vOTU vOTU-170628

vOTU: vOTU-170628

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-170628
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00027 → vGENUS-00912 → vOTU-170628
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0027183
Biosample ID	N/A
Genome length (bp)	34,715 bps
CheckV completeness	86.73% (Medium-quality)
CDS count	42
CDS density	91.22%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705	Total connections	83	Host agreement	72.29
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp900314705	Total connections	137	Host agreement	99.27

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 86.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0027183_1	K06334	129.9	1.7e-38	cotJC; spore coat protein JC	N/A
PHROG	UHGV-0027183_1	phrog_7573	96.3	3.4e-28	N/A	unknown function
UniRef90	UHGV-0027183_1	UniRef90_R6N5R6	150.0	9.80909e-45	Mn-containing catalase	N/A
eggNOG-mapper	UHGV-0027183_1	1105031.HMPREF1141_2503	144.0	9.48679e-43	PFAM Manganese containing catalase	N/A
Pfam	UHGV-0027183_1	PF05067	N/A	N/A	Manganese containing catalase	Mn_catalase
COG	UHGV-0027183_1	COG3546	N/A	N/A	Mn-containing catalase (includes spore coat protein CotJC)	N/A
KOfam	UHGV-0027183_2	K06400	356.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0027183_2	phrog_95	351.2	0	integrase	integration and excision
UniRef90	UHGV-0027183_2	UniRef90_A0A354HPL0	923.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0027183_2	537013.CLOSTMETH_01697	452.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0027183_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0027183_2	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0027183_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0027183_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0027183_2	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027183_3	UniRef90_A0A348ZC97	366.0	0	UDP-N-acetylglucosamine kinase	N/A
eggNOG-mapper	UHGV-0027183_3	246199.CUS_4649	196.0	0	zeta toxin	N/A
Pfam	UHGV-0027183_3	PF06414	N/A	N/A	Zeta toxin	Zeta_toxin
COG	UHGV-0027183_3	COG4185	N/A	N/A	Predicted ABC-type ATPase or kinase	N/A
structural_annotation	UHGV-0027183_3	PF06414,MF_00234,NF041574,COG4185	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_4	phrog_87	44.6	0.0000000000012	metallo-protease	other
UniRef90	UHGV-0027183_4	UniRef90_A0A3D1HDV6	180.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0027183_4	428125.CLOLEP_01867	117.0	7.51e-30	N/A	N/A
Pfam	UHGV-0027183_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0027183_4	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0027183_5	K22300	69.3	7.7e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0027183_5	phrog_8	56.6	5.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0027183_5	UniRef90_UPI001D064B9F	108.0	1.11e-27	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0027183_5	246199.CUS_5911	99.0	1.31e-23	N/A	N/A
Pfam	UHGV-0027183_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0027183_5	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0027183_5	PF12844,MF_02017,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027183_6	UniRef90_A0A173SW70	62.4	0.0000000000132	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-0027183_6	1120998.AUFC01000030_gene2205	59.3	0.0000000000376	Helix-turn-helix	N/A
Pfam	UHGV-0027183_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0027183_6	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0027183_7	K07741	102.9	7e-30	antB; anti-repressor protein	N/A
PHROG	UHGV-0027183_7	phrog_130	275.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0027183_7	UniRef90_UPI001B3C6365	475.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0027183_7	1392501.JIAC01000001_gene1517	350.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0027183_7	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0027183_7	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0027183_7	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0027183_7	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
KOfam	UHGV-0027183_11	K03546	59.7	3.2e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0027183_11	phrog_1499	474.5	0	N/A	unknown function
UniRef90	UHGV-0027183_11	UniRef90_UPI001B3C9718	730.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0027183_11	645991.Sgly_0320	525.0	0	domain protein	N/A
Pfam	UHGV-0027183_11	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0027183_11	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0027183_11	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_13	phrog_124	223.0	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027183_13	UniRef90_UPI001B3C5FE5	696.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0027183_13	394503.Ccel_3309	366.0	0	AAA domain	N/A
Pfam	UHGV-0027183_13	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0027183_13	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_14	phrog_2698	199.1	0	N/A	unknown function
UniRef90	UHGV-0027183_14	UniRef90_UPI001B3C89FE	305.0	0	N/A	N/A
eggNOG-mapper	UHGV-0027183_14	608534.GCWU000341_02311	145.0	2.18042e-42	N/A	N/A
structural_annotation	UHGV-0027183_14	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-0027183_15	K17677	360.8	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0027183_15	phrog_16	290.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027183_15	UniRef90_UPI001B3C4DBD	1045.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0027183_15	1235798.C817_03499	832.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0027183_15	mREase_IV_00005	135.0	6.6e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0027183_15	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0027183_15	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0027183_15	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0027183_15	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0027183_16	K07505	402.6	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0027183_16	phrog_2597	1170.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027183_16	UniRef90_UPI001B3C4CA9	1028.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0027183_16	394503.Ccel_3304	948.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0027183_16	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0027183_16	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0027183_16	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0027183_16	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0027183_17	K01160	46.2	0.0000000000011	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0027183_17	phrog_140	100.3	2e-29	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027183_17	UniRef90_UPI001B3C90F3	294.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0027183_17	478749.BRYFOR_07588	194.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0027183_17	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0027183_17	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0027183_17	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027183_18	PF15591,MF_00667,NF000331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027183_19	PF09889	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027183_20	PF04012	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_21	phrog_36	56.4	5.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0027183_21	UniRef90_A0A415TAG9	114.0	4.19e-30	N/A	N/A
