vOTU vOTU-015321

vOTU: vOTU-015321

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-015321
Number of genomes	27
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Roseburia → Roseburia inulinivorans
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-03495 → vOTU-015321
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Roseburia → Roseburia inulinivorans
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0076511
Biosample ID	SAMEA2737876
Genome length (bp)	35,516 bps
CheckV completeness	83.66% (Medium-quality)
CDS count	56
CDS density	90.62%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Roseburia → Roseburia inulinivorans	Total connections	381	Host agreement	74.8
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Roseburia → Roseburia inulinivorans	Total connections	139	Host agreement	94.96

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 83.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
COG	UHGV-0076511_2	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-0076511_2	PF07691	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_3	phrog_18725	93.9	2.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0076511_3	1120746.CCNL01000014_gene2212	78.6	8.99e-16	N/A	N/A
structural_annotation	UHGV-0076511_3	PF13754,COG2372	N/A	N/A	N/A	N/A
KOfam	UHGV-0076511_4	K13276	65.6	3.7e-19	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-0076511_4	phrog_11157	219.4	0	N/A	unknown function
UniRef90	UHGV-0076511_4	UniRef90_A0A416HMQ3	353.0	0	Big_13 domain-containing protein	N/A
eggNOG-mapper	UHGV-0076511_4	1286171.EAL2_c11220	304.0	0	amine dehydrogenase activity	N/A
Pfam	UHGV-0076511_4	PF17957	N/A	N/A	Bacterial Ig domain	Big_7
Pfam	UHGV-0076511_4	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
COG	UHGV-0076511_4	COG3391	N/A	N/A	DNA-binding beta-propeller fold protein YncE	N/A
structural_annotation	UHGV-0076511_4	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_6	phrog_13879	274.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0076511_6	1232449.BAHV02000010_gene2725	162.0	1.81e-40	N/A	N/A
structural_annotation	UHGV-0076511_6	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0076511_7	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_8	phrog_1535	193.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0076511_8	UniRef90_A0A173WM72	221.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0076511_8	33035.JPJF01000043_gene1003	186.0	0	phage tail tape measure protein	N/A
COG	UHGV-0076511_8	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_9	phrog_706	140.2	1.19993e-41	N/A	unknown function
UniRef90	UHGV-0076511_9	UniRef90_UPI0011DC8B0C	219.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0076511_9	411902.CLOBOL_00127	192.0	0	N/A	N/A
Pfam	UHGV-0076511_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0076511_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_10	phrog_11299	87.9	8.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0076511_10	1449050.JNLE01000003_gene3883	72.8	0.0000000000000378	N/A	N/A
structural_annotation	UHGV-0076511_10	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_11	phrog_3099	116.8	1.7e-34	N/A	unknown function
eggNOG-mapper	UHGV-0076511_11	1160721.RBI_II00532	143.0	2.87995e-41	N/A	N/A
structural_annotation	UHGV-0076511_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_12	phrog_3266	73.0	3.6e-21	tail completion	connector
eggNOG-mapper	UHGV-0076511_12	476272.RUMHYD_01781	154.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0076511_12	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_13	phrog_556	73.2	3e-21	minor head protein	head and packaging
UniRef90	UHGV-0076511_13	UniRef90_UPI0008B4CFF0	136.0	4.39e-38	minor capsid protein	N/A
eggNOG-mapper	UHGV-0076511_13	476272.RUMHYD_01780	172.0	0	N/A	N/A
Pfam	UHGV-0076511_13	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0076511_13	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_14	phrog_3366	89.9	2.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0076511_14	476272.RUMHYD_01779	104.0	1.63e-26	N/A	N/A
structural_annotation	UHGV-0076511_14	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_15	phrog_541	93.9	1.4e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0076511_15	476272.RUMHYD_01778	63.2	0.000000000145	N/A	N/A
PHROG	UHGV-0076511_16	phrog_283	255.0	0	major head protein	head and packaging
UniRef90	UHGV-0076511_16	UniRef90_A0A316RCU2	410.0	0	P22 coat protein	N/A
eggNOG-mapper	UHGV-0076511_16	1297617.JPJD01000059_gene2633	400.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0076511_16	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0076511_16	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0076511_17	UniRef90_UPI001C0EBA51	111.0	5.47e-27	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0076511_17	1125725.HMPREF1325_1331	59.7	0.0000000185	Phage minor structural protein GP20	N/A
