vOTU vOTU-169206

vOTU: vOTU-169206

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-169206
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00011 → vOTU-169206
Host lineage
Host range breadth
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0219995
Biosample ID	SAMN11391599
Genome length (bp)	31,644 bps
CheckV completeness	87.55% (Medium-quality)
CDS count	48
CDS density	93.89%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.55)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0219995_2	phrog_989	62.2	5.8e-18	N/A	unknown function
UniRef90	UHGV-0219995_2	UniRef90_UPI001F4559C5	55.5	0.0000000079	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0219995_2	1235799.C818_03395	47.8	0.00000153	N/A	N/A
structural_annotation	UHGV-0219995_2	PF11372	N/A	N/A	N/A	N/A
PHROG	UHGV-0219995_5	phrog_253	143.9	7.90332e-43	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0219995_5	UniRef90_UPI001898EED4	137.0	1.92e-38	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0219995_5	1226322.HMPREF1545_04074	129.0	6.82e-36	Siphovirus Gp157	N/A
Pfam	UHGV-0219995_5	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0219995_5	PF05565,NF002139	N/A	N/A	N/A	N/A
UniRef90	UHGV-0219995_6	UniRef90_A0A2S0KPA8	123.0	4.24e-34	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0219995_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0219995_7	phrog_2872	185.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0219995_7	UniRef90_A0A2S0KP85	409.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0219995_7	1304866.K413DRAFT_0827	220.0	0	AAA domain	N/A
Pfam	UHGV-0219995_7	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0219995_7	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0219995_8	phrog_18107	137.4	9.79998e-41	N/A	unknown function
UniRef90	UHGV-0219995_8	UniRef90_A0A412CGY7	98.6	1.14e-22	N/A	N/A
eggNOG-mapper	UHGV-0219995_8	397290.C810_05167	132.0	3.27e-36	N/A	N/A
structural_annotation	UHGV-0219995_8	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-0219995_9	K02316	59.6	5.1e-17	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0219995_9	phrog_11992	99.5	4.8e-29	N/A	unknown function
UniRef90	UHGV-0219995_9	UniRef90_A0A847K744	129.0	3.56e-35	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-0219995_9	411460.RUMTOR_02069	68.6	0.00000000000282	CHC2 zinc finger	N/A
PADLOC	UHGV-0219995_9	drt-cluster192	61.2	2.5e-17	DRT	DRT
Pfam	UHGV-0219995_9	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0219995_9	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0219995_9	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0219995_10	phrog_8841	452.2	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0219995_10	UniRef90_A0A847K9P2	510.0	0	N/A	N/A
eggNOG-mapper	UHGV-0219995_10	1007096.BAGW01000023_gene149	399.0	0	N/A	N/A
Pfam	UHGV-0219995_10	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0219995_10	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0219995_10	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0219995_10	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0219995_11	K19789	315.8	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0219995_11	phrog_16	281.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0219995_11	UniRef90_A0A847K403	451.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0219995_11	1121428.DESHY_20120___1	336.0	0	type III restriction enzyme, res subunit	N/A
PADLOC	UHGV-0219995_11	mREase_IV_00005	102.8	6.3e-33	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0219995_11	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0219995_11	PF18766	N/A	N/A	SWI2/SNF2 ATPase	SWI2_SNF2
Pfam	UHGV-0219995_11	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0219995_11	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0219995_11	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0219995_12	phrog_5702	79.6	1.8e-23	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0219995_12	UniRef90_A0A2S0KQ45	149.0	4.2039e-45	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0219995_12	1347392.CCEZ01000005_gene1219	84.7	7.77e-20	VRR_NUC	N/A
Pfam	UHGV-0219995_12	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0219995_12	PF01870,MF_00130,NF002581,COG1591	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0219995_15	562981.HMPREF0428_00991	55.5	0.000000367	N/A	N/A
