vOTU vOTU-170860

vOTU: vOTU-170860

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-170860
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium butyricum
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-04837 → vOTU-170860
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium butyricum
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0036876
Biosample ID	N/A
Genome length (bp)	28,941 bps
CheckV completeness	73.17% (Medium-quality)
CDS count	40
CDS density	93.12%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium butyricum	Total connections	33	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium butyricum	Total connections	12	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 73.17)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0036876_1	phrog_12151	153.5	1.4013e-45	N/A	unknown function
PHROG	UHGV-0036876_2	phrog_3845	80.7	1.8e-23	N/A	unknown function
UniRef90	UHGV-0036876_2	UniRef90_A0A127EGV6	94.7	2.37e-20	bPH_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0036876_2	1294142.CINTURNW_3839	95.9	4.12e-20	N/A	N/A
KOfam	UHGV-0036876_4	K07273	194.9	0	acm; lysozyme	N/A
PHROG	UHGV-0036876_4	phrog_6219	167.7	0	endolysin	lysis
UniRef90	UHGV-0036876_4	UniRef90_A0A6L9ERT7	568.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0036876_4	931276.Cspa_c07940	285.0	0	cell wall binding	N/A
Pfam	UHGV-0036876_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0036876_4	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-0036876_4	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
PHROG	UHGV-0036876_5	phrog_37799	66.2	2.7e-19	N/A	unknown function
UniRef90	UHGV-0036876_5	UniRef90_A0A6L9EPU5	290.0	0	Protein utxA	N/A
eggNOG-mapper	UHGV-0036876_5	1151292.QEW_0990	145.0	5.29691e-43	Bacteriophage holin family	N/A
Pfam	UHGV-0036876_5	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0036876_5	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0036876_5	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0036876_5	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_6	phrog_2211	76.9	3.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0036876_6	935948.KE386495_gene1208	117.0	1.43e-32	N/A	N/A
UniRef90	UHGV-0036876_8	UniRef90_A0A2A7MJP2	75.5	2.61e-17	XkdX family protein	N/A
Pfam	UHGV-0036876_8	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0036876_8	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
eggNOG-mapper	UHGV-0036876_9	632245.CLP_1664	135.0	2.35e-39	N/A	N/A
UniRef90	UHGV-0036876_10	UniRef90_UPI0005C310C5	849.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0036876_10	632245.CLP_1663	389.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0036876_10	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0036876_10	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0036876_11	phrog_16267	174.0	0	N/A	unknown function
UniRef90	UHGV-0036876_11	UniRef90_UPI00082DA883	431.0	0	carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0036876_11	1499683.CCFF01000014_gene3896	431.0	0	Phage minor structural protein	N/A
COG	UHGV-0036876_11	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0036876_11	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_12	phrog_1401	86.2	3.1e-25	N/A	unknown function
UniRef90	UHGV-0036876_12	UniRef90_UPI000A16CD19	109.0	2.93e-28	N/A	N/A
eggNOG-mapper	UHGV-0036876_12	195103.CPF_0968	97.8	1.61e-24	N/A	N/A
structural_annotation	UHGV-0036876_12	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_13	phrog_1194	132.2	1.7e-39	N/A	unknown function
UniRef90	UHGV-0036876_13	UniRef90_A0A4U9RD70	140.0	8.88998e-41	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-0036876_13	1499683.CCFF01000014_gene3899	159.0	0	N/A	N/A
Pfam	UHGV-0036876_13	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0036876_13	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_14	phrog_1535	445.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0036876_14	UniRef90_A0A0A7FVV5	407.0	0	Putative membrane protein	N/A
eggNOG-mapper	UHGV-0036876_14	86416.Clopa_0587	410.0	0	phage tail tape measure protein	N/A
COG	UHGV-0036876_14	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_15	phrog_8355	130.0	3.4e-39	N/A	unknown function
UniRef90	UHGV-0036876_15	UniRef90_UPI001B38A767	179.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0036876_15	1415775.U729_2613	147.0	8.40779e-45	N/A	N/A
Pfam	UHGV-0036876_15	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0036876_15	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_16	phrog_8300	82.2	4.7e-24	N/A	unknown function
UniRef90	UHGV-0036876_16	UniRef90_UPI00156F73E9	114.0	1.39e-30	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0036876_16	1280692.AUJL01000027_gene2153	107.0	6.88e-29	N/A	N/A
structural_annotation	UHGV-0036876_16	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_17	phrog_820	134.7	3.9e-40	major tail protein	tail
eggNOG-mapper	UHGV-0036876_17	1415775.U729_2611	226.0	0	N/A	N/A
structural_annotation	UHGV-0036876_17	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_18	phrog_2595	100.1	1.6e-29	head-tail connector protein	connector
UniRef90	UHGV-0036876_18	UniRef90_UPI001C0D684F	189.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0036876_18	1294142.CINTURNW_1034	190.0	0	N/A	N/A
Pfam	UHGV-0036876_18	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0036876_18	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_19	phrog_556	70.7	1.9e-20	minor head protein	head and packaging
UniRef90	UHGV-0036876_19	UniRef90_UPI001D4D3E00	226.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0036876_19	1294142.CINTURNW_1033	170.0	0	N/A	N/A
PHROG	UHGV-0036876_20	phrog_8710	107.0	1e-31	N/A	unknown function