UniRef90	UHGV-0076511_18	UniRef90_A0A6L5YME3	61.2	0.0000000000276	Conjugal transfer protein	N/A
eggNOG-mapper	UHGV-0076511_18	1235835.C814_02704	50.8	0.0000000694	Cysteine-rich KTR	N/A
Pfam	UHGV-0076511_18	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0076511_18	PF14205,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_19	phrog_581	257.5	0	minor head protein	head and packaging
UniRef90	UHGV-0076511_19	UniRef90_A0A412EKN3	298.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0076511_19	33035.JPJF01000106_gene3134	273.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0076511_19	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0076511_19	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0076511_19	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_20	phrog_533	262.6	0	portal protein	head and packaging
UniRef90	UHGV-0076511_20	UniRef90_A0A1C6CDM8	395.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0076511_20	33035.JPJF01000106_gene3135	390.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0076511_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0076511_21	K06909	369.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0076511_21	phrog_3717	150.0	1.12104e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0076511_21	UniRef90_UPI000E54849E	780.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0076511_21	33035.JPJF01000106_gene3136	677.0	0	Terminase small subunit	N/A
Pfam	UHGV-0076511_21	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0076511_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0076511_21	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0076511_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0076511_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0076511_21	PF04466,PF17288,PF06056,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_22	phrog_33130	71.6	7.8e-21	N/A	unknown function
UniRef90	UHGV-0076511_22	UniRef90_A0A3B9CD52	68.6	0.000000000000225	S1-like domain-containing protein	N/A
structural_annotation	UHGV-0076511_22	PF10922,MF_00839	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_23	phrog_9479	137.5	7.50003e-41	N/A	unknown function
UniRef90	UHGV-0076511_23	UniRef90_A0A2N0UXN8	140.0	1.84999e-40	Ntox24 domain-containing protein	N/A
structural_annotation	UHGV-0076511_23	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_25	phrog_8680	265.7	0	N/A	unknown function
UniRef90	UHGV-0076511_25	UniRef90_A0A3R6K733	410.0	0	N/A	N/A
eggNOG-mapper	UHGV-0076511_25	411470.RUMGNA_02208	281.0	0	N/A	N/A
Pfam	UHGV-0076511_25	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0076511_25	PF14386	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0076511_30	PF18358	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_31	phrog_424	71.8	9e-21	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0076511_31	UniRef90_A0A2H4JC51	434.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-0076511_31	693746.OBV_43240	542.0	0	N/A	N/A
COG	UHGV-0076511_31	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0076511_31	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_32	phrog_874	162.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0076511_32	411468.CLOSCI_00298	182.0	0	N/A	N/A
structural_annotation	UHGV-0076511_32	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
UniRef90	UHGV-0076511_34	UniRef90_UPI001D046CFA	82.0	1.62e-17	N/A	N/A
eggNOG-mapper	UHGV-0076511_34	665950.HMPREF1025_02540	65.9	0.0000000000182	N/A	N/A
Pfam	UHGV-0076511_34	PF09643	N/A	N/A	YopX protein	YopX
PHROG	UHGV-0076511_35	phrog_10455	84.1	1.3e-24	N/A	unknown function
UniRef90	UHGV-0076511_35	UniRef90_R7N9Z9	137.0	5.70001e-40	Conserved domain protein	N/A
KOfam	UHGV-0076511_38	K02315	149.2	3.36312e-44	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0076511_38	phrog_50	147.4	1.09301e-43	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0076511_38	UniRef90_A0A1Q6KIH9	441.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0076511_38	742733.HMPREF9469_01844	233.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0076511_38	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0076511_38	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0076511_38	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_39	phrog_19658	47.0	0.00000000000028	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0076511_39	UniRef90_A0A4P8I8N3	137.0	5.77e-36	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0076511_39	1071400.LBUCD034_0926	114.0	2.9e-27	DnaD domain protein	N/A
