vOTU vOTU-010513

vOTU: vOTU-010513

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-010513
Number of genomes	5
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00063 → vGENUS-00033 → vSUBGEN-12128 → vOTU-010513
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula_A
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0149762
Biosample ID	SAMN05827160
Genome length (bp)	36,246 bps
CheckV completeness	99.90% (High-quality)
CDS count	53
CDS density	94.72%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula_A	Total connections	119	Host agreement	84.03
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-0149762_1	COG2165	N/A	N/A	Type II secretory pathway, pseudopilin PulG	N/A
KOfam	UHGV-0149762_2	K02654	71.1	2.3e-20	pilD, pppA; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]	N/A
UniRef90	UHGV-0149762_2	UniRef90_E4LDC5	347.0	0	Peptidase, A24 family	N/A
eggNOG-mapper	UHGV-0149762_2	479436.Vpar_1081	363.0	0	aspartic-type endopeptidase activity	N/A
Pfam	UHGV-0149762_2	PF01478	N/A	N/A	Type IV leader peptidase family	Peptidase_A24
COG	UHGV-0149762_2	COG1989	N/A	N/A	Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase	N/A
UniRef90	UHGV-0149762_3	UniRef90_W1XAK8	96.3	8.2e-25	Type II secretory pathway pseudopilin PulG-like protein (Fragment)	N/A
eggNOG-mapper	UHGV-0149762_3	479436.Vpar_1082	115.0	1.87e-32	General secretion pathway protein	N/A
COG	UHGV-0149762_3	COG2165	N/A	N/A	Type II secretory pathway, pseudopilin PulG	N/A
PHROG	UHGV-0149762_5	phrog_10797	188.5	0	N/A	unknown function
UniRef90	UHGV-0149762_5	UniRef90_UPI0018C518C1	116.0	3.89e-29	glycoprotease	N/A
eggNOG-mapper	UHGV-0149762_5	883156.HMPREF9282_01266	152.0	3.50325e-44	N/A	N/A
structural_annotation	UHGV-0149762_5	PF06531	N/A	N/A	N/A	N/A
KOfam	UHGV-0149762_6	K07273	155.7	0	acm; lysozyme	N/A
PHROG	UHGV-0149762_6	phrog_6745	124.7	8.5e-37	endolysin	lysis
UniRef90	UHGV-0149762_6	UniRef90_UPI001D0872FD	404.0	0	glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0149762_6	910314.HMPREF9220_0603	268.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0149762_6	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0149762_6	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0149762_6	PF01183,NF008377,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_7	phrog_199	40.2	0.000000000029	holin	lysis
UniRef90	UHGV-0149762_7	UniRef90_UPI000E74DE8A	334.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0149762_7	883156.HMPREF9282_00970	247.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0149762_7	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-0149762_7	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_8	phrog_9854	520.0	0	N/A	unknown function
UniRef90	UHGV-0149762_8	UniRef90_UPI000E7651BD	3032.0	0	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0149762_8	401526.TcarDRAFT_1293	880.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-0149762_8	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0149762_8	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0149762_8	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-0149762_8	PF18857,PF18013	N/A	N/A	N/A	N/A
UniRef90	UHGV-0149762_10	UniRef90_UPI001D07B8A4	664.0	0	Hint domain-containing protein	N/A
eggNOG-mapper	UHGV-0149762_10	1123288.SOV_4c02760	120.0	8.29e-27	N/A	N/A
Pfam	UHGV-0149762_10	PF13403	N/A	N/A	Hint domain	Hint_2
structural_annotation	UHGV-0149762_10	PF13403	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0149762_11	PF11039,MF_00084,NF000482,COG3818	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0149762_14	1485543.JMME01000005_gene872	348.0	0	N/A	N/A
structural_annotation	UHGV-0149762_14	PF11134,MF_00923,NF000022,COG4257	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0149762_15	1123288.SOV_4c02700	52.8	0.00000186	N/A	N/A
structural_annotation	UHGV-0149762_15	PF20387	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0149762_16	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_17	phrog_334	204.3	0	major head protein	head and packaging
UniRef90	UHGV-0149762_17	UniRef90_UPI000E723A53	624.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0149762_17	401526.TcarDRAFT_1286	257.0	0	N/A	N/A
Pfam	UHGV-0149762_17	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0149762_17	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0149762_17	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_19	phrog_156	348.1	0	portal protein	head and packaging
UniRef90	UHGV-0149762_19	UniRef90_F7NK66	373.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-0149762_19	401526.TcarDRAFT_1284	397.0	0	Tfp pilus assembly protein FimV	N/A
