vOTU vOTU-168910

vOTU: vOTU-168910

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-168910
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → UMGS1810 → UMGS1810 → NSJ-50 → NSJ-50 sp014385105
Taxonomy (UHGV)	vFAM-00102 → vOTU-168910
Host lineage	Bacteria → Firmicutes_A → Clostridia → UMGS1810 → UMGS1810 → NSJ-50 → NSJ-50 sp014385105
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0004444
Biosample ID	N/A
Genome length (bp)	31,478 bps
CheckV completeness	62.72% (Medium-quality)
CDS count	48
CDS density	94.38%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Coprococcus → Coprococcus eutactus_A	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → UMGS1810 → UMGS1810 → NSJ-50 → NSJ-50 sp014385105	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 62.72)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0004444_1	UniRef90_P43642	331.0	0	Type II restriction enzyme MunI	N/A
eggNOG-mapper	UHGV-0004444_1	610130.Closa_1184	282.0	0	Type II restriction enzyme MunI	N/A
PADLOC	UHGV-0004444_1	REase_II_00122	358.5	0	Type II restriction enzyme	RM
Pfam	UHGV-0004444_1	PF11407	N/A	N/A	Type II restriction enzyme MunI	RestrictionMunI
KOfam	UHGV-0004444_2	K23779	64.1	3.4e-18	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0004444_2	phrog_8	50.7	0.000000000000043	transcriptional regulator	transcription regulation
UniRef90	UHGV-0004444_2	UniRef90_UPI0006DC1E58	99.0	6.7e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0004444_2	610130.Closa_1185	95.9	1.87e-25	Transcriptional	N/A
PADLOC	UHGV-0004444_2	Control_protein_00002	84.7	1.3e-24	control protein	RM
Pfam	UHGV-0004444_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0004444_2	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0004444_2	PF01381,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0004444_3	K05925	52.0	0.0000000000000013	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	N/A
PHROG	UHGV-0004444_3	phrog_359	189.1	0	DNA methyltransferase	other
UniRef90	UHGV-0004444_3	UniRef90_UPI0006BF3D9C	400.0	0	MT-A70 family methyltransferase	N/A
eggNOG-mapper	UHGV-0004444_3	471875.RUMLAC_02189	380.0	0	Belongs to the MT-A70-like family	N/A
PADLOC	UHGV-0004444_3	MTase_II_00048	222.2	0	Type II methyltransferase	RM
Pfam	UHGV-0004444_3	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-0004444_3	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
KOfam	UHGV-0004444_4	K06400	403.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0004444_4	phrog_95	395.5	0	integrase	integration and excision
UniRef90	UHGV-0004444_4	UniRef90_R5EAU3	457.0	0	Resolvase domain protein	N/A
eggNOG-mapper	UHGV-0004444_4	903814.ELI_1010	459.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0004444_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0004444_4	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0004444_4	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0004444_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0004444_4	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0004444_6	K01356	75.2	1.2e-21	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0004444_6	phrog_4	83.5	4.4e-32	transcriptional repressor	transcription regulation
UniRef90	UHGV-0004444_6	UniRef90_R5F684	158.0	1.76998e-41	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0004444_6	861454.HMPREF9099_00331	124.0	2.93e-31	Peptidase S24-like	N/A
Pfam	UHGV-0004444_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0004444_6	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0004444_6	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0004444_6	PF00717,PF13560,MF_00015,TIGR00498,NF007257,COG2932,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004444_7	UniRef90_A0A233W5Z2	87.8	2.32e-21	N/A	N/A
eggNOG-mapper	UHGV-0004444_7	272623.L39394	79.0	1.25e-18	N/A	N/A
Pfam	UHGV-0004444_7	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0004444_7	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0004444_7	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0004444_11	phrog_21613	70.1	2.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0004444_11	1120998.AUFC01000030_gene2214	122.0	1.33e-32	N/A	N/A
KOfam	UHGV-0004444_12	K03546	48.7	0.000000000000061	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0004444_12	phrog_1499	281.6	0	N/A	unknown function
UniRef90	UHGV-0004444_12	UniRef90_A0A1C6FNE5	640.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0004444_12	1120998.AUFC01000030_gene2215	651.0	0	DNA recombination	N/A
Pfam	UHGV-0004444_12	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0004444_12	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-0004444_12	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0004444_13	phrog_1227	246.6	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004444_13	UniRef90_A0A3D0X749	333.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004444_13	1120998.AUFC01000030_gene2216	280.0	0	N/A	N/A
