Scaffold SRMUA_GMSDS1U03GR1NX

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold SRMUA_GMSDS1U03GR1NX

Scaffold SRMUA_GMSDS1U03GR1NX

Overview

Basic Information
Taxon OID	2088090000 Open in IMG/M
Scaffold ID	SRMUA_GMSDS1U03GR1NX Open in IMG/M
Source Dataset Name	Rangifer tarandus platyrhynchus rumen microbial communities from Svalbard, Norway - Sample 549
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Macrogen
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	508
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rangifer Tarandus Platyrhynchus Rumen → Rangifer Tarandus Platyrhynchus Rumen Microbial Communities From Svalbard, Norway

Source Dataset Sampling Location
Location Name	Longyearbyen, Svalbard
Coordinates	Lat. (^o)	78.2166667	Long. (^o)	15.6333333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F093041	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
SRMUA_05074510	F093041	GGA	MKLSSPFLACQQYHDDRKAKSQKAFRRAALLRSKTAPLFCPVLIAMSIGRMIQRIIRCQTCRLAAKSIETSIDIAIRCSL

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