COG	UHGV-0149762_19	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-0149762_19	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0149762_21	K06909	115.3	7e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0149762_21	phrog_979	157.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0149762_21	UniRef90_UPI001D07F325	915.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0149762_21	1121091.AUMP01000003_gene2581	377.0	0	Terminase-like family	N/A
Pfam	UHGV-0149762_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0149762_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0149762_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0149762_22	K07474	122.8	5.6e-36	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0149762_22	phrog_51	130.0	1.2e-38	terminase small subunit	head and packaging
UniRef90	UHGV-0149762_22	UniRef90_UPI001D073EE5	250.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0149762_22	1280689.AUJC01000003_gene961	124.0	9.25e-35	Terminase small subunit	N/A
Pfam	UHGV-0149762_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0149762_22	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0149762_22	PF03592,COG3728	N/A	N/A	N/A	N/A
UniRef90	UHGV-0149762_26	UniRef90_A0A847PRP4	56.2	0.00000000348	Helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0149762_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0149762_26	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0149762_26	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_28	phrog_36	42.9	0.0000000000094	transcriptional regulator	transcription regulation
UniRef90	UHGV-0149762_28	UniRef90_A0A6N2ZMD2	57.0	0.000000303	Sigma-70, region 4	N/A
eggNOG-mapper	UHGV-0149762_28	706434.HMPREF9429_00383	60.8	0.0000000018	N/A	N/A
structural_annotation	UHGV-0149762_28	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_29	phrog_3878	44.2	0.0000000000035	N/A	unknown function
KOfam	UHGV-0149762_30	K01520	143.1	2.20004e-42	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0149762_30	phrog_135	143.0	1.3004e-42	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149762_30	UniRef90_UPI001D07D29E	287.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0149762_30	66692.ABC2847	123.0	1.22e-33	deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
Pfam	UHGV-0149762_30	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0149762_30	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0149762_30	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0149762_30	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0149762_31	K01160	41.2	0.000000000044	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0149762_31	phrog_34	42.4	0.000000000013	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149762_31	UniRef90_UPI001D065A38	263.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0149762_31	1273103.NM10_01114	94.7	4.54e-23	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0149762_31	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-0149762_31	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_32	phrog_21026	57.9	1.9e-16	N/A	unknown function
KOfam	UHGV-0149762_34	K00558	249.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0149762_34	phrog_116	278.8	0	DNA methyltransferase	other
UniRef90	UHGV-0149762_34	UniRef90_K9D671	459.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0149762_34	883156.HMPREF9282_00518	459.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0149762_34	MTase_II_00058	288.4	0	Type II methyltransferase	RM
Pfam	UHGV-0149762_34	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0149762_34	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0149762_34	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0149762_34	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_37	phrog_1672	49.4	0.00000000000006	N/A	unknown function
UniRef90	UHGV-0149762_37	UniRef90_F5L204	120.0	1.79e-32	Conserved domain protein	N/A
structural_annotation	UHGV-0149762_38	PF11305,MF_01360	N/A	N/A	N/A	N/A
KOfam	UHGV-0149762_39	K03111	146.8	2.29813e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0149762_39	phrog_44	128.2	6.9e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149762_39	UniRef90_UPI0019613F2D	246.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0149762_39	879309.HMPREF9199_0149	192.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0149762_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0149762_39	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0149762_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0149762_39	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0149762_39	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_40	phrog_5070	165.4	0	N/A	unknown function
UniRef90	UHGV-0149762_40	UniRef90_UPI00103291C8	94.7	5.33e-20	polymer-forming cytoskeletal protein	N/A
