NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300011426

3300011426: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)



Overview

Basic Information
IMG/M Taxon OID3300011426 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116274 | Gp0153827 | Ga0151147
Sample NameFecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E36 Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size425440977
Sequencing Scaffolds23
Novel Protein Genes25
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.11
All Organisms → cellular organisms → Eukaryota3
Not Available8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta2
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Point Reyes National Seashore, California
CoordinatesLat. (o)38.04Long. (o)-122.5Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001230Metagenome / Metatranscriptome741Y
F001598Metagenome / Metatranscriptome665Y
F003009Metagenome / Metatranscriptome513Y
F005470Metagenome / Metatranscriptome399Y
F007793Metagenome / Metatranscriptome344Y
F008027Metagenome / Metatranscriptome340Y
F009606Metagenome / Metatranscriptome315Y
F013050Metagenome / Metatranscriptome275Y
F032070Metagenome / Metatranscriptome181Y
F038036Metagenome / Metatranscriptome166Y
F039594Metagenome / Metatranscriptome163Y
F045048Metagenome / Metatranscriptome153Y
F053537Metagenome / Metatranscriptome141Y
F056259Metagenome / Metatranscriptome137N
F060691Metagenome / Metatranscriptome132Y
F060948Metagenome / Metatranscriptome132Y
F068418Metagenome / Metatranscriptome124Y
F074001Metagenome / Metatranscriptome120Y
F076689Metagenome / Metatranscriptome117N
F080069Metagenome / Metatranscriptome115Y
F083540Metagenome / Metatranscriptome112N
F086140Metagenome / Metatranscriptome111Y
F104187Metagenome / Metatranscriptome100Y
F105520Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0151147_1001331All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium878Open in IMG/M
Ga0151147_1002551All Organisms → cellular organisms → Bacteria1115Open in IMG/M
Ga0151147_1003471All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Hypocreomycetidae → Hypocreales → Clavicipitaceae → Claviceps → Claviceps purpurea → Claviceps purpurea 20.12758Open in IMG/M
Ga0151147_1022551All Organisms → cellular organisms → Eukaryota590Open in IMG/M
Ga0151147_1043638Not Available797Open in IMG/M
Ga0151147_1046171Not Available613Open in IMG/M
Ga0151147_1093638All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2739Open in IMG/M
Ga0151147_1094556All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta675Open in IMG/M
Ga0151147_1120861All Organisms → cellular organisms → Bacteria → Proteobacteria808Open in IMG/M
Ga0151147_1147319Not Available1275Open in IMG/M
Ga0151147_1159864All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta575Open in IMG/M
