NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009390

3300009390: Microbial communities of water from the North Atlantic ocean - ACM34



Overview

Basic Information
IMG/M Taxon OID3300009390 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117984 | Gp0126420 | Ga0103831
Sample NameMicrobial communities of water from the North Atlantic ocean - ACM34
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Georgia
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size104810559
Sequencing Scaffolds21
Novel Protein Genes29
Associated Families27

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica1
Not Available6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata1
All Organisms → cellular organisms → Eukaryota4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus1
All Organisms → cellular organisms → Eukaryota → Sar1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → surface water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorth Pacific Ocean
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000055Metagenome / Metatranscriptome3096Y
F000075Metagenome / Metatranscriptome2622Y
F000237Metagenome / Metatranscriptome1498Y
F000981Metatranscriptome814Y
F001583Metagenome / Metatranscriptome668Y
F002435Metatranscriptome559Y
F003081Metagenome / Metatranscriptome508Y
F004358Metagenome / Metatranscriptome442Y
F006113Metagenome / Metatranscriptome381Y
F006651Metatranscriptome367Y
F007607Metagenome / Metatranscriptome348Y
F009426Metagenome / Metatranscriptome318Y
F022892Metagenome / Metatranscriptome212Y
F025039Metatranscriptome203Y
F027191Metagenome / Metatranscriptome195Y
F028518Metatranscriptome191Y
F031108Metagenome / Metatranscriptome183Y
F031514Metagenome / Metatranscriptome182Y
F061505Metatranscriptome131Y
F064580Metagenome / Metatranscriptome128Y
F064686Metagenome / Metatranscriptome128Y
F068484Metagenome / Metatranscriptome124Y
F071924Metatranscriptome121N
F079565Metagenome / Metatranscriptome115Y
F090442Metagenome / Metatranscriptome108Y
F102647Metagenome / Metatranscriptome101Y
F103052Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0103831_1000617All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2240Open in IMG/M
Ga0103831_1001041All Organisms → Viruses → Predicted Viral1819Open in IMG/M
Ga0103831_1001076All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica1796Open in IMG/M
Ga0103831_1001565Not Available1551Open in IMG/M
Ga0103831_1007675All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Choreotrichida → Strombidinopsidae → Strombidinopsis → Strombidinopsis acuminata811Open in IMG/M
Ga0103831_1007957All Organisms → cellular organisms → Eukaryota798Open in IMG/M
Ga0103831_1011535Not Available684Open in IMG/M
Ga0103831_1012740All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata657Open in IMG/M
Ga0103831_1015476All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea607Open in IMG/M
