vOTU vOTU-170673

vOTU: vOTU-170673

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-170673
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Bacteroidota → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes putredinis
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00005 → vGENUS-00161 → vOTU-170673
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1470294
Biosample ID	SAMEA3449300
Genome length (bp)	30,888 bps
CheckV completeness	74.36% (Medium-quality)
CDS count	60
CDS density	89.24%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	91	Host agreement	87.91
PHIST-predicted host lineage	Bacteria → Bacteroidota → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes putredinis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 74.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1470294_3	phrog_581	285.8	0	minor head protein	head and packaging
UniRef90	UHGV-1470294_3	UniRef90_UPI001D080D49	555.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1470294_3	1226322.HMPREF1545_00046	374.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1470294_3	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1470294_3	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1470294_3	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1470294_4	phrog_533	395.4	0	portal protein	head and packaging
UniRef90	UHGV-1470294_4	UniRef90_A0A1C5N775	585.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1470294_4	1226322.HMPREF1545_00044	552.0	0	N/A	N/A
Pfam	UHGV-1470294_4	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1470294_4	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1470294_5	K06909	114.9	9e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1470294_5	phrog_2	116.2	4.6e-34	terminase large subunit	head and packaging
UniRef90	UHGV-1470294_5	UniRef90_A0A3D3Y0N9	414.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1470294_5	1226322.HMPREF1545_00043	392.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1470294_5	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1470294_5	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1470294_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1470294_5	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1470294_8	K07319	123.4	2.1e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1470294_8	phrog_498	434.8	0	DNA methyltransferase	other
UniRef90	UHGV-1470294_8	UniRef90_A0A810Q3Z7	439.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-1470294_8	1423758.BN55_01455	417.0	0	DNA methylase	N/A
PADLOC	UHGV-1470294_8	MTase_II_00015	239.5	0	Type II methyltransferase	RM
Pfam	UHGV-1470294_8	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1470294_8	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1470294_8	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1470294_8	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1470294_9	phrog_872	149.2	0	N/A	unknown function
UniRef90	UHGV-1470294_9	UniRef90_A0A8J6M9F5	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-1470294_9	1519439.JPJG01000060_gene1880	182.0	0	N/A	N/A
Pfam	UHGV-1470294_9	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1470294_9	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1470294_9	PF11195	N/A	N/A	N/A	N/A
KOfam	UHGV-1470294_10	K22299	42.0	0.000000000018	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-1470294_10	UniRef90_A0A1C6J963	107.0	7.05e-29	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-1470294_10	1226322.HMPREF1545_00039	70.5	0.00000000000000361	sequence-specific DNA binding	N/A
Pfam	UHGV-1470294_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1470294_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1470294_11	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
KOfam	UHGV-1470294_12	K02647	56.3	4.4e-16	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-1470294_12	UniRef90_UPI00164DE10C	60.1	0.000000000139	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1470294_12	1301100.HG529387_gene5110	60.1	0.000000000847	Putative sugar diacid recognition	N/A
Pfam	UHGV-1470294_12	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-1470294_12	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-1470294_12	PF13556,TIGR00637,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-1470294_15	phrog_22543	40.6	0.0000000000072	N/A	unknown function
UniRef90	UHGV-1470294_15	UniRef90_A0A8D9PDT5	62.4	0.000000000193	Hydrogenase/urease nickel incorporation protein	N/A
KOfam	UHGV-1470294_19	K07486	171.3	0	K07486; transposase	N/A
PHROG	UHGV-1470294_19	phrog_2199	217.8	0	transposase	integration and excision
UniRef90	UHGV-1470294_19	UniRef90_A0A0W7TUX4	783.0	0	Transposase	N/A
eggNOG-mapper	UHGV-1470294_19	1121334.KB911084_gene487	533.0	0	Transposase	N/A
Pfam	UHGV-1470294_19	PF01548	N/A	N/A	Transposase	DEDD_Tnp_IS110
Pfam	UHGV-1470294_19	PF02371	N/A	N/A	Transposase IS116/IS110/IS902 family	Transposase_20
NCBIFam	UHGV-1470294_19	NF033542.1	N/A	N/A	IS110 family transposase	N/A
COG	UHGV-1470294_19	COG3547	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-1470294_19	PF02371,NF033542,COG3547	N/A	N/A	N/A	N/A
PHROG	UHGV-1470294_20	phrog_757	85.8	4.1e-25	DNA methyltransferase	other
UniRef90	UHGV-1470294_20	UniRef90_A0A8D9PDD1	301.0	0	DNA (Cytosine 5) methyltransferase	N/A
eggNOG-mapper	UHGV-1470294_20	411473.RUMCAL_00286	278.0	0	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-1470294_20	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1470294_20	PF00145	N/A	N/A	N/A	N/A
PHROG	UHGV-1470294_21	phrog_37344	48.3	0.00000000000021	N/A	unknown function
KOfam	UHGV-1470294_22	K01160	43.3	0.000000000009	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1470294_22	phrog_4632	66.1	4.2e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1470294_22	UniRef90_A0A7X8IB41	117.0	1.24e-31	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1470294_22	469604.HMPREF0946_00819	63.5	0.0000000000285	N/A	N/A
structural_annotation	UHGV-1470294_22	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1470294_23	K00571	99.4	4.7e-29	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1470294_23	phrog_23224	98.9	5.1e-31	DNA methyltransferase	other
UniRef90	UHGV-1470294_23	UniRef90_A0A4D7AXZ9	309.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1470294_23	97139.C824_00741	251.0	0	DNA methylase	N/A
PADLOC	UHGV-1470294_23	MTase_II_00172	119.3	4.3e-35	Type II methyltransferase	RM
Pfam	UHGV-1470294_23	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1470294_23	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1470294_23	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1470294_25	PF21485	N/A	N/A	N/A	N/A
