vOTU vOTU-170396

vOTU: vOTU-170396

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-170396
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus paracasei
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01575 → vOTU-170396
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus rhamnosus
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0112006
Biosample ID	N/A
Genome length (bp)	29,487 bps
CheckV completeness	84.09% (Medium-quality)
CDS count	44
CDS density	93.25%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus rhamnosus	Total connections	50	Host agreement	78
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus paracasei	Total connections	39	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 84.09)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0112006_1	phrog_1330	113.6	1.3e-33	tail protein	tail
UniRef90	UHGV-0112006_1	UniRef90_C2KJ85	260.0	0	Phage minor structural protein, N-terminal domain protein (Fragment)	N/A
eggNOG-mapper	UHGV-0112006_1	1027396.LMOSA_21510	75.5	0.0000000000155	Prophage endopeptidase tail	N/A
COG	UHGV-0112006_1	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0112006_2	phrog_33	58.2	2.3e-16	distal tail protein Dit	tail
UniRef90	UHGV-0112006_2	UniRef90_A0A181ZKN1	107.0	1.3e-24	Siphovirus-type tail component	N/A
eggNOG-mapper	UHGV-0112006_2	272623.L63101	85.1	4.37e-17	phage tail	N/A
COG	UHGV-0112006_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0112006_2	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_3	phrog_5755	270.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0112006_3	UniRef90_A0A0C9Q9F8	1116.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0112006_3	543734.LCABL_09940	447.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0112006_3	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0112006_3	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0112006_3	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0112006_3	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_4	phrog_3033	48.3	0.00000000000017	N/A	unknown function
PHROG	UHGV-0112006_5	phrog_709	108.7	4.1e-32	N/A	unknown function
eggNOG-mapper	UHGV-0112006_5	1329250.WOSG25_220070	79.7	1.49e-17	N/A	N/A
structural_annotation	UHGV-0112006_5	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_6	phrog_88	166.7	0	major tail protein	tail
UniRef90	UHGV-0112006_6	UniRef90_A0A7M1BYU7	407.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0112006_6	198094.BA_0474	178.0	0	phage tail protein	N/A
NCBIFam	UHGV-0112006_6	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0112006_6	PF06488,TIGR01603,COG3157	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0112006_7	397288.C806_00805	56.6	0.00000000853	N/A	N/A
structural_annotation	UHGV-0112006_7	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_8	phrog_5	45.0	0.000000000003	tail completion or Neck1 protein	connector
UniRef90	UHGV-0112006_8	UniRef90_UPI00040399DB	108.0	5.39e-28	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0112006_8	1121871.AUAT01000030_gene1030	108.0	9.05e-29	N/A	N/A
Pfam	UHGV-0112006_8	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0112006_8	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_9	phrog_1951	96.1	2.1e-28	head-tail adaptor	connector
UniRef90	UHGV-0112006_9	UniRef90_UPI0015CDCCCE	102.0	5.29e-26	phage head closure protein	N/A
eggNOG-mapper	UHGV-0112006_9	1232453.BAIF02000028_gene2726	73.2	0.00000000000000306	N/A	N/A
NCBIFam	UHGV-0112006_9	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
PHROG	UHGV-0112006_10	phrog_2550	98.5	2.8e-29	N/A	unknown function
UniRef90	UHGV-0112006_10	UniRef90_UPI0010F5CFB7	102.0	2.49e-26	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0112006_10	1497679.EP56_05740	84.7	3.14e-20	N/A	N/A
structural_annotation	UHGV-0112006_10	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_11	phrog_10	151.0	8.40779e-45	major head protein	head and packaging
UniRef90	UHGV-0112006_11	UniRef90_A0A7M1BZC8	765.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0112006_11	386043.lwe1225	214.0	0	Phage capsid family	N/A
Pfam	UHGV-0112006_11	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0112006_11	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0112006_11	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0112006_11	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0112006_12	K06904	118.7	6.9e-35	N/A	N/A
PHROG	UHGV-0112006_12	phrog_80	143.1	2.49992e-42	head maturation protease	head and packaging
UniRef90	UHGV-0112006_12	UniRef90_A0A7M1BYT3	386.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0112006_12	1121871.AUAT01000030_gene1025	159.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0112006_12	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0112006_12	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0112006_12	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0112006_12	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_13	phrog_12	158.1	0	portal protein	head and packaging