Ga0151147_1164073All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1622Open in IMG/M
Ga0151147_1199686All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae551Open in IMG/M
Ga0151147_1206947Not Available779Open in IMG/M
Ga0151147_1207707Not Available522Open in IMG/M
Ga0151147_1241282All Organisms → cellular organisms → Bacteria → Proteobacteria1745Open in IMG/M
Ga0151147_1291873All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae1016Open in IMG/M
Ga0151147_1313349All Organisms → cellular organisms → Eukaryota735Open in IMG/M
Ga0151147_1334045All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata1406Open in IMG/M
Ga0151147_1342263Not Available525Open in IMG/M
Ga0151147_1350628All Organisms → cellular organisms → Eukaryota514Open in IMG/M
Ga0151147_1406474Not Available830Open in IMG/M
Ga0151147_1456621Not Available849Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0151147_1001331Ga0151147_10013313F001230QLTADAAIANAHAWFEVNSGWAPPDEDTLAEWVDDGVCRCPDECLVEPEAWCHHGLASWWLILGALD*
Ga0151147_1002551Ga0151147_10025511F001230QLTADAAIANAHAWFEVNSGWAPPDEDTLAEWVDDGVCRCPDECLVEPDAWCDHGLASWWLILGALD*
Ga0151147_1003471Ga0151147_10034714F032070MVCHYLFCSLLTNILLKKPNDLIGVDRDKGHNIGFFSFKMTFTANAKTTGVPDFGVIHIDPVETAKAFQTYLNTASKLTGVALDDISTTVITMPADPANVTLADLLKLGMKLFDAIVWITAGRPKSHPLQADPGMTKESISSLHDIARAVFYCYFMLLTQARYPVGRNTSDKPKIPNFLKTIMGMDKEQHHYVEMICSFEPQKFDPAWVKFVSFKDFGQETLSRFGLGLAGKRMFGPFSIYQPRPDIDENLLKAFRFARTVAKAPASWAVHPLTRDPNILTARGNLNKNLANLALEVFTKEDLEEMVKTRVLYAMPVHDPAHRQYLLWDAEDDITGSSFIFGSE*
Ga0151147_1022551Ga0151147_10225512F068418MDSWVWDQVGLEFSDIDVEGTIESQRSSQRGDNLSDKSVQVGISGSFDIELSSADIVDSFVIKHNSDISMFQKGVSGQ
Ga0151147_1043638Ga0151147_10436381F083540MFSPKKMFSPRAYRKNLNKHQMLLDEEHHSDLVELHSDSFSVFQHSPVQKSLDLLEYRVDFKGSAFKDCVYMRDIHDNKILKAKTATWSLDHKFKVANLQQPDVWGTACAKLGIDACKYLIYFRDIEKAWFRKTMVKNRQYYYEVEFMDFRPNKWTIEAPALHRMVIKRDDGIVATLNRGCFEIHEFLSTEDTFVVQCIVLLFAQAFIDGVCLP*
Ga0151147_1046171Ga0151147_10461712F038036MFVEELKHALGMITRVLADPRCKPGHGDQLRRAKRELQVVLRSGKLDENRLFRAIEIVATVLKEIVEDEAAQRPE*
Ga0151147_1091588Ga0151147_10915881F076689VESIYAVYNPSLVTAMALTREKFENRVLHDAALFYAEKWKNDNATRVILKRRQWVKDTFIKRVAEFTWNHDLAVPIIPTIHGTAAAVAWKICHGGFATLSSLDIGFFGAGIYFTTSAKYAIPYFATKAQPAIIISFLVPGNPYPVIENPNREGSLAGEVIKVGYQSHYVLTTNRGMPFEKIEYKNIFDEIVVDQESQVAPAYVLMLDNKGFPALIRDFEKRTSEDDSANEDYDRT*
Ga0151147_1093638Ga0151147_10936382F060691MLMAVEGMDPTLKMIFFAAAVVLFVLAAIGYSRGKVSFLAAGLAAFAIPFFWDALAAS*
Ga0151147_1094556Ga0151147_10945561F039594WDYQFYYSLSSRPQSMRWRVVVTSGEGVLVTVRNHRCPLQADWAKEVWCDADYFDRPWMCDIEIPTRAAHPGDNAYFVSVAGKNATYSIAFWRGRENCHAFSGSGRREGLNFCSGLVRYATWRWEDYQQLDNQAQCFYEELYRHFRVQPCWNGVSVSCNQTLQEFACHESFHRCDEDGFAVGTCRDSCDAVVYECVNHFETVDLEHYNCTSSRYLDSRAETCTG
