NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209517_10005407

Scaffold Ga0209517_10005407


Overview

Basic Information
Taxon OID3300027854 Open in IMG/M
Scaffold IDGa0209517_10005407 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16276
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (52.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012468Metagenome / Metatranscriptome280Y
F046040Metagenome / Metatranscriptome152Y
F051515Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0209517_1000540725F012468N/AADSAQKKLDSISDRKLKPGAVVTLSPREINAWIHEKAVKAFADGIRNDHVDLGPGTTDGNALVDLTKISKAKNVNPLIARLIEGERFLKVSIRVESAKGRATVFLTHVELSGVAVDGSILDFLIKHFVQPRYPDIKINEPFDLDFNIERIEIQPAAVRVLIKK
Ga0209517_100054073F046040AGGAGMKLSGSVLLLIGMGSFVFGINVPEISPASAGSAIALISGAVLVMRGRRKE
Ga0209517_100054074F051515AGGAGGMKFVGMVLFFVGLSSVAMAGGSAAPEISPASGVAALALVSGALLVIRGRRKK
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