vOTU vOTU-170296

vOTU: vOTU-170296

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-170296
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vOTU-170296
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1424971
Biosample ID	SAMEA3664682
Genome length (bp)	32,999 bps
CheckV completeness	57.23% (Medium-quality)
CDS count	72
CDS density	88.98%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	601	Host agreement	97.84
PHIST-predicted host lineage	Bacteria → Bacteroidota → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 57.23)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1424971_1	phrog_23587	75.2	6.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-1424971_1	748224.HMPREF9436_00405	114.0	3.21e-26	domain, Protein	N/A
COG	UHGV-1424971_1	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1424971_2	phrog_9534	40.8	0.000000000022	head protein	head and packaging
eggNOG-mapper	UHGV-1424971_2	748224.HMPREF9436_01407	92.0	1.48e-19	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-1424971_2	COG4675	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1424971_4	NF040910	N/A	N/A	N/A	N/A
KOfam	UHGV-1424971_5	K07273	163.8	0	acm; lysozyme	N/A
PHROG	UHGV-1424971_5	phrog_291	113.8	1.6e-33	endolysin	lysis
UniRef90	UHGV-1424971_5	UniRef90_A0A564U0D3	424.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1424971_5	718252.FP2_04890	257.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1424971_5	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1424971_5	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1424971_5	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1424971_6	phrog_4105	103.1	1.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-1424971_6	657322.FPR_27220	139.0	1.18003e-41	N/A	N/A
PHROG	UHGV-1424971_7	phrog_15303	82.4	3.9e-24	N/A	unknown function
PHROG	UHGV-1424971_12	phrog_16490	100.6	2.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-1424971_12	1408437.JNJN01000043_gene803	158.0	1.68156e-44	N/A	N/A
eggNOG-mapper	UHGV-1424971_13	658655.HMPREF0988_00916	120.0	2.13e-33	N/A	N/A
eggNOG-mapper	UHGV-1424971_14	1408437.JNJN01000043_gene801	87.0	2.04e-18	N/A	N/A
PHROG	UHGV-1424971_15	phrog_130	143.0	1.90016e-42	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1424971_15	UniRef90_UPI001DACB905	159.0	2.94273e-44	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1424971_15	1121115.AXVN01000056_gene2483	164.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1424971_15	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1424971_15	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1424971_15	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1424971_16	phrog_3896	69.6	2.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-1424971_16	397290.C810_01338	67.8	0.0000000000000349	N/A	N/A
structural_annotation	UHGV-1424971_17	PF07878	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1424971_19	PF01396	N/A	N/A	N/A	N/A
KOfam	UHGV-1424971_20	K03496	237.1	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1424971_20	phrog_164	160.6	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424971_20	UniRef90_A0A1C6BS15	212.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-1424971_20	1408423.JHYA01000021_gene392	190.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1424971_20	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1424971_20	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1424971_20	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-1424971_22	phrog_4402	107.8	7.8e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424971_22	UniRef90_A0A0H5Q331	252.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1424971_22	999413.HMPREF1094_04438	142.0	1.33e-36	Initiator Replication protein	N/A
Pfam	UHGV-1424971_22	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1424971_22	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1424971_22	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1424971_22	PF01051,PF21205,NF010305,COG5527	N/A	N/A	N/A	N/A
UniRef90	UHGV-1424971_23	UniRef90_A0A2A7AM70	191.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1424971_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1424971_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1424971_23	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1424971_28	phrog_8	43.8	0.0000000000053	transcriptional regulator	transcription regulation
UniRef90	UHGV-1424971_28	UniRef90_UPI001D05D211	78.2	2.05e-16	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1424971_28	693746.OBV_43290	63.9	0.0000000000231	addiction module antidote protein HigA	N/A
COG	UHGV-1424971_28	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1424971_28	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1424971_29	UniRef90_UPI001956DCC9	72.0	0.00000000000000253	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1424971_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1424971_29	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1424971_30	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1424971_32	TIGR03826	N/A	N/A	N/A	N/A
Pfam	UHGV-1424971_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1424971_34	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1424971_35	PF14143	N/A	N/A	N/A	N/A
COG	UHGV-1424971_36	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1424971_36	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-1424971_38	phrog_99	119.8	1.9e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424971_38	UniRef90_A0A3G2N781	129.0	4.46e-35	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1424971_38	232237.Q7Y5F9_9CAUD	84.0	4.52e-18	HNH endonuclease	N/A
Pfam	UHGV-1424971_38	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-1424971_39	phrog_155	160.7	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424971_39	UniRef90_UPI00130EB09C	238.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1424971_39	748224.HMPREF9436_03360	222.0	0	ERF superfamily	N/A