UniRef90	UHGV-0112006_13	UniRef90_A0A0R2B0Z5	502.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0112006_13	1123314.AUIO01000016_gene838	399.0	0	Phage portal protein	N/A
Pfam	UHGV-0112006_13	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0112006_13	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0112006_13	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0112006_13	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_14	phrog_9	292.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0112006_14	UniRef90_UPI0015C6EED4	813.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0112006_14	1145276.T479_19990	764.0	0	Terminase	N/A
Pfam	UHGV-0112006_14	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0112006_14	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0112006_14	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0112006_14	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_15	phrog_361	106.3	2.3e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0112006_15	UniRef90_UPI0015CDD673	125.0	1.11e-34	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0112006_15	1145276.T479_19995	118.0	7.32e-33	Phage terminase, small subunit	N/A
Pfam	UHGV-0112006_15	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0112006_15	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-0112006_16	phrog_119	68.9	7.5e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112006_16	UniRef90_A0A7M1C6J5	196.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0112006_16	1497679.EP56_05700	109.0	1.16e-29	HNH nucleases	N/A
COG	UHGV-0112006_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0112006_17	phrog_36	61.2	2.3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0112006_17	UniRef90_K0N3N9	270.0	0	Phage transcriptional regulator, RinA family	N/A
eggNOG-mapper	UHGV-0112006_17	543734.LCABL_11050	270.0	0	Transcriptional regulator, RinA family	N/A
NCBIFam	UHGV-0112006_17	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0112006_17	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_18	phrog_17171	205.6	0	N/A	unknown function
PHROG	UHGV-0112006_19	phrog_1891	162.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112006_19	UniRef90_UPI000FF39836	351.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0112006_19	543734.LCABL_11030	385.0	0	HNH endonuclease	N/A
Pfam	UHGV-0112006_19	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0112006_19	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_20	phrog_13069	257.6	0	N/A	unknown function
PHROG	UHGV-0112006_21	phrog_2044	114.3	3.8e-34	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112006_21	UniRef90_K0N9N6	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0112006_21	543734.LCABL_11010	176.0	0	N/A	N/A
PHROG	UHGV-0112006_22	phrog_5702	90.7	6.1e-27	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112006_22	UniRef90_K0N3N5	213.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0112006_22	543734.LCABL_11000	213.0	0	VRR_NUC	N/A
Pfam	UHGV-0112006_22	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0112006_22	PF01870,MF_00130,NF002581,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_23	phrog_1313	442.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112006_23	UniRef90_A0A7M1C4G7	780.0	0	Helicase	N/A
eggNOG-mapper	UHGV-0112006_23	543734.LCABL_10990	798.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0112006_23	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0112006_23	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0112006_23	PF05272,MF_04000,NF011296,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_24	phrog_695	197.3	0	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112006_24	UniRef90_A0A806E228	531.0	0	N/A	N/A
eggNOG-mapper	UHGV-0112006_24	543734.LCABL_10980	531.0	0	Bifunctional DNA primase/polymerase, N-terminal	N/A
Pfam	UHGV-0112006_24	PF09250	N/A	N/A	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
Pfam	UHGV-0112006_24	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
COG	UHGV-0112006_24	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0112006_24	PF09250,PF08708,NF040561,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_25	phrog_378	76.9	3.3e-22	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112006_25	UniRef90_UPI001F401961	204.0	0	N/A	N/A
eggNOG-mapper	UHGV-0112006_25	543734.LCABL_10970	341.0	0	N/A	N/A
PHROG	UHGV-0112006_26	phrog_124	145.6	3.50325e-43	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112006_26	UniRef90_A0A806EA38	470.0	0	Phage NTP-binding protein	N/A
eggNOG-mapper	UHGV-0112006_26	543734.LCABL_10960	470.0	0	AAA domain	N/A