eggNOG-mapper	UHGV-0027183_21	411459.RUMOBE_01043	58.2	0.00000000923	N/A	N/A
structural_annotation	UHGV-0027183_21	PF07374,MF_00674,NF005248,COG2739	N/A	N/A	N/A	N/A
Pfam	UHGV-0027183_22	PF20505	N/A	N/A	N/A	DUF6731
structural_annotation	UHGV-0027183_22	PF20505	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027183_23	PF15968	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_24	phrog_309	131.4	2.4e-39	terminase small subunit	head and packaging
UniRef90	UHGV-0027183_24	UniRef90_UPI001B3C9B19	239.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0027183_24	374526.A5GYP7_9CAUD	132.0	8.12e-38	endonuclease activity	N/A
structural_annotation	UHGV-0027183_24	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0027183_25	K06909	82.0	7.6e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0027183_25	phrog_2	80.3	3.9e-23	terminase large subunit	head and packaging
UniRef90	UHGV-0027183_25	UniRef90_UPI001B3C8BA8	843.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0027183_25	1304866.K413DRAFT_3034	600.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0027183_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0027183_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0027183_25	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_26	phrog_533	297.9	0	portal protein	head and packaging
UniRef90	UHGV-0027183_26	UniRef90_UPI001B3C997D	872.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0027183_26	1304866.K413DRAFT_3035	453.0	0	N/A	N/A
structural_annotation	UHGV-0027183_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_27	phrog_581	320.6	0	minor head protein	head and packaging
UniRef90	UHGV-0027183_27	UniRef90_UPI001B3C97A7	818.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0027183_27	742765.HMPREF9457_02121	370.0	0	N/A	N/A
Pfam	UHGV-0027183_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0027183_27	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
COG	UHGV-0027183_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027183_27	PF06152,PF04002	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_28	phrog_3675	108.9	2.2e-32	N/A	unknown function
UniRef90	UHGV-0027183_28	UniRef90_UPI001C02868E	129.0	5.67e-37	YjcQ family protein	N/A
eggNOG-mapper	UHGV-0027183_28	1235799.C818_04221	129.0	1.81e-37	YjcQ protein	N/A
Pfam	UHGV-0027183_28	PF09639	N/A	N/A	YjcQ protein	YjcQ
structural_annotation	UHGV-0027183_28	PF09639,TIGR04176,COG2345	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_29	phrog_194	106.3	3.4e-31	head scaffolding protein	head and packaging
UniRef90	UHGV-0027183_29	UniRef90_UPI001B3C6D0D	314.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0027183_29	999413.HMPREF1094_00216	133.0	3.93e-37	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0027183_29	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0027183_29	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_30	phrog_422	235.3	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0027183_30	693746.OBV_18090	345.0	0	N/A	N/A
structural_annotation	UHGV-0027183_30	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_31	phrog_541	91.3	8.3e-27	head-tail adaptor	connector
UniRef90	UHGV-0027183_31	UniRef90_A0A371AQT0	99.8	1.03e-24	N/A	N/A
eggNOG-mapper	UHGV-0027183_31	1449050.JNLE01000003_gene3888	103.0	7.08e-27	N/A	N/A
PHROG	UHGV-0027183_32	phrog_3366	73.0	1.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0027183_32	1449050.JNLE01000003_gene3887	86.3	1.05e-19	N/A	N/A
Pfam	UHGV-0027183_32	PF20536	N/A	N/A	N/A	DUF6751
PHROG	UHGV-0027183_33	phrog_556	117.7	4.7e-35	minor head protein	head and packaging
UniRef90	UHGV-0027183_33	UniRef90_UPI001B3C5A2B	325.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0027183_33	1449050.JNLE01000003_gene3886	139.0	5.64e-40	N/A	N/A
Pfam	UHGV-0027183_33	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0027183_33	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_34	phrog_3266	97.2	1.3e-28	tail completion	connector
eggNOG-mapper	UHGV-0027183_34	1449050.JNLE01000003_gene3885	147.0	1.62551e-43	N/A	N/A
structural_annotation	UHGV-0027183_34	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_35	phrog_3099	117.4	1.1e-34	N/A	unknown function
eggNOG-mapper	UHGV-0027183_35	1160721.RBI_II00532	187.0	0	N/A	N/A
structural_annotation	UHGV-0027183_35	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_36	phrog_11299	126.8	1.3e-37	N/A	unknown function
eggNOG-mapper	UHGV-0027183_36	1449050.JNLE01000003_gene3883	96.7	1.06e-23	N/A	N/A
structural_annotation	UHGV-0027183_36	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_37	phrog_706	139.6	1.90002e-41	N/A	unknown function
UniRef90	UHGV-0027183_37	UniRef90_UPI001B3C82AE	366.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0027183_37	1160721.RBI_II00530	204.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0027183_37	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0027183_37	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_38	phrog_9700	160.5	0	N/A	unknown function
UniRef90	UHGV-0027183_38	UniRef90_UPI001B3C6D17	294.0	0	leucine-rich repeat protein	N/A
eggNOG-mapper	UHGV-0027183_38	476272.RUMHYD_01979	152.0	6.84002e-41	N/A	N/A
Pfam	UHGV-0027183_38	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0027183_38	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
PHROG	UHGV-0027183_39	phrog_1535	223.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0027183_39	411902.CLOBOL_00126	122.0	2.16e-25	N/A	N/A
COG	UHGV-0027183_39	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0027183_40	phrog_1194	42.5	0.000000000009	N/A	unknown function
eggNOG-mapper	UHGV-0027183_40	1235790.C805_00088	85.1	4.19e-19	N/A	N/A
Pfam	UHGV-0027183_40	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0027183_40	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0027183_41	phrog_18190	46.6	5.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-0027183_41	742733.HMPREF9469_01807	66.6	0.00000000819	N/A	N/A
structural_annotation	UHGV-0027183_41	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0027183	Yes	34,715	34	87	1