COG	UHGV-0076511_39	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0076511_39	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0076511_40	K01160	42.6	0.000000000017	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0076511_40	phrog_1682	74.8	1.3e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0076511_40	UniRef90_A0A412FH46	254.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0076511_40	1235790.C805_00029	163.0	0	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-0076511_40	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0076511_40	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0076511_40	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_42	phrog_398	211.5	0	N/A	unknown function
UniRef90	UHGV-0076511_42	UniRef90_A0A4P8IGL9	280.0	0	N/A	N/A
eggNOG-mapper	UHGV-0076511_42	33035.JPJF01000122_gene2462	273.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0076511_42	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0076511_42	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_43	phrog_14970	216.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0076511_43	1235798.C817_00385	183.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0076511_43	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0076511_43	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0076511_43	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0076511_45	PF15513,NF007469	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0076511_48	PF11127	N/A	N/A	N/A	N/A
UniRef90	UHGV-0076511_49	UniRef90_UPI001C033D96	122.0	1.24e-34	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0076511_49	PF13443,MF_00535,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_51	phrog_8	53.1	0.0000000000000081	transcriptional regulator	transcription regulation
UniRef90	UHGV-0076511_51	UniRef90_UPI00156E2D91	100.0	1.36e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0076511_51	655812.HMPREF0061_0222	53.5	0.00000000801	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0076511_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0076511_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0076511_51	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_52	phrog_8	64.1	3.5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0076511_52	UniRef90_A0A3A6GF44	172.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0076511_52	1235802.C823_04750	137.0	7.47e-40	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0076511_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0076511_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0076511_52	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0076511_53	phrog_87	86.7	2.1e-25	metallo-protease	other
UniRef90	UHGV-0076511_53	UniRef90_A0A3R5ZQW8	290.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0076511_53	1235802.C823_04751	219.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0076511_53	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0076511_53	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0076511_53	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0076511_54	K07451	65.4	3.6e-19	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0076511_54	phrog_16726	64.0	1.1e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0076511_54	UniRef90_A0A3R6CIB5	557.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0076511_54	386415.NT01CX_1757	320.0	0	HNH endonuclease	N/A
Pfam	UHGV-0076511_54	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0076511_54	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0076511_54	PF01844,NF040563,COG1403	N/A	N/A	N/A	N/A
KOfam	UHGV-0076511_55	K14059	149.0	6.16571e-44	int; integrase	N/A
PHROG	UHGV-0076511_55	phrog_1	146.8	1.90577e-43	integrase	integration and excision
UniRef90	UHGV-0076511_55	UniRef90_A0A6L6L8L1	655.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0076511_55	1304866.K413DRAFT_1180	352.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0076511_55	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0076511_55	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0076511_55	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0076511_55	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0076511_56	743719.PaelaDRAFT_5811	45.1	0.00000636	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0076511	Yes	35,516	39	84	1
UHGV-1472505	No	39,749	40	89	1
UHGV-1377044	No	39,612	40	88	1
UHGV-2236796	No	39,567	39	88	1
UHGV-1381921	No	39,643	39	88	1
UHGV-1539176	No	39,532	40	88	1
UHGV-1946974	No	39,316	39	88	1
UHGV-0203611	No	38,868	39	87	1
UHGV-1466863	No	35,516	39	84	1
UHGV-1490955	No	36,642	40	82	1
UHGV-1971160	No	36,128	39	81	1
UHGV-2090990	No	36,030	39	80	1
UHGV-0073235	No	35,483	39	79	1
UHGV-1459957	No	35,483	39	79	1
UHGV-0049895	No	35,232	40	79	1
UHGV-1544899	No	35,232	40	79	1
UHGV-2090263	No	33,629	39	75	1
UHGV-1486422	No	26,359	39	59	1
UHGV-0068059	No	25,072	39	57	1
UHGV-1314700	No	25,075	40	55	1
UHGV-1450088	No	24,648	39	55	1
UHGV-1987286	No	24,343	39	54	1
UHGV-1512988	No	23,452	39	52	1
UHGV-1908513	No	15,749	38	37	1
UHGV-2089603	No	13,589	38	32	1
UHGV-1559740	No	11,358	40	27	1
UHGV-0063384	No	11,284	40	25	1