Ga0151147_1120861Ga0151147_11208612F080069MSLKPLKRIAAILGCTMTLAAAMPAFADDIAGDWLFDTSKFADNDCQINGRITFTPTRVKNTYTCLFVSEQICGKLNGNLYIRVQQSCTAQRIGKQVAIKSKVDKVEERRPAMPNPEDWYLADNFIVQLSNNKAEMNGEHYDEQRNLKARFWRDVELVG*
Ga0151147_1147319Ga0151147_11473192F013050MSKGKQPRTRVKVPKLLLSEIKKVFIKVDKKMGLEAAII*
Ga0151147_1159864Ga0151147_11598641F056259KMGGNNTKGLYLCETIYPPPDGRTCIPPEKLRKAIEKGLIPASAANQFTGDDDADDDMDSRIDQGIRDVWAYYDKKNKGFLTKGEAETFFKDAFSILCLRKGVKAKDILPPGMSEGKAISQSLAKMDKNGTGKIDYNSFEEFINMLDLDEAMSLFTGQSGPISVNTDKVKMVDTSQFAAGAKANAANIQYR
Ga0151147_1164073Ga0151147_11640732F053537MKYMHKAIWQADGNLVIRGNSRALLFRALDDARAELGKHGDAADPQVVHTLQALQDVLGAYDGPLPSATELLGDPARERLARNLLKG*
Ga0151147_1199686Ga0151147_11996861F074001MHKNSPGAQLDQVSAKTDEVQRELEVASAELGLTHGALDRHLPPAQRNGDVAWAIAQNAALERKVAQAAEDLEEVVGMLEQVKAEVAG*
Ga0151147_1206947Ga0151147_12069471F104187NKPLSRVTHLYYGDRWVWLKTTLKGVTSQSVLRSDDENFPIERVEKWLTDDKRIISVSYGLEDKTYVIISHRYDFDQPRVGGQKLFVSNSFPEQKIRDAWKTNSRVNILAYCKNSWVLVTEENPTEVIGQSLSTWTDIEDVKAEVGKLWKADKQVQTLVHGQIDGEWKWVLLAQKTDGKQAGQAFYVNSDWPMDKISDYYKDKKYITTLAWNQPEEYWVLICGPVAGGQSLSTTGDFPSEKVQAMENLYFYGKRD*
Ga0151147_1207707Ga0151147_12077071F001598SGGVGTKENGIELVGQRDKFLSIKWDTVEGASSYVVFKEVRDVWDMQGITEVAKDTLGALRPGNKYLIRVLALDSSGCRLKILGPATFITEGPEDKRQPKVKLDSLEKNWEEVLSAYPAPAAKADPYSGPNVCPYHWQCTLKDNLAHCTEYNHLPKPLACPNGAGCMLVSNNT
Ga0151147_1241282Ga0151147_12412823F086140MATQTVQQVVDYLKAHPDVARKAMDYVKSHPGDVKNALKEVATERGWDLSKIDTAAITKELGNIVPH*
Ga0151147_1291873Ga0151147_12918731F105520TSGPPARRHAAAMDAKPKLDLPRTELDFLQRLLLDLQRRLQAGGDCHDEEHVAALELALAILQWDGTVPPPLDAQVGLGAAVESRLGPDAMCALRQWRTERRKALAPVQAPAR*
Ga0151147_1313349Ga0151147_13133491F005470MSSIKLRKEGQLITEFPADMVPRSRLLTKLVEEFNSTEVDLEPAPGKDFSPATINKVKEFLQKFDKGLSKMPKKPLLIFVTYNDWLDNNFEEKLREWLEEFLKPKSFYDLVELFNAAFYLQIDDLREICAARIAHSIILERKAPEDFLRDFGIVTQYQDFFTPEEEAKFIEKEFINKNDFEGVAAEEEDELNKE*
Ga0151147_1334045Ga0151147_13340453F060948MILQVVTFFGLVLCCTHLSEITLTIAANIMHTFFLFHGKVYWWIFTDKNLNTDTLIRLAYGHYVSAFYMAYLGVLHGIDMHYDWKNESTYDGLETEMS*
Ga0151147_1334045Ga0151147_13340454F003009YFNTSILNLVKYFASLTVSFHDVHSLFGFFIILVVFSQLVSGTMLSFSLVPEAMMVPLVRDEEDIEDLYTDDFF*
Ga0151147_1342263Ga0151147_13422631F008027TTMGKHHVKILVANYGGKDVTSIAKQQHKMNTSFQATNQAFGDPLPNVPKFLHVIYSYHGVLGSVAIPEGQQFRPHPPAHHVLGALYGGADVTHKVQSLGHSFQVSNAHFGDPNPGVYKTFSVAYVKNGELKTIVAKENEHVNLH*
Ga0151147_1350628Ga0151147_13506281F007793MAIRALCKNPLETDLNAALAAVGDDISFAQYQGLYNKVWPKPDQQDGDLRKLMQMLDHDDNGRVQEGEFRQLLLSVGDVLSHQEVDLLFEEVPVDDQGFFRYDMLVDKLVGGHMPH*
Ga0151147_1406474Ga0151147_14064741F009606HNDSSRGPNVIRTKAKPKINPVTGANFEYVNESRIGESFVVCLAGPSGVESFTFHHPIGLTDVDYEDWVCTPTGDIPSLLSRQVDPDEADRKAKRDKHRLDLCVEAKLLQRDGIDGPLTYPDTGVKRQDVLAAARTAAKDAIKADKGKPSPDLYVRFLPLEVQEKEVAVRKFLATPSTIRKAEAKYPASGFRTRGGPLADRAQLGVDYLTGKTRSQASDAVTKRIFGLDIATT*
Ga0151147_1456621Ga0151147_14566211F045048VFNKGSSNGFIADIPNGGQAQPNSTVGANALWKNAQKIARKNKASDTINKATPIFIPRWTELVWSPK*
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