PHROG	UHGV-0219995_19	phrog_36	46.5	0.00000000000071	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0219995_19	1278311.AUAL01000001_gene42	51.2	0.00000309	sigma factor activity	N/A
COG	UHGV-0219995_19	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
PHROG	UHGV-0219995_20	phrog_3243	135.2	4.6e-40	N/A	unknown function
eggNOG-mapper	UHGV-0219995_20	1321820.HMPREF1983_00911	84.7	3.61e-16	N/A	N/A
structural_annotation	UHGV-0219995_20	PF15072,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-0219995_22	phrog_2277	72.4	3.8e-21	N/A	unknown function
UniRef90	UHGV-0219995_22	UniRef90_A0A7U9GKL5	63.2	0.00000000000951	N/A	N/A
eggNOG-mapper	UHGV-0219995_22	1121947.AUHK01000002_gene955	80.1	4.64e-19	N/A	N/A
KOfam	UHGV-0219995_23	K07451	54.2	0.0000000000000032	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0219995_23	phrog_119	87.5	1.6e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0219995_23	UniRef90_UPI000F54C4DC	131.0	9.82e-38	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0219995_23	926561.KB900623_gene763	103.0	3.64e-27	HNH nucleases	N/A
Pfam	UHGV-0219995_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0219995_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0219995_24	phrog_5110	127.1	4.7e-38	terminase small subunit	head and packaging
UniRef90	UHGV-0219995_24	UniRef90_UPI001E64C17F	112.0	7.62e-30	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0219995_24	349161.Dred_2608	112.0	1.87e-30	N/A	N/A
Pfam	UHGV-0219995_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
PHROG	UHGV-0219995_25	phrog_9	319.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0219995_25	UniRef90_UPI001F37A08E	624.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0219995_25	1423775.BAMN01000009_gene399	579.0	0	Phage Terminase	N/A
Pfam	UHGV-0219995_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0219995_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0219995_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0219995_25	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0219995_26	phrog_12	119.4	2e-35	portal protein	head and packaging
UniRef90	UHGV-0219995_26	UniRef90_A0A1I3C250	417.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0219995_26	1123315.AUIP01000014_gene1949	337.0	0	portal protein	N/A
Pfam	UHGV-0219995_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0219995_26	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0219995_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0219995_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0219995_27	K01358	145.7	4.49817e-43	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0219995_27	phrog_94	234.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0219995_27	UniRef90_UPI00041001D5	196.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0219995_27	1123315.AUIP01000014_gene1950	177.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0219995_27	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0219995_27	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0219995_27	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0219995_28	phrog_10	121.3	9.7e-36	major head protein	head and packaging
UniRef90	UHGV-0219995_28	UniRef90_UPI001AE61B3A	363.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0219995_28	936140.AEOT01000014_gene1357	358.0	0	Phage capsid family	N/A
Pfam	UHGV-0219995_28	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0219995_28	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0219995_28	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0219995_28	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0219995_29	phrog_390	43.1	0.0000000000076	Arc-like repressor	transcription regulation
PHROG	UHGV-0219995_30	phrog_749	83.0	2.6e-24	N/A	unknown function
UniRef90	UHGV-0219995_30	UniRef90_A0A3F3A0Q7	65.9	0.00000000000385	Gp6 protein	N/A
eggNOG-mapper	UHGV-0219995_30	1408823.AXUS01000025_gene2624	84.3	2.59e-20	N/A	N/A
structural_annotation	UHGV-0219995_30	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0219995_31	phrog_5635	99.2	3.2e-29	head-tail adaptor	connector
UniRef90	UHGV-0219995_31	UniRef90_UPI000556E09B	100.0	5.96e-25	phage head closure protein	N/A
eggNOG-mapper	UHGV-0219995_31	936140.AEOT01000014_gene1359	91.7	2.36e-22	N/A	N/A
