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0108834_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0108834_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0108834_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0108834_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0108834_26	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0108834_27	phrog_155	152.4	2.8026e-45	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108834_27	UniRef90_E2ZNS9	308.0	0	Erf family protein	N/A
eggNOG-mapper	UHGV-0108834_27	748224.HMPREF9436_03360	308.0	0	ERF superfamily	N/A
Pfam	UHGV-0108834_27	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0108834_27	PF04404,COG4712	N/A	N/A	N/A	N/A
Pfam	UHGV-0108834_28	PF13451	N/A	N/A	Probable zinc-ribbon domain	zf-trcl
COG	UHGV-0108834_28	COG1278	N/A	N/A	Cold shock protein, CspA family	N/A
structural_annotation	UHGV-0108834_28	PF13451	N/A	N/A	N/A	N/A
PHROG	UHGV-0108834_29	phrog_38771	64.1	1.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0108834_30	272623.L157023	48.5	0.00000763	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
COG	UHGV-0108834_30	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-0108834_30	PF04606,NF007241,COG3478	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108834_31	PF14143	N/A	N/A	N/A	N/A
Pfam	UHGV-0108834_32	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0108834_32	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108834_34	TIGR03826	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108834_36	PF10922	N/A	N/A	N/A	N/A
KOfam	UHGV-0108834_37	K07741	97.4	4.2e-28	antB; anti-repressor protein	N/A
PHROG	UHGV-0108834_37	phrog_63	198.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0108834_37	UniRef90_A0A844D5R9	320.0	0	Phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-0108834_37	1449343.JQLQ01000002_gene1368	241.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0108834_37	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0108834_37	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0108834_37	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0108834_37	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0108834_37	PF03374,PF09669,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-0108834_38	UniRef90_UPI001956DCC9	73.6	6.21e-16	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0108834_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0108834_38	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0108834_39	phrog_8	43.1	0.000000000009	transcriptional regulator	transcription regulation
UniRef90	UHGV-0108834_39	UniRef90_UPI001D05D211	73.6	0.0000000000000132	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0108834_39	693746.OBV_43290	64.3	0.0000000000164	addiction module antidote protein HigA	N/A
COG	UHGV-0108834_39	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0108834_39	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108834_40	PF16311,NF038219	N/A	N/A	N/A	N/A
UniRef90	UHGV-0108834_44	UniRef90_A0A2A7AM70	191.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0108834_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0108834_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0108834_44	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0108834_46	phrog_4402	109.7	2.7e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108834_46	UniRef90_A0A0H5Q331	286.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0108834_46	999413.HMPREF1094_04438	120.0	2.1e-28	Initiator Replication protein	N/A
Pfam	UHGV-0108834_46	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-0108834_46	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-0108834_46	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-0108834_46	PF01051,PF21205,NF038290,COG5527	N/A	N/A	N/A	N/A
KOfam	UHGV-0108834_48	K03496	240.4	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0108834_48	phrog_164	165.3	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108834_48	UniRef90_A0A1G6FF50	208.0	0	Chromosome partitioning protein	N/A
eggNOG-mapper	UHGV-0108834_48	1408423.JHYA01000021_gene392	190.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-0108834_48	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0108834_48	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0108834_48	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108834_50	PF07878	N/A	N/A	N/A	N/A
