vOTU vOTU-169789

vOTU: vOTU-169789

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-169789
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00317 → vGENUS-00274 → vOTU-169789
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0020028
Biosample ID	N/A
Genome length (bp)	27,005 bps
CheckV completeness	73.87% (Medium-quality)
CDS count	38
CDS density	93.92%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	63	Host agreement	93.65
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 73.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0020028_2	K02314	237.2	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0020028_2	phrog_19	227.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020028_2	UniRef90_A0A3D1V9Y4	234.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0020028_2	663278.Ethha_2283	147.0	6.84e-37	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0020028_2	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0020028_2	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0020028_2	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0020028_2	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0020028_3	K03496	189.3	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0020028_3	phrog_164	161.4	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0020028_3	UniRef90_A0A845R968	305.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0020028_3	742738.HMPREF9460_00854	200.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0020028_3	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0020028_3	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0020028_3	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0020028_4	K03497	78.1	5.4e-23	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0020028_4	phrog_27290	335.4	0	N/A	unknown function
UniRef90	UHGV-0020028_4	UniRef90_UPI0003130F10	287.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0020028_4	1007096.BAGW01000033_gene1613	287.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0020028_4	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0020028_4	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0020028_4	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0020028_7	K00571	83.3	4.1e-25	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0020028_7	phrog_67	62.8	2.3e-26	DNA methyltransferase	other
UniRef90	UHGV-0020028_7	UniRef90_A0A2N2CPV8	301.0	0	Methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0020028_7	1268240.ATFI01000007_gene431	199.0	0	DNA methylase	N/A
PADLOC	UHGV-0020028_7	MTase_II_00172	120.4	1.8e-35	Type II methyltransferase	RM
Pfam	UHGV-0020028_7	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0020028_7	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0020028_7	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0020028_8	phrog_3584	125.2	5.4e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0020028_8	742738.HMPREF9460_00867	125.0	3.86e-32	N/A	N/A
structural_annotation	UHGV-0020028_8	PF01446,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020028_9	UniRef90_R6M5E4	115.0	2.26e-31	Prophage LambdaBa04 GP54	N/A
eggNOG-mapper	UHGV-0020028_9	1235793.C809_01915	120.0	1.37e-33	HNH endonuclease	N/A
COG	UHGV-0020028_9	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0020028_10	phrog_1066	115.0	3.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-0020028_10	1382358.JHVN01000024_gene1703	105.0	8.82e-28	N/A	N/A
structural_annotation	UHGV-0020028_10	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0020028_11	phrog_9	398.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0020028_11	UniRef90_UPI001D07C789	795.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0020028_11	1203606.HMPREF1526_00981	755.0	0	Terminase	N/A
Pfam	UHGV-0020028_11	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0020028_11	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0020028_11	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0020028_11	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0020028_12	phrog_12	173.2	0	portal protein	head and packaging
UniRef90	UHGV-0020028_12	UniRef90_A0A3B8U1I5	462.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0020028_12	1203606.HMPREF1526_00980	460.0	0	Portal protein	N/A
Pfam	UHGV-0020028_12	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0020028_12	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0020028_12	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0020028_13	K01358	134.9	8.1e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0020028_13	phrog_94	201.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0020028_13	UniRef90_U4R420	258.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0020028_13	1203606.HMPREF1526_00979	218.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0020028_13	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0020028_13	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0020028_13	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0020028_14	phrog_10	171.2	0	major head protein	head and packaging