Pfam	UHGV-0004444_13	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0004444_13	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0004444_13	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-0004444_14	K03111	119.1	6.2e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0004444_14	phrog_44	127.0	1.5e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004444_14	UniRef90_R6MUJ6	122.0	4.83e-33	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0004444_14	397291.C804_00927	117.0	6.16e-32	Single-strand binding protein family	N/A
Pfam	UHGV-0004444_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0004444_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0004444_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0004444_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0004444_14	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0004444_15	phrog_3490	134.8	5.19999e-40	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004444_15	UniRef90_A0A1C6FNL5	209.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0004444_15	887325.HMPREF0381_0094	186.0	0	N/A	N/A
Pfam	UHGV-0004444_15	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0004444_15	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0004444_16	K02316	91.8	8.5e-27	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0004444_16	phrog_11992	124.5	9.1e-37	N/A	unknown function
UniRef90	UHGV-0004444_16	UniRef90_A0A1G9M235	86.7	4.16e-17	CHC2 zinc finger	N/A
eggNOG-mapper	UHGV-0004444_16	877411.JMMA01000002_gene611	90.5	5.64e-20	CHC2 zinc finger	N/A
PADLOC	UHGV-0004444_16	drt-UG29	69.9	2.5e-20	DRT	DRT
Pfam	UHGV-0004444_16	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0004444_16	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
PHROG	UHGV-0004444_17	phrog_8841	502.4	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004444_17	UniRef90_UPI001031DFED	665.0	0	N/A	N/A
eggNOG-mapper	UHGV-0004444_17	742738.HMPREF9460_02495	474.0	0	N/A	N/A
Pfam	UHGV-0004444_17	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0004444_17	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0004444_17	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004444_17	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
PHROG	UHGV-0004444_18	phrog_478	131.3	3.7e-39	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0004444_18	UniRef90_A0A373Q857	193.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0004444_18	1111121.HMPREF1247_0834	101.0	9.2e-26	N/A	N/A
structural_annotation	UHGV-0004444_21	PF18300,MF_01549,NF007981	N/A	N/A	N/A	N/A
PHROG	UHGV-0004444_24	phrog_8684	86.1	2.1e-25	N/A	unknown function
UniRef90	UHGV-0004444_24	UniRef90_UPI001D033076	89.7	2.29e-20	YopX family protein	N/A
eggNOG-mapper	UHGV-0004444_24	411470.RUMGNA_02199	71.6	0.0000000000000721	N/A	N/A
Pfam	UHGV-0004444_24	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0004444_24	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0004444_24	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004444_28	1232449.BAHV02000018_gene1537	158.0	0	N/A	N/A
PHROG	UHGV-0004444_29	phrog_3136	114.5	3.3e-35	N/A	unknown function
UniRef90	UHGV-0004444_29	UniRef90_UPI001A9A8D4F	117.0	1.25e-29	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0004444_29	97139.C824_00742	73.2	0.0000000000000787	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0004444_29	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0004444_29	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0004444_29	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004444_32	1226322.HMPREF1545_00288	62.8	0.0000000000137	N/A	N/A
structural_annotation	UHGV-0004444_33	PF06056,COG2963	N/A	N/A	N/A	N/A
KOfam	UHGV-0004444_34	K06909	135.1	6.2e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0004444_34	phrog_979	166.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0004444_34	UniRef90_A0A355JD48	625.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0004444_34	1232449.BAHV02000016_gene1824	417.0	0	N/A	N/A
Pfam	UHGV-0004444_34	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0004444_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0004444_34	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0004444_38	phrog_156	112.1	6.8e-34	portal protein	head and packaging
eggNOG-mapper	UHGV-0004444_38	588581.Cpap_1526	351.0	0	N/A	N/A
structural_annotation	UHGV-0004444_38	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-0004444_40	phrog_14242	135.8	2.6e-40	major head protein	head and packaging
UniRef90	UHGV-0004444_40	UniRef90_A0A355JD53	605.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0004444_40	588581.Cpap_1528	161.0	8.4218e-43	N/A	N/A
NCBIFam	UHGV-0004444_40	NF033394.1	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0004444_40	PF17236,MF_04133,NF033394,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004444_42	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0004444_43	phrog_511	78.4	6.3e-23	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0004444_43	1449126.JQKL01000002_gene1688	114.0	2.09e-24	N/A	N/A
structural_annotation	UHGV-0004444_46	PF10618	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004444_47	PF09144,NF038393	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0004444	Yes	31,478	41	63	1