Pfam	UHGV-0112006_26	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0112006_26	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0112006_26	PF13479,MF_00348,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0112006_27	K19789	294.5	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0112006_27	phrog_16	245.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112006_27	UniRef90_A0A7M1BYQ6	884.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0112006_27	543734.LCABL_10950	904.0	0	Helicase C-terminal domain protein	N/A
PADLOC	UHGV-0112006_27	mREase_IV_00005	86.6	1.8e-26	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0112006_27	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0112006_27	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0112006_27	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0112006_27	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_28	phrog_5118	97.7	4.6e-29	N/A	unknown function
PHROG	UHGV-0112006_29	phrog_253	154.9	0	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112006_29	UniRef90_UPI000F7858DB	152.0	2.38221e-44	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0112006_29	543734.LCABL_10930	310.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-0112006_29	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0112006_29	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_30	phrog_17254	171.2	0	N/A	unknown function
PHROG	UHGV-0112006_31	phrog_5144	105.9	1.4e-31	N/A	unknown function
UniRef90	UHGV-0112006_31	UniRef90_A0A0P0I353	60.1	0.000000000089	Transposase	N/A
PHROG	UHGV-0112006_32	phrog_1090	87.4	1.2e-25	N/A	unknown function
UniRef90	UHGV-0112006_32	UniRef90_UPI001F4D796E	129.0	3.64e-37	SinR family protein	N/A
eggNOG-mapper	UHGV-0112006_32	797515.HMPREF9103_02406	108.0	4.98e-30	N/A	N/A
PHROG	UHGV-0112006_33	phrog_3882	52.1	0.0000000000000077	N/A	unknown function
PHROG	UHGV-0112006_34	phrog_7103	81.8	4.3e-24	N/A	unknown function
PHROG	UHGV-0112006_35	phrog_823	68.1	1.2e-19	N/A	unknown function
UniRef90	UHGV-0112006_35	UniRef90_UPI00194DBC78	107.0	3.42e-28	N/A	N/A
eggNOG-mapper	UHGV-0112006_35	543734.LCABL_10870	224.0	0	N/A	N/A
Pfam	UHGV-0112006_35	PF05595	N/A	N/A	N/A	DUF771
KOfam	UHGV-0112006_36	K07741	122.4	8.9e-36	antB; anti-repressor protein	N/A
PHROG	UHGV-0112006_36	phrog_373	136.1	2.9e-40	anti-repressor	transcription regulation
UniRef90	UHGV-0112006_36	UniRef90_UPI0015FDE378	434.0	0	antA/AntB antirepressor family protein	N/A
eggNOG-mapper	UHGV-0112006_36	1423732.BALS01000058_gene2817	338.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0112006_36	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-0112006_36	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0112006_36	PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-0112006_37	UniRef90_UPI00077C7E61	95.9	1.2e-24	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0112006_37	908339.HMPREF9265_1642	83.2	1.81e-20	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0112006_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0112006_37	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_38	phrog_8	74.2	2.5e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0112006_38	UniRef90_A0A422MCR1	227.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0112006_38	908339.HMPREF9265_1643	90.1	7.06e-22	Transcriptional regulator, Cro CI family	N/A
COG	UHGV-0112006_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0112006_38	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_39	phrog_19315	196.0	0	N/A	unknown function
UniRef90	UHGV-0112006_39	UniRef90_A0A422MCR9	801.0	0	Double zinc ribbon	N/A
eggNOG-mapper	UHGV-0112006_39	1329250.WOSG25_021900	139.0	2.73e-34	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0112006_39	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
Pfam	UHGV-0112006_39	PF12773	N/A	N/A	Double zinc ribbon	DZR
Pfam	UHGV-0112006_39	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
COG	UHGV-0112006_39	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0112006_39	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0112006_41	phrog_27728	47.3	0.00000000000032	N/A	unknown function
UniRef90	UHGV-0112006_41	UniRef90_A0A5B7SWF6	94.0	4.14e-22	FlgT_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0112006_41	349123.Lreu23DRAFT_3908	79.7	2.1e-17	N/A	N/A
Pfam	UHGV-0112006_41	PF16538	N/A	N/A	Flagellar assembly protein T, C-terminal domain	FlgT_C
structural_annotation	UHGV-0112006_41	PF16538	N/A	N/A	N/A	N/A
KOfam	UHGV-0112006_44	K14059	226.3	0	int; integrase	N/A
PHROG	UHGV-0112006_44	phrog_1	221.2	0	integrase	integration and excision
UniRef90	UHGV-0112006_44	UniRef90_U5U6W4	743.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0112006_44	543734.LCABL_10790	744.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0112006_44	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0112006_44	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0112006_44	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0112006_44	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0112006_44	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0112006	Yes	29,487	45	84	1