KOfam	UHGV-0108834_51	K13525	128.3	3.2e-38	VCP, CDC48; transitional endoplasmic reticulum ATPase	N/A
PHROG	UHGV-0108834_51	phrog_3757	203.2	0	N/A	unknown function
UniRef90	UHGV-0108834_51	UniRef90_A0A4Z0Y6M2	352.0	0	ATP-dependent zinc metalloprotease FtsH 3	N/A
eggNOG-mapper	UHGV-0108834_51	768710.DesyoDRAFT_1087	209.0	0	ATPase family associated with various cellular activities (AAA)	N/A
PADLOC	UHGV-0108834_51	IetA_00002	187.9	0	NA	ietAS
Pfam	UHGV-0108834_51	PF00004	N/A	N/A	ATPase family associated with various cellular activities (AAA)	AAA
COG	UHGV-0108834_51	COG0464	N/A	N/A	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	N/A
structural_annotation	UHGV-0108834_51	PF00004,MF_00553,TIGR01242,COG1222	N/A	N/A	N/A	N/A
Pfam	UHGV-0108834_53	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0108834_54	1378168.N510_03079	97.1	1.2e-21	N/A	N/A
eggNOG-mapper	UHGV-0108834_55	1408437.JNJN01000043_gene802	123.0	1.11e-34	N/A	N/A
PHROG	UHGV-0108834_56	phrog_16490	103.4	5.8e-39	N/A	unknown function
eggNOG-mapper	UHGV-0108834_56	1408437.JNJN01000043_gene803	166.0	0	N/A	N/A
PHROG	UHGV-0108834_59	phrog_21718	41.5	0.00000000002	N/A	unknown function
COG	UHGV-0108834_60	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
NCBIFam	UHGV-0108834_61	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0108834_61	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0108834_63	phrog_24267	85.9	4.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0108834_63	1042156.CXIVA_07170	114.0	3.6e-27	tail collar domain protein	N/A
COG	UHGV-0108834_63	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0108834_63	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0108834_65	phrog_38190	107.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0108834_65	665956.HMPREF1032_02936	109.0	3.59e-27	N/A	N/A
eggNOG-mapper	UHGV-0108834_66	411483.FAEPRAA2165_00757	163.0	0	N/A	N/A
PHROG	UHGV-0108834_67	phrog_263	88.1	6.1e-26	holin	lysis
UniRef90	UHGV-0108834_67	UniRef90_A0A329UCA4	108.0	2.69e-29	Phage holin	N/A
eggNOG-mapper	UHGV-0108834_67	718252.FP2_14360	100.0	7.36e-27	SPP1 phage holin	N/A
Pfam	UHGV-0108834_67	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0108834_67	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0108834_67	PF04688,TIGR01592	N/A	N/A	N/A	N/A
PHROG	UHGV-0108834_68	phrog_1863	75.5	4.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0108834_68	748224.HMPREF9436_00408	106.0	1.91e-29	N/A	N/A
KOfam	UHGV-0108834_69	K07273	159.8	0	acm; lysozyme	N/A
PHROG	UHGV-0108834_69	phrog_291	133.9	1.5e-39	endolysin	lysis
UniRef90	UHGV-0108834_69	UniRef90_UPI001D0EE7D8	257.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0108834_69	748224.HMPREF9436_00154	249.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0108834_69	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0108834_69	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0108834_69	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0108834_72	phrog_6616	217.2	0	tail protein	tail
eggNOG-mapper	UHGV-0108834_72	445971.ANASTE_00088	124.0	9.56e-27	N/A	N/A
structural_annotation	UHGV-0108834_72	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0108834_73	phrog_1194	104.9	4.6e-31	N/A	unknown function
eggNOG-mapper	UHGV-0108834_73	1121866.AUGK01000003_gene1438	98.2	9.96e-25	N/A	N/A
Pfam	UHGV-0108834_73	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0108834_73	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0108834_74	phrog_1535	174.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0108834_74	1121866.AUGK01000003_gene1437	234.0	0	phage tail tape measure protein	N/A
COG	UHGV-0108834_74	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-0108834_75	1121333.JMLH01000047_gene1011	74.7	0.00000000000000168	N/A	N/A
Pfam	UHGV-0108834_76	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0108834_76	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0108834_77	phrog_158	43.4	0.0000000000059	major tail protein	tail
UniRef90	UHGV-0108834_77	UniRef90_UPI001D087591	114.0	7.09e-30	phage tail protein	N/A
eggNOG-mapper	UHGV-0108834_77	1449343.JQLQ01000002_gene1514	57.0	0.0000000389	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0108834_77	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0108834	Yes	40,009	48	69	1
UHGV-1469868	No	40,009	48	69	1