structural_annotation	UHGV-0219995_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0219995_32	936140.AEOT01000014_gene1360	69.3	0.000000000000165	N/A	N/A
PHROG	UHGV-0219995_33	phrog_5509	111.7	4.7e-33	neck protein	connector
eggNOG-mapper	UHGV-0219995_33	936140.AEOT01000014_gene1361	125.0	3.6e-35	N/A	N/A
structural_annotation	UHGV-0219995_33	TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0219995_34	UniRef90_A0A4D6A254	159.0	1.4013e-45	Structural component	N/A
eggNOG-mapper	UHGV-0219995_34	1220589.CD32_01695	155.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0219995_34	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0219995_35	phrog_5802	52.8	0.0000000000000068	N/A	unknown function
PHROG	UHGV-0219995_37	phrog_58	221.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0219995_37	UniRef90_UPI001E48248A	210.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0219995_37	904144.AEJD01000006_gene569	358.0	0	phage tail tape measure protein	N/A
NCBIFam	UHGV-0219995_37	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0219995_37	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0219995_37	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0219995_38	phrog_33	88.5	1.3e-25	distal tail protein Dit	tail
UniRef90	UHGV-0219995_38	UniRef90_A0A143Z9F2	189.0	0	Siphovirus-type tail component	N/A
eggNOG-mapper	UHGV-0219995_38	1462527.CCDM010000003_gene3728	147.0	6.73997e-41	tail component	N/A
COG	UHGV-0219995_38	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0219995_38	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0219995_39	phrog_5555	287.6	0	tail protein	tail
UniRef90	UHGV-0219995_39	UniRef90_A0A4D6B0C8	348.0	0	Endopeptidase	N/A
eggNOG-mapper	UHGV-0219995_39	1123315.AUIP01000014_gene1962	332.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0219995_39	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0219995_39	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0219995_39	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0219995_39	PF06605,PF21683,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0219995_40	phrog_372	319.9	0	tail protein	tail
UniRef90	UHGV-0219995_40	UniRef90_UPI001C0AA9E4	197.0	0	N/A	N/A
eggNOG-mapper	UHGV-0219995_40	1035189.HMPREF9954_0321	178.0	1.4013e-45	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-0219995_40	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0219995_40	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0219995_40	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
KOfam	UHGV-0219995_42	K01447	45.7	0.0000000000011	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0219995_42	phrog_7698	184.3	0	endolysin	lysis
UniRef90	UHGV-0219995_42	UniRef90_A0A2S0KP84	347.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0219995_42	525282.HMPREF0391_10131	159.0	1.26117e-44	Cpl-7 lysozyme C-terminal domain protein	N/A
Pfam	UHGV-0219995_42	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0219995_42	PF05036	N/A	N/A	SPOR domain	SPOR
Pfam	UHGV-0219995_42	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0219995_42	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0219995_42	PF08230,PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0219995_44	phrog_881	88.1	4.7e-26	holin	lysis
UniRef90	UHGV-0219995_44	UniRef90_A0A2S0KP47	137.0	7.92995e-41	Holin	N/A
eggNOG-mapper	UHGV-0219995_44	565664.EFXG_03970	74.3	1.83e-16	Putative phage holin Dp-1	N/A
Pfam	UHGV-0219995_44	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
PHROG	UHGV-0219995_45	phrog_2277	60.5	2.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0219995_45	1121947.AUHK01000041_gene154	63.9	0.000000000000884	N/A	N/A
KOfam	UHGV-0219995_46	K14059	233.3	0	int; integrase	N/A
PHROG	UHGV-0219995_46	phrog_1	225.5	0	integrase	integration and excision
UniRef90	UHGV-0219995_46	UniRef90_A0A7X8DC23	310.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0219995_46	140626.JHWB01000009_gene1327	225.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0219995_46	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0219995_46	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0219995_46	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0219995_46	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0219995_46	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0219995	Yes	31,644	36	88	1