vOTU vOTU-170807

vOTU: vOTU-170807

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-170807
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00886 → vGENUS-00783 → vOTU-170807
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0114590
Biosample ID	SAMEA103958149
Genome length (bp)	26,157 bps
CheckV completeness	72.40% (Medium-quality)
CDS count	40
CDS density	92.48%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	100	Host agreement	98
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci	Total connections	77	Host agreement	88.31

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 72.4)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-0114590_1	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0114590_3	phrog_24103	76.0	3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0114590_3	1118055.CAGU01000013_gene761	80.9	3.09e-16	N/A	N/A
PHROG	UHGV-0114590_5	phrog_15594	73.0	3.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0114590_5	862969.SCI_1223	75.1	2.93e-16	N/A	N/A
structural_annotation	UHGV-0114590_5	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_7	phrog_8781	51.1	0.000000000000026	endolysin	lysis
UniRef90	UHGV-0114590_7	UniRef90_A0A3A6D9Z4	117.0	1.39e-29	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-0114590_7	1235796.C815_01769	102.0	1.03e-24	hydrolase, family 25	N/A
COG	UHGV-0114590_7	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0114590_7	PF05382,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_8	phrog_1067	325.0	0	minor head protein	head and packaging
UniRef90	UHGV-0114590_8	UniRef90_UPI001D158A25	1241.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0114590_8	1232446.BAIE02000002_gene836	497.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0114590_8	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0114590_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0114590_8	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0114590_8	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_9	phrog_33	62.6	9.5e-18	distal tail protein Dit	tail
UniRef90	UHGV-0114590_9	UniRef90_A0A3E3E586	220.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0114590_9	1232446.BAIE02000002_gene835	204.0	0	phage tail	N/A
COG	UHGV-0114590_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0114590_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0114590_10	K10421	41.1	0.000000000012	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0114590_10	phrog_23464	206.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0114590_10	1232446.BAIE02000002_gene834	259.0	0	tape measure	N/A
COG	UHGV-0114590_10	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0114590_10	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_13	phrog_88	68.8	8.2e-20	major tail protein	tail
UniRef90	UHGV-0114590_13	UniRef90_A0A3E3ACS6	178.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0114590_13	33035.JPJF01000039_gene278	107.0	3.03e-26	N/A	N/A
NCBIFam	UHGV-0114590_13	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0114590_13	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0114590_14	UniRef90_R6UNR2	113.0	4.24e-29	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0114590_14	908340.HMPREF9406_2573	113.0	7.11e-30	N/A	N/A
structural_annotation	UHGV-0114590_14	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0114590_15	1232446.BAIE02000002_gene829	79.7	6.95e-18	N/A	N/A
structural_annotation	UHGV-0114590_15	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_16	phrog_19734	117.4	9.3e-35	N/A	unknown function
UniRef90	UHGV-0114590_16	UniRef90_UPI001D15BD22	224.0	0	head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0114590_16	1232446.BAIE02000002_gene828	105.0	6.21e-28	N/A	N/A
structural_annotation	UHGV-0114590_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_17	phrog_2550	66.7	2.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0114590_17	1232446.BAIE02000002_gene827	99.4	4e-26	N/A	N/A
structural_annotation	UHGV-0114590_17	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_18	phrog_10	179.7	0	major head protein	head and packaging
UniRef90	UHGV-0114590_18	UniRef90_UPI001D139C25	832.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0114590_18	1235798.C817_04585	437.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0114590_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0114590_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0114590_18	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0114590_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0114590_19	K06904	151.7	7.00649e-45	N/A	N/A
PHROG	UHGV-0114590_19	phrog_80	173.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0114590_19	UniRef90_UPI001D141099	363.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0114590_19	1232446.BAIE02000002_gene825	250.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0114590_19	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0114590_19	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0114590_19	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0114590_19	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_20	phrog_12	167.3	0	portal protein	head and packaging