Ga0103831_1016535All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis591Open in IMG/M
Ga0103831_1016961All Organisms → cellular organisms → Eukaryota585Open in IMG/M
Ga0103831_1017122All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium583Open in IMG/M
Ga0103831_1019655Not Available551Open in IMG/M
Ga0103831_1020356Not Available542Open in IMG/M
Ga0103831_1020515All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Postciliodesmatophora → Heterotrichea → Heterotrichida → Stentoridae → Stentor → Stentor coeruleus541Open in IMG/M
Ga0103831_1021296All Organisms → cellular organisms → Eukaryota → Sar533Open in IMG/M
Ga0103831_1021535All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani530Open in IMG/M
Ga0103831_1022553Not Available520Open in IMG/M
Ga0103831_1022841All Organisms → cellular organisms → Eukaryota517Open in IMG/M
Ga0103831_1023592All Organisms → cellular organisms → Eukaryota511Open in IMG/M
Ga0103831_1024275Not Available504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0103831_1000617Ga0103831_10006175F064580MKEVITEVSIKADRSDWNAVFNSIKVGVDDEGAGSYLKIVGEDKNNEGSVLTLDWEEWDALVEVVAKYRKEWEWK*
Ga0103831_1001041Ga0103831_10010415F064686MKNKITHEEYQKMWYALNDGIITEQEWRVFCDALFNQVLEENKDVMVRLKFR*
Ga0103831_1001076Ga0103831_10010763F004358MFGLITMLLTTLGATGMGSMLKIVAGTIQSINDSRQQKAQRELARDLAMSNANASFQKAVFEGGSEQESMFTRGTRRIIALIGMLNFATISILCTIWPSVTLVTFTPPENKESISILYGLVKFPSGADVTTAITTGHISLVSIATLGAIIGFYFTPGGKN*
Ga0103831_1001565Ga0103831_10015652F102647RNHLAVDSALEKESIKEAVIDGHNQINEASSKLESVAKENAVLKEQLDQVKANLILEQKTAGLDKKAQKYARKVLSGKSEEFINENFDYTMKLFKKNESNRLDMLKEEAFSARENVDRVIYEHTTEEKVVEESSNPYMDELSKY*
Ga0103831_1007675Ga0103831_10076752F002435KETGCWVNTGMFVQVWSAIRDAGHATNHNWVIKVDADAVFFPSKLVRALSDYTVPQEGVYMENCKYVDWGYFGNLEVFSKQAFITLVDNLETCYTAIPWKDGVLGGKYGPTGEDLFAQKCMDMLGVGRQENWMLTTDGACQADRPEEEKHNKKYVPPCEGVSTPTIHPYKKPEMYRKCWQQAVEA*
Ga0103831_1007957Ga0103831_10079571F022892PLAKSIGVFITILPPNIVAIQLKILIPVGTAIIIVAAVK*
Ga0103831_1011535Ga0103831_10115351F071924LRLKVKTRTALEQIVPFVEFCQRENLIVSVSCPISTKKGRQQVRGFLAYLQTRNEGDADRVEELIQQYNASNNSPFNTWHRIPPSTWKNQA*
Ga0103831_1012740Ga0103831_10127401F001583VFNNIYKTYYIMFTNKHLNVDQLTRFMVLHYFTP*YYLYLVKLHIMFCHES*DTDSGENTYEDKTGSYIS*FYDGFLKEIQDA*Y*TIFAFMYFFMHHFQGATVNYFFFER*NISELDEIRFYGVAPH*YFRPLMGVLVITPTHYEGLM*FVL*LLLLAILPIIYNFYNGYTRYVNAIPMQNSLLQTTFFIVFMMCIYCSASMLPCGRYYYEPEGGYV
Ga0103831_1015476Ga0103831_10154761F001583NHLSDLTLTIGANIFWSLFNNTYKFYYIIFTNKHLNTDQLTRFMVFHYFTPFYYIYLVKLHVLFCHES*DTDSGETTYEDKSGTYVS*FYDAFLKEIQDAWY*VLYIYVYFFLHHFNGSTVNYFFFER*NIAELDEIRFYGVAPH*YFRPFMA*LIACPHHKTGIFGVIFYFIILFYQPTLHGTSEFNNFNKKTAVFMKYKI
Ga0103831_1016535Ga0103831_10165351F028518IFFCLQGLIILVVGIALCLGDDAVIPEQLKPIDSLRVRLIGPTELTLSAYLFGSILTGEAQAMQPFCGLFLLVAVALHYVIGDVEGCPMIIGMAMAHICLGLFWKAKDEAKKQ*
Ga0103831_1016961Ga0103831_10169611F068484VSIRTMNSHTYETRTVDYINLQGLGASTDNFFTVSQPFTAAHAEKRIFLNFKGTTSSAACSGRGLCDGSSAECQCFKGYTGQACQIQNALAA*