Pfam	UHGV-1424971_39	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1424971_39	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1424971_40	K03111	117.4	1.9e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1424971_40	phrog_44	126.2	2.5e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424971_40	UniRef90_A0A6N7TNV3	155.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1424971_40	748224.HMPREF9436_03359	150.0	7.00649e-45	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1424971_40	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1424971_40	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1424971_40	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1424971_40	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1424971_40	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1424971_41	phrog_28936	123.1	1.7e-36	N/A	unknown function
eggNOG-mapper	UHGV-1424971_41	573061.Clocel_3563	129.0	7.31e-35	N/A	N/A
structural_annotation	UHGV-1424971_41	PF11645,MF_01490,NF040854	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1424971_42	657322.FPR_23130	139.0	3.51e-40	N/A	N/A
KOfam	UHGV-1424971_43	K00558	44.9	1.4e-18	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1424971_43	phrog_16427	134.5	1.29998e-41	DNA methyltransferase	other
UniRef90	UHGV-1424971_43	UniRef90_D4K5C7	454.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1424971_43	657322.FPR_26610	454.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
PADLOC	UHGV-1424971_43	oMTase_00004	64.8	1.2e-32	orphan methyltransferase	RM
Pfam	UHGV-1424971_43	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1424971_43	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1424971_44	phrog_59	126.0	8.1e-38	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424971_44	UniRef90_A0A8J7KX41	162.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1424971_44	213777.R9R2C9_9CAUD	112.0	1.05e-28	HNH endonuclease	N/A
PADLOC	UHGV-1424971_44	HEase_00016	103.0	1.8e-30	homing endonuclease	RM
Pfam	UHGV-1424971_44	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1424971_44	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1424971_44	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-1424971_46	phrog_35094	94.2	1.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-1424971_46	457424.BFAG_02409	119.0	2.68e-34	N/A	N/A
PHROG	UHGV-1424971_48	phrog_843	61.9	6.7e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424971_48	UniRef90_UPI001159D907	114.0	4.58e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1424971_48	929506.CbC4_1203	106.0	1.37e-26	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1424971_48	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-1424971_49	phrog_30930	81.3	1.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-1424971_49	1214184.ALKY01000039_gene933	79.7	8.12e-18	N/A	N/A
KOfam	UHGV-1424971_53	K00390	113.5	1.4e-33	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1424971_53	phrog_424	119.8	1.7e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1424971_53	UniRef90_A0A1Y4LU27	367.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-1424971_53	1408437.JNJN01000032_gene2312	318.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1424971_53	BrxP_00001	91.9	5e-27	BrxP	BREX
Pfam	UHGV-1424971_53	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1424971_53	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1424971_53	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1424971_55	718252.FP2_01040	62.0	0.0000000000277	N/A	N/A
PHROG	UHGV-1424971_56	phrog_1934	151.5	1.4013e-45	N/A	unknown function
UniRef90	UHGV-1424971_56	UniRef90_UPI001F1E6864	138.0	1.78e-39	N/A	N/A
eggNOG-mapper	UHGV-1424971_56	718252.FP2_01030	259.0	0	COG NOG19595 non supervised orthologous group	N/A
Pfam	UHGV-1424971_56	PF11672	N/A	N/A	zinc-finger-containing domain	DUF3268
structural_annotation	UHGV-1424971_56	PF11672	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1424971_57	PF16677	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1424971_62	PF15731,TIGR03831	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1424971_65	NF041588	N/A	N/A	N/A	N/A
Pfam	UHGV-1424971_68	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1424971_68	PF14354	N/A	N/A	N/A	N/A
PHROG	UHGV-1424971_69	phrog_15768	98.9	5.4e-29	N/A	unknown function
UniRef90	UHGV-1424971_69	UniRef90_A0A6N7WKT0	86.7	3.96e-17	N/A	N/A
eggNOG-mapper	UHGV-1424971_69	1189620.AJXL01000045_gene1040	83.2	3.63e-16	N/A	N/A
Pfam	UHGV-1424971_69	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1424971_69	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1424971_70	K02314	212.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1424971_70	phrog_19	216.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1424971_70	UniRef90_UPI001CBC4B63	424.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1424971_70	1203606.HMPREF1526_01325	161.0	3.00018e-42	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1424971_70	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1424971_70	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1424971_70	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1424971_71	phrog_9298	317.5	0	radical SAM domain protein	other
UniRef90	UHGV-1424971_71	UniRef90_A0A6L5TFB3	597.0	0	Radical SAM protein	N/A
eggNOG-mapper	UHGV-1424971_71	552396.HMPREF0863_02707	332.0	0	radical SAM domain protein	N/A
COG	UHGV-1424971_71	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1424971_71	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A
PHROG	UHGV-1424971_72	phrog_1709	59.4	5.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-1424971_72	1280686.AUKE01000002_gene1328	80.5	1.44e-18	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1424971	Yes	32,999	48	57	1