Scaffold JGI12071J15745_105001

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI12071J15745_105001

Scaffold JGI12071J15745_105001

Overview

Basic Information
Taxon OID	3300001568 Open in IMG/M
Scaffold ID	JGI12071J15745_105001 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Deep Indian Ocean - MP1374
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	983
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South of Port of Lincoln, Great Australian Bight, South Indian Ocean
Coordinates	Lat. (^o)	-39.23	Long. (^o)	135.19	Alt. (m)		Depth (m)	3995.55
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076187	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12071J15745_1050015	F076187	N/A	LVSVAITHFFEFISTEKFFENFKTSRNVKSFPNIPLIPDTDIFNASNLDTLFINSERK*

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