vOTU vOTU-171261

vOTU: vOTU-171261

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-171261
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-02927 → vGENUS-03903 → vOTU-171261
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemania → Holdemania massiliensis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1353994
Biosample ID	N/A
Genome length (bp)	19,030 bps
CheckV completeness	54.88% (Medium-quality)
CDS count	27
CDS density	89.05%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemania → Holdemania massiliensis	Total connections	17	Host agreement	70.59
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemania → Holdemania massiliensis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 54.88)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1353994_2	phrog_19734	70.0	2.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-1353994_2	999413.HMPREF1094_02006	49.3	0.00000887	N/A	N/A
structural_annotation	UHGV-1353994_2	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1353994_3	1232446.BAIE02000002_gene829	102.0	7.11e-27	N/A	N/A
structural_annotation	UHGV-1353994_3	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1353994_4	phrog_5	47.7	0.00000000000033	tail completion or Neck1 protein	connector
UniRef90	UHGV-1353994_4	UniRef90_R6UNR2	136.0	5.99e-38	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1353994_4	908340.HMPREF9406_2573	136.0	1e-38	N/A	N/A
structural_annotation	UHGV-1353994_4	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1353994_5	phrog_88	99.6	3e-29	major tail protein	tail
UniRef90	UHGV-1353994_5	UniRef90_UPI0018771F27	130.0	8.64e-35	phage tail protein	N/A
eggNOG-mapper	UHGV-1353994_5	33035.JPJF01000039_gene278	71.2	0.00000000000136	N/A	N/A
NCBIFam	UHGV-1353994_5	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1353994_5	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1353994_8	phrog_305	92.9	4e-27	tail length tape measure protein	tail
UniRef90	UHGV-1353994_8	UniRef90_A0A1Y4R6K5	169.0	3.15001e-40	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1353994_8	1160721.RBI_II00528	213.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-1353994_8	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-1353994_8	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1353994_9	phrog_33	58.8	1.3e-16	distal tail protein Dit	tail
UniRef90	UHGV-1353994_9	UniRef90_A0A1C5W6B6	169.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1353994_9	1123263.AUKY01000068_gene490	128.0	1.14e-33	tail component	N/A
COG	UHGV-1353994_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1353994_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1353994_10	phrog_1067	258.2	0	minor head protein	head and packaging
UniRef90	UHGV-1353994_10	UniRef90_UPI00189A8481	1270.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1353994_10	1123263.AUKY01000068_gene489	270.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1353994_10	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1353994_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1353994_10	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1353994_10	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1353994_12	phrog_819	57.9	1.4e-16	tail protein	tail
eggNOG-mapper	UHGV-1353994_12	999413.HMPREF1094_01998	70.9	0.000000000047	N/A	N/A
UniRef90	UHGV-1353994_13	UniRef90_UPI0018A0CCF2	412.0	0	LamG domain-containing protein	N/A
Pfam	UHGV-1353994_13	PF13385	N/A	N/A	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UniRef90	UHGV-1353994_15	UniRef90_UPI001F05C666	155.0	3.46e-38	C40 family peptidase	N/A
eggNOG-mapper	UHGV-1353994_15	428127.EUBDOL_01569	61.6	0.000000137	N/A	N/A
Pfam	UHGV-1353994_15	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
eggNOG-mapper	UHGV-1353994_17	33035.JPJF01000090_gene94	70.1	0.0000000000000271	N/A	N/A
PHROG	UHGV-1353994_19	phrog_1758	111.5	6.9e-33	acetyltransferase	other
UniRef90	UHGV-1353994_19	UniRef90_A0A2S6NZ58	122.0	2.4e-31	N-acetyltransferase	N/A
eggNOG-mapper	UHGV-1353994_19	1235798.C817_03484	124.0	1.22e-32	acetyltransferase	N/A
COG	UHGV-1353994_19	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
structural_annotation	UHGV-1353994_19	PF13673,MF_02210,NF000360,COG2153	N/A	N/A	N/A	N/A
KOfam	UHGV-1353994_20	K06400	266.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1353994_20	phrog_95	279.1	0	integrase	integration and excision
UniRef90	UHGV-1353994_20	UniRef90_UPI00189B90C5	781.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1353994_20	97139.C824_00759	211.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1353994_20	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1353994_20	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1353994_20	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1353994_20	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1353994_20	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1353994_21	K18843	70.7	2.8e-20	hicB; antitoxin HicB	N/A
PHROG	UHGV-1353994_21	phrog_497	70.4	3.1e-20	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1353994_21	UniRef90_UPI00091AFD7F	186.0	0	type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-1353994_21	931626.Awo_c25970	183.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-1353994_21	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-1353994_21	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-1353994_21	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-1353994_22	K07339	52.9	0.0000000000000059	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-1353994_22	phrog_353	96.7	1.1e-28	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1353994_22	UniRef90_UPI001C126C2F	94.7	1.86e-24	type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-1353994_22	468059.AUHA01000003_gene2049	87.8	1.74e-22	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-1353994_22	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-1353994_22	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-1353994_22	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-1353994_23	K18830	54.7	0.0000000000000018	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1353994_23	phrog_8	46.7	0.00000000000063	transcriptional regulator	transcription regulation
UniRef90	UHGV-1353994_23	UniRef90_UPI001E58B43D	216.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1353994_23	445972.ANACOL_03315	71.2	0.0000000000000388	N/A	N/A
Pfam	UHGV-1353994_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1353994_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1353994_23	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353994_26	PF09827,MF_01471,COG1343	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1353994	Yes	19,030	39	55	1