UniRef90	UHGV-0114590_20	UniRef90_UPI001D13A36B	767.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0114590_20	1232446.BAIE02000002_gene824	557.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0114590_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0114590_20	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0114590_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0114590_20	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_21	phrog_9	309.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0114590_21	UniRef90_UPI001D14D10A	1172.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0114590_21	1232446.BAIE02000002_gene823	936.0	0	Phage Terminase	N/A
Pfam	UHGV-0114590_21	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0114590_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0114590_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0114590_21	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_22	phrog_361	99.4	3.1e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0114590_22	UniRef90_UPI001D1546DE	243.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0114590_22	1232446.BAIE02000002_gene822	132.0	3.45e-38	Phage terminase, small subunit	N/A
Pfam	UHGV-0114590_22	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0114590_22	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_23	phrog_36	41.3	0.000000000029	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0114590_23	TIGR01637	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_25	phrog_1689	66.8	5.3e-19	nucleotide kinase	other
UniRef90	UHGV-0114590_25	UniRef90_UPI001D150D86	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-0114590_25	411473.RUMCAL_00920	98.6	7.17e-26	N/A	N/A
Pfam	UHGV-0114590_25	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0114590_25	PF11753	N/A	N/A	N/A	N/A
KOfam	UHGV-0114590_26	K03111	130.2	2.6e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0114590_26	phrog_44	140.3	1.19993e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0114590_26	UniRef90_UPI001D13B790	248.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0114590_26	518637.EUBIFOR_00985	156.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0114590_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0114590_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0114590_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0114590_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0114590_26	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0114590_27	PF11061	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0114590_31	1235802.C823_04654	50.1	0.00000176	N/A	N/A
KOfam	UHGV-0114590_32	K04763	143.4	2.49992e-42	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0114590_32	phrog_1	122.0	7.3e-36	integrase	integration and excision
UniRef90	UHGV-0114590_32	UniRef90_UPI001D156F0D	565.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0114590_32	908340.HMPREF9406_2589	220.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0114590_32	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0114590_32	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0114590_32	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_33	phrog_8470	138.7	4.90454e-43	N/A	unknown function
UniRef90	UHGV-0114590_33	UniRef90_UPI001D1558B6	804.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0114590_33	742740.HMPREF9474_03121	86.7	0.00000000000000247	PcfJ-like protein	N/A
Pfam	UHGV-0114590_33	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0114590_33	PF14284,NF008072	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_34	phrog_7445	53.5	0.0000000000000045	N/A	unknown function
UniRef90	UHGV-0114590_34	UniRef90_UPI001D142670	228.0	0	PcfK-like family protein	N/A
eggNOG-mapper	UHGV-0114590_34	1122931.AUAE01000005_gene3272	55.5	0.0000000487	PcfK-like protein	N/A
Pfam	UHGV-0114590_34	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-0114590_34	PF14058	N/A	N/A	N/A	N/A
KOfam	UHGV-0114590_35	K02338	263.9	0	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	N/A
PHROG	UHGV-0114590_35	phrog_947	202.3	0	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0114590_35	UniRef90_UPI001D13CF1D	684.0	0	DNA polymerase III subunit beta	N/A
eggNOG-mapper	UHGV-0114590_35	518637.EUBIFOR_01905	191.0	0	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	N/A
Pfam	UHGV-0114590_35	PF00712	N/A	N/A	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
Pfam	UHGV-0114590_35	PF02767	N/A	N/A	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
Pfam	UHGV-0114590_35	PF02768	N/A	N/A	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
NCBIFam	UHGV-0114590_35	TIGR00663.1	N/A	N/A	DNA polymerase III subunit beta	N/A
COG	UHGV-0114590_35	COG0592	N/A	N/A	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	N/A
structural_annotation	UHGV-0114590_35	PF02768,PF00712,PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
PHROG	UHGV-0114590_36	phrog_428	114.1	2e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0114590_36	UniRef90_UPI001D14D4CB	390.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0114590_36	428127.EUBDOL_01512	117.0	6e-29	DnaD domain protein	N/A
Pfam	UHGV-0114590_36	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0114590_36	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0114590_36	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0114590_36	PF09524,PF07106,MF_01177,TIGR02220,TIGR01610,COG0640	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0114590	Yes	26,157	36	72	1