UniRef90	UHGV-0036876_20	UniRef90_UPI0018A9BDCF	130.0	3.95e-37	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0036876_20	1294142.CINTURNW_1032	132.0	5.87e-39	N/A	N/A
structural_annotation	UHGV-0036876_20	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_21	phrog_541	74.1	1.8e-21	head-tail adaptor	connector
eggNOG-mapper	UHGV-0036876_21	1294142.CINTURNW_1031	176.0	0	N/A	N/A
PHROG	UHGV-0036876_22	phrog_1378	74.0	1.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0036876_22	1280692.AUJL01000027_gene2159	70.5	0.0000000000000136	N/A	N/A
PHROG	UHGV-0036876_23	phrog_422	343.7	0	major head protein	head and packaging
UniRef90	UHGV-0036876_23	UniRef90_UPI001967891D	553.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0036876_23	742740.HMPREF9474_03505	469.0	0	N/A	N/A
structural_annotation	UHGV-0036876_23	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_24	phrog_2303	147.6	5.88545e-44	head scaffolding protein	head and packaging
UniRef90	UHGV-0036876_24	UniRef90_A0A0N7BTJ7	157.0	5.60519e-45	N/A	N/A
eggNOG-mapper	UHGV-0036876_24	195103.CPF_0955	192.0	0	N/A	N/A
structural_annotation	UHGV-0036876_24	PF10788	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_25	phrog_872	129.8	3.00004e-41	N/A	unknown function
UniRef90	UHGV-0036876_25	UniRef90_UPI0005C16BB8	308.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036876_25	749222.Nitsa_1194	137.0	2.84e-39	N/A	N/A
Pfam	UHGV-0036876_25	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0036876_25	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0036876_25	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_26	phrog_581	302.6	0	minor head protein	head and packaging
UniRef90	UHGV-0036876_26	UniRef90_UPI00071E9E98	801.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0036876_26	1294142.CINTURNW_1025	498.0	0	N/A	N/A
Pfam	UHGV-0036876_26	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0036876_26	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-0036876_26	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_27	phrog_533	268.2	0	portal protein	head and packaging
UniRef90	UHGV-0036876_27	UniRef90_UPI0005C17F27	940.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0036876_27	1280692.AUJL01000027_gene2165	692.0	0	N/A	N/A
structural_annotation	UHGV-0036876_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0036876_28	K06909	112.5	5.2e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0036876_28	phrog_10250	71.0	1.5e-20	N/A	unknown function
UniRef90	UHGV-0036876_28	UniRef90_UPI0005C20E23	928.0	0	terminase	N/A
eggNOG-mapper	UHGV-0036876_28	1280692.AUJL01000027_gene2166	804.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0036876_28	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0036876_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0036876_28	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_29	phrog_509	168.5	0	terminase small subunit	head and packaging
UniRef90	UHGV-0036876_29	UniRef90_UPI0013D0AD31	265.0	0	phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0036876_29	1211817.CCAT010000049_gene2490	191.0	0	DNA packaging	N/A
COG	UHGV-0036876_29	COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-0036876_30	K14060	174.3	0	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0036876_30	phrog_125	197.9	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0036876_30	UniRef90_UPI0005C18388	361.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0036876_30	1443122.Z958_p0027	300.0	0	Helix-turn-helix domain of resolvase	N/A
Pfam	UHGV-0036876_30	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0036876_30	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
COG	UHGV-0036876_30	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0036876_30	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0036876_32	K04763	76.4	4.3e-22	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0036876_32	phrog_216	130.0	1.2e-38	integrase	integration and excision
UniRef90	UHGV-0036876_32	UniRef90_UPI00071E9E1C	400.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0036876_32	1211817.CCAT010000007_gene1044	295.0	0	integrase family	N/A
Pfam	UHGV-0036876_32	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0036876_32	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0036876_32	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_33	phrog_15827	103.9	7e-31	N/A	unknown function
UniRef90	UHGV-0036876_33	UniRef90_A0A3P6JPY1	99.4	7.59e-26	Zn-finger containing protein	N/A
eggNOG-mapper	UHGV-0036876_33	1280689.AUJC01000011_gene1511	88.6	2.56e-22	DNA-directed 5'-3' RNA polymerase activity	N/A
COG	UHGV-0036876_33	COG1996	N/A	N/A	DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger	N/A
structural_annotation	UHGV-0036876_33	PF09723,TIGR02605,COG1996	N/A	N/A	N/A	N/A
PHROG	UHGV-0036876_34	phrog_9628	124.0	5.4e-37	N/A	unknown function
UniRef90	UHGV-0036876_34	UniRef90_A0A0B5Q5Y4	125.0	6.73e-34	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0036876_34	431943.CKL_1876	93.2	4.77e-22	N/A	N/A
UniRef90	UHGV-0036876_35	UniRef90_A0A0B5QLI1	155.0	0	RNA polymerase subunit sigma-70	N/A
PHROG	UHGV-0036876_36	phrog_421	127.9	7.7e-38	N/A	unknown function
UniRef90	UHGV-0036876_36	UniRef90_UPI000E48A103	459.0	0	N/A	N/A
eggNOG-mapper	UHGV-0036876_36	536233.CLO_1817	392.0	0	N/A	N/A
Pfam	UHGV-0036876_36	PF10979	N/A	N/A	N/A	DUF2786
COG	UHGV-0036876_36	COG1451	N/A	N/A	UTP pyrophosphatase, metal-dependent hydrolase family	N/A
eggNOG-mapper	UHGV-0036876_37	632245.CLP_2927	125.0	6.48e-37	N/A	N/A
eggNOG-mapper	UHGV-0036876_39	632245.CLP_0441	133.0	6.39e-39	N/A	N/A
PHROG	UHGV-0036876_40	phrog_14328	94.5	9.9e-28	N/A	unknown function
UniRef90	UHGV-0036876_40	UniRef90_A0A6B5A398	160.0	0	TFIIB-type domain-containing protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0036876	Yes	28,941	30	73	1