Ga0103831_1017122Ga0103831_10171221F003081ELREEMFNDTRFGAEVYYMHVRGVDTLMILSYLHILKKIFLKS*
Ga0103831_1017280Ga0103831_10172801F103052MHDLQHTFKLAGDGFWGAEKGRTVTITGYEVARYTQEQIDDYVDWAKVGDIEHVSVMHNSTWDVYTDSAFVDAARTVTGIADLDFTEQGMQDDNVASMEV*
Ga0103831_1017395Ga0103831_10173951F031108MHLSGYNGADEDEIMDNIFSRFSKEGRTPSGHKTGQKLLMKDDAKLAAGTVLEAAHKLAPKDVPGYLDANFENAWQHFDQNHEGWIRYEETHTFQRYLMGSLN*
Ga0103831_1019465Ga0103831_10194651F000237ES*DTDSGENTIEDKSSTYIACFYDAFLKEIQDA*F*TQFVFIYFVLHHFNASTVTYHFFER*NISELEEIRFYGVAPH*YFRPLMGLLTITPTHYEGLL*MGM*FLLIAAMPLTNSFYNSGVKYLPVIPSQSSLLQTSAFIIFMLSMYCAASMLPCGRYYYDPEGGYVGNP*VKISYQFIYLY
Ga0103831_1019655Ga0103831_10196551F006651SATVTGACSADEQAALADPATTGQKANDCGTKSFNVLTGNFNHDKFNECFTASAGISTGCSECYAVSGEYGAANCKADCLLGWCKSGCLECTKPAQADLATCTGFATPTADPCETISV*
Ga0103831_1019791Ga0103831_10197911F061505QTAAKEKKAGIEASIAEATDGVSALTDEIATLEQDIKDLDKAVAQATEQRKEEHADFTSFSTENNAAQQLLAKAKNKLFKFYRPNLHKEAPKRELTDEEKILASSGRSDMIATDAPQMIAGTTQTVYVQMKDNAGAGPPPPPETWGAYQSKEGKSNGVIALLDNLVKELKDEFTEAKHDEET
Ga0103831_1019949Ga0103831_10199491F025039VKMALKVLNDYYSKSDKAHDSADGASTGIIGLLEVCESDFSKALAEMTAEEQTAAAAYDAETKENEIMKVTKEQDVKYKTQEFKGLDKEITELTSDKETSGTELAAVMEYYGKIKDRCVAKPETYEERTKRRNAEIEGLKQALQILNDQTAFVQRKRRGFRGAIQ*
Ga0103831_1020304Ga0103831_10203041F000055SAEAIRGPPPPTAADTPSSGYYGADEDDVMNNIFNHYAVPVTNAAGQATGQHVLYRDGAQKACAEILLVTKQGSEAKMEAYMAEFFPRTWAKFDMNNTGEIDITESHTFFRSLLGRLNQFVLAPGSLTDISV*
Ga0103831_1020356Ga0103831_10203561F031514MWDVVYVDEWKGEPTKGQMNEDFGLIAEKDFYVVSAMSSGRYLDLINNRNLVIKTSNQRRTQVWYFDQRSLTIKTRYNNQSWDIQNSGRTNNMQIWSSNSNWF*
Ga0103831_1020515Ga0103831_10205151F079565GGASTIHTIEGPGNDGCTAWGCRVSEHYSNSKFHMRIEHDASGAWTITSDGQVLCGWNPAPDNRAWDYIKQMHQQRGSVIYSSEWTGWVPVDDCGTDEGDLYGSSFSISNLKISGSVVQGPEPTECPSSVSV*
Ga0103831_1021296Ga0103831_10212962F027191MQRKERKERLKNEIEKPLLHSINLVRVVRLLISPKKKRMKIEVSKTMKPAFLLGTAFNIAYWHRKYHSGTICKGVSNALTSKALSGCEREDTPK*
Ga0103831_1021535Ga0103831_10215351F007607HFIQKPQRMAQFATGMNGDEDLGEDITMKGDKFHFIQRPAANKLFATGMNGDEDLGQDITMKGEKFHYNQPSFVQFATGMNGDEDLGQDITMKGEKFHYNQSNLVQFATGMNGDEDLGQDITMKGEKFHYNQQ*
Ga0103831_1022553Ga0103831_10225531F009426FLKVKLKNESFSTAAKVNKNVKLLLNMTLDEILYTIIFFMTTSPCVISAGAARETLFEGKADYCMIVCE*
Ga0103831_1022828Ga0103831_10228281F000075VNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103831_1022841Ga0103831_10228411F006113AAIICGVSATLSHEQLDEIAFNALHSETYESSFLEVMSDEKGSRCPVGRVGCPMCYDIVDRFNQDVEIPEHNEAFEHFCDGYINKRWKASYEMLTGGQLDPMKEKIRCVSVSAGVKERFVQGCPRGNCAAASACSAFC*
Ga0103831_1023592Ga0103831_10235921F000981RGVLGLDQFVEWAFDHVISKIGKVPAKDVGLYQVQDYTEEEYIGFVERAVNNPGSYEHASFYNFILNCFVEADEQCEGRITYDQFDKLLSRAATVPRHFGLAPPESSVEARKKMFDELELKRGGKGTGYVTARTFWEWTVVHVKGMIDLQKAGKGWRENH*
Ga0103831_1023808Ga0103831_10238081F000075LLVSLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103831_1024275Ga0103831_10242751F090442LFQLEYESGKSGIRRGIPAKPRKCIGKKQTLTPINVAQK*
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