UniRef90	UHGV-0020028_14	UniRef90_UPI0018AA1B7F	354.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0020028_14	1203606.HMPREF1526_00978	325.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0020028_14	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0020028_14	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0020028_14	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0020028_14	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0020028_15	phrog_5223	55.8	6.1e-16	neck protein	connector
UniRef90	UHGV-0020028_15	UniRef90_UPI000BEC4770	61.6	0.000000000205	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0020028_15	411465.PEPMIC_00737	61.2	0.0000000000499	N/A	N/A
structural_annotation	UHGV-0020028_15	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0020028_16	phrog_1951	81.0	9.7e-24	head-tail adaptor	connector
UniRef90	UHGV-0020028_16	UniRef90_A0A890FC27	73.9	0.00000000000000545	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0020028_16	1121428.DESHY_20140___1	70.5	0.0000000000000215	head-tail adaptor	N/A
COG	UHGV-0020028_16	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0020028_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020028_17	1203606.HMPREF1526_00975	80.9	2.87e-18	N/A	N/A
structural_annotation	UHGV-0020028_17	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0020028_18	1203606.HMPREF1526_00974	90.9	3.41e-21	N/A	N/A
structural_annotation	UHGV-0020028_18	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0020028_19	phrog_88	55.5	7.2e-16	major tail protein	tail
UniRef90	UHGV-0020028_19	UniRef90_A0A174CNN5	66.6	0.000000000448	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0020028_19	1195236.CTER_5106	72.8	0.000000000000341	phage major tail protein, phi13 family	N/A
COG	UHGV-0020028_19	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020028_19	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020028_20	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0020028_22	phrog_13338	114.3	1e-33	N/A	unknown function
UniRef90	UHGV-0020028_22	UniRef90_A0A174XMM8	177.0	2.24208e-44	Tail tape measure protein TP901 core region	N/A
eggNOG-mapper	UHGV-0020028_22	1195236.CTER_5104	161.0	1.71e-39	nuclear chromosome segregation	N/A
Pfam	UHGV-0020028_22	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0020028_22	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0020028_22	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0020028_23	phrog_37549	67.1	4.6e-23	virion structural protein	head and packaging
UniRef90	UHGV-0020028_23	UniRef90_A0A3D0W045	216.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0020028_23	1161901.I1TLF2_9CAUD	97.1	8.09e-18	N/A	N/A
structural_annotation	UHGV-0020028_23	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0020028_24	phrog_26795	112.4	1.6e-33	N/A	unknown function
eggNOG-mapper	UHGV-0020028_24	796940.HMPREF9628_00133	92.8	1.98e-18	N/A	N/A
structural_annotation	UHGV-0020028_24	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020028_25	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0020028_26	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0020028_28	phrog_13589	169.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0020028_28	742733.HMPREF9469_05009	231.0	0	N/A	N/A
eggNOG-mapper	UHGV-0020028_29	742733.HMPREF9469_05009	57.0	0.000000819	N/A	N/A
structural_annotation	UHGV-0020028_29	PF07210,PF01404,TIGR03000,NF038128,COG2512	N/A	N/A	N/A	N/A
PHROG	UHGV-0020028_31	phrog_27545	83.1	3.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0020028_31	1122971.BAME01000151_gene6566	103.0	2.13e-25	N/A	N/A
PHROG	UHGV-0020028_32	phrog_14030	167.5	0	N/A	unknown function
UniRef90	UHGV-0020028_32	UniRef90_A0A173XSJ1	196.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0020028_32	1121115.AXVN01000051_gene809	190.0	0	NLP P60 protein	N/A
Pfam	UHGV-0020028_32	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0020028_32	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0020028_32	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0020028_32	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0020028_33	phrog_1863	53.4	0.0000000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0020028_33	1226322.HMPREF1545_04027	73.2	4.75e-16	N/A	N/A
PHROG	UHGV-0020028_34	phrog_1129	66.9	2.2e-19	holin	lysis
UniRef90	UHGV-0020028_34	UniRef90_A0A6A8VHY5	125.0	1.2e-35	Enolase	N/A
eggNOG-mapper	UHGV-0020028_34	1226322.HMPREF1545_00069	129.0	3.08e-38	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0020028_34	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0020028_34	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020028_35	UniRef90_A0A8D9PDT6	53.5	0.0000000783	Transcriptional regulatory protein	N/A
Pfam	UHGV-0020028_35	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0020028_35	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0020028_35	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-0020028_38	UniRef90_A0A7M1RS47	56.2	0.000000607	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0020028_38	1408437.JNJN01000043_gene801	76.6	0.00000000000000503	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0020028	Yes	27,005	59	74	1