NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2044943897

Scaffold 2044943897


Overview

Basic Information
Taxon OID2044078008 Open in IMG/M
Scaffold ID2044943897 Open in IMG/M
Source Dataset NameMixed alcohol bioreactor microbial communities from Texas A and M University - 55C, Day 16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3527
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Mixed Alcohol Bioreactor → Mixed Alcohol Bioreactor Microbial Communities From Texas A&M University

Source Dataset Sampling Location
Location NameTexas A and M University College Station, Texas, USA
CoordinatesLat. (o)30.620833Long. (o)-96.341111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101010Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
2044995396F101010GGAGGMFRIENAYATVWSVEDKGNYVKGRISTSEKNKEGKYVNSNWFVTFVGKAKEPALALSTKDRIKITSGKISNTTTGEGKDKKSYLNVVIFDFENMSNSQTDNQMDDLPF
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