eggNOG-mapper	UHGV-0149762_40	768710.DesyoDRAFT_1067	92.8	9.82e-21	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0149762_40	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0149762_40	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0149762_40	NF040481	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_41	phrog_9804	89.5	3.6e-26	N/A	unknown function
UniRef90	UHGV-0149762_41	UniRef90_A0A7Y2L7R9	58.9	0.000000282	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0149762_41	1273103.NM10_01154	61.2	0.00000000378	N/A	N/A
structural_annotation	UHGV-0149762_41	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_42	phrog_1163	218.4	0	N/A	unknown function
UniRef90	UHGV-0149762_42	UniRef90_UPI001D075DB7	531.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0149762_42	372457.A7DYC7_9CAUD	201.0	0	calcium ion binding	N/A
Pfam	UHGV-0149762_42	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0149762_42	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
structural_annotation	UHGV-0149762_42	PF09524,PF09681,TIGR02220,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0149762_43	K07451	56.3	7e-16	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0149762_43	phrog_7370	51.0	0.000000000000024	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149762_43	UniRef90_UPI001D092C21	179.0	0	HNH endonuclease	N/A
Pfam	UHGV-0149762_43	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0149762_43	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0149762_43	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_44	phrog_72	53.6	0.0000000000000028	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149762_44	UniRef90_R5BGH3	126.0	1.53e-33	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0149762_44	445972.ANACOL_01825	99.8	6.78e-24	N/A	N/A
PHROG	UHGV-0149762_45	phrog_14970	279.6	0	N/A	unknown function
UniRef90	UHGV-0149762_45	UniRef90_A0A1C5NV07	222.0	0	DNA damage response protein A	N/A
eggNOG-mapper	UHGV-0149762_45	428127.EUBDOL_01248	215.0	0	double-strand break repair protein	N/A
COG	UHGV-0149762_45	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0149762_45	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_46	phrog_253	131.6	4.9e-39	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0149762_46	UniRef90_UPI001D06B209	286.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0149762_46	1226322.HMPREF1545_04074	90.1	1.38e-20	Siphovirus Gp157	N/A
Pfam	UHGV-0149762_46	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0149762_46	PF05565,NF002139	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0149762_48	NF008912	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_49	phrog_7735	72.7	4.5e-21	excisionase	integration and excision
UniRef90	UHGV-0149762_49	UniRef90_A0A2S7ZGX8	96.7	4.4e-24	HTH_17 domain-containing protein	N/A
Pfam	UHGV-0149762_49	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0149762_49	PF12728,NF033787,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0149762_50	K07727	42.4	0.000000000018	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0149762_50	phrog_8	60.5	4.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0149762_50	UniRef90_UPI0011DD19D6	79.7	1.7e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0149762_50	1304866.K413DRAFT_0834	79.7	9.86e-19	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0149762_50	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0149762_50	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0149762_50	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0149762_51	K18830	43.6	0.0000000000062	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0149762_51	phrog_8	60.2	5.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0149762_51	UniRef90_UPI000E7282BC	117.0	2.3e-31	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0149762_51	1304866.K413DRAFT_0834	75.9	3.61e-16	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0149762_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0149762_51	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0149762_51	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0149762_52	phrog_87	64.6	1.2e-18	metallo-protease	other
UniRef90	UHGV-0149762_52	UniRef90_UPI000E707E4F	251.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0149762_52	273068.TTE2126	70.5	0.000000000000248	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0149762_52	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0149762_52	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0149762_52	PF06114,COG2856	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0149762	Yes	36,246	39	100	1
UHGV-1541762	No	32,694	40	96	1
UHGV-1384097	No	23,485	39	69	1
UHGV-0198352	No	18,093	39	53	1
UHGV-1574315	No	11,930	39	35	1