PHROG	UHGV-1470294_27	phrog_2149	67.0	3.4e-19	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1470294_27	UniRef90_A0A417QFV0	104.0	1.67e-23	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1470294_27	742740.HMPREF9474_03117	180.0	0	N/A	N/A
structural_annotation	UHGV-1470294_27	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-1470294_28	K03111	153.8	1.4013e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1470294_28	phrog_44	152.9	1.4013e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1470294_28	UniRef90_A0A1C5QDM6	211.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1470294_28	1226322.HMPREF1545_04080	210.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1470294_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1470294_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1470294_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1470294_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1470294_28	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1470294_29	phrog_7370	62.7	5e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1470294_29	UniRef90_UPI001C122365	136.0	1.53e-39	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1470294_29	1227453.C444_10654	52.0	0.000000642	COG1403 Restriction endonuclease	N/A
Pfam	UHGV-1470294_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1470294_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1470294_30	phrog_72	68.0	1.3e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1470294_30	UniRef90_A0A8D9PDS2	166.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1470294_30	445972.ANACOL_01825	146.0	2.42004e-42	N/A	N/A
structural_annotation	UHGV-1470294_30	PF05772	N/A	N/A	N/A	N/A
UniRef90	UHGV-1470294_31	UniRef90_B0PAM4	166.0	0	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-1470294_31	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-1470294_32	UniRef90_A0A845QLQ8	184.0	0	N/A	N/A
eggNOG-mapper	UHGV-1470294_32	1238184.CM001792_gene2550	98.2	1.68e-22	N/A	N/A
Pfam	UHGV-1470294_32	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1470294_32	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-1470294_33	phrog_4973	50.1	0.000000000000041	N/A	unknown function
UniRef90	UHGV-1470294_33	UniRef90_A0A3D3Y5F2	66.2	0.000000000000952	DNA-binding protein	N/A
Pfam	UHGV-1470294_33	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1470294_33	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1470294_35	PF14354,TIGR03655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1470294_38	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1470294_39	UniRef90_A0A810QCI5	67.4	0.000000000000181	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1470294_39	1514668.JOOA01000002_gene1643	50.4	0.00000211	N/A	N/A
Pfam	UHGV-1470294_39	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1470294_39	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1470294_39	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1470294_40	NF007257,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1470294_42	883114.HMPREF9709_01223	96.3	2.13e-22	N/A	N/A
structural_annotation	UHGV-1470294_42	PF05354,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1470294_46	PF12688	N/A	N/A	N/A	N/A
Pfam	UHGV-1470294_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1470294_47	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1470294_47	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1470294_48	K14059	197.6	0	int; integrase	N/A
PHROG	UHGV-1470294_48	phrog_1	189.0	0	integrase	integration and excision
UniRef90	UHGV-1470294_48	UniRef90_UPI001EDE32BF	514.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1470294_48	1226322.HMPREF1545_00144	313.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1470294_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1470294_48	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1470294_48	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1470294_49	1232443.BAIA02000078_gene6	56.6	0.00000000775	N/A	N/A
structural_annotation	UHGV-1470294_50	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1470294_51	phrog_20016	172.8	0	N/A	unknown function
UniRef90	UHGV-1470294_51	UniRef90_A0A2Z4QB67	160.0	0	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-1470294_51	1226322.HMPREF1545_00077	150.0	5.60519e-45	N/A	N/A
structural_annotation	UHGV-1470294_51	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1470294_52	phrog_16490	128.1	1.3e-38	N/A	unknown function
eggNOG-mapper	UHGV-1470294_52	1408437.JNJN01000043_gene803	142.0	3.08e-39	N/A	N/A
PHROG	UHGV-1470294_53	phrog_22984	92.1	4e-27	N/A	unknown function
PHROG	UHGV-1470294_54	phrog_21718	100.0	2.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-1470294_54	397290.C810_05210	70.5	0.000000000000367	N/A	N/A
PHROG	UHGV-1470294_55	phrog_3754	109.8	1.9e-32	N/A	unknown function
eggNOG-mapper	UHGV-1470294_55	1226322.HMPREF1545_00073	164.0	0	N/A	N/A
KOfam	UHGV-1470294_56	K08640	89.3	7.7e-26	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1470294_56	phrog_18955	152.7	1.4013e-45	N/A	unknown function
UniRef90	UHGV-1470294_56	UniRef90_UPI001C035E39	589.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-1470294_56	1235797.C816_04171	335.0	0	Peptidase M15	N/A
Pfam	UHGV-1470294_56	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-1470294_56	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1470294_56	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1470294_56	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-1470294_57	phrog_199	93.9	1.6e-27	holin	lysis
UniRef90	UHGV-1470294_57	UniRef90_K1UL76	287.0	0	Holin, toxin secretion/phage lysis	N/A
eggNOG-mapper	UHGV-1470294_57	411467.BACCAP_00280	139.0	4.37001e-40	Bacteriophage holin family	N/A
Pfam	UHGV-1470294_57	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1470294_57	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1470294_57	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1470294_57	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1470294_59	phrog_3904	76.7	1.3e-22	tail fiber protein	tail
eggNOG-mapper	UHGV-1470294_59	1519439.JPJG01000060_gene1892	61.6	0.000000209	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1470294_59	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1470294_59	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-1470294_60	phrog_32744	71.0	1.3e-20	N/A	unknown function

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1470294	Yes	30,888	53	74	1