vOTU vOTU-106234

vOTU: vOTU-106234

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-106234
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Onthomonas → Onthomonas sp900752305
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00372 → vGENUS-05014 → vOTU-106234
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0181718
Biosample ID	SAMN09781772
Genome length (bp)	27,637 bps
CheckV completeness	71.87% (Medium-quality)
CDS count	47
CDS density	93.06%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	33	Host agreement	90.91
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Onthomonas → Onthomonas sp900752305	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 71.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0181718_1	phrog_270	53.3	0.0000000000000063	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0181718_1	UniRef90_A0A7X3DHC7	225.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0181718_1	1300150.EMQU_2516	67.4	0.000000000014	Helix-turn-helix domain	N/A
Pfam	UHGV-0181718_1	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0181718_1	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0181718_2	phrog_6499	137.7	3.39997e-41	transcriptional regulator	transcription regulation
UniRef90	UHGV-0181718_2	UniRef90_UPI001C01DF91	144.0	2.66e-40	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0181718_2	1226322.HMPREF1545_00092	120.0	8.59e-32	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0181718_2	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0181718_2	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0181718_2	PF01381,NF040522,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181718_3	1235835.C814_03153	82.4	4.5e-20	N/A	N/A
structural_annotation	UHGV-0181718_3	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0181718_4	K07729	59.0	1.2e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0181718_4	phrog_8	44.7	0.000000000003	transcriptional regulator	transcription regulation
UniRef90	UHGV-0181718_4	UniRef90_A0A6J4P2J1	60.8	0.000000000163	Transcriptional regulator, Xre family	N/A
eggNOG-mapper	UHGV-0181718_4	1504822.CCNO01000014_gene1280	61.2	0.0000000000954	sequence-specific DNA binding	N/A
Pfam	UHGV-0181718_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0181718_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0181718_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0181718_5	K22300	40.6	0.000000000046	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0181718_5	UniRef90_A0A6I2RMN8	94.0	1.65e-22	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0181718_5	742738.HMPREF9460_04038	92.0	9.41e-23	sequence-specific DNA binding	N/A
COG	UHGV-0181718_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0181718_5	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181718_7	UniRef90_UPI001956EF77	168.0	0	stalk domain-containing protein	N/A
eggNOG-mapper	UHGV-0181718_7	1226322.HMPREF1545_01476	114.0	8.76e-30	Copper amine oxidase N-terminal domain	N/A
Pfam	UHGV-0181718_7	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
PHROG	UHGV-0181718_8	phrog_17982	69.4	4.2e-20	N/A	unknown function
UniRef90	UHGV-0181718_8	UniRef90_UPI00195DC4C4	84.0	1.17e-18	N/A	N/A
eggNOG-mapper	UHGV-0181718_8	720554.Clocl_1541	81.6	1.57e-16	N/A	N/A
Pfam	UHGV-0181718_8	PF14020	N/A	N/A	N/A	DUF4236
structural_annotation	UHGV-0181718_8	PF14020	N/A	N/A	N/A	N/A
Pfam	UHGV-0181718_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0181718_9	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0181718_10	K14059	94.3	2.2e-27	int; integrase	N/A
PHROG	UHGV-0181718_10	phrog_1	130.7	1.6e-38	integrase	integration and excision
UniRef90	UHGV-0181718_10	UniRef90_G4L0W3	493.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0181718_10	693746.OBV_43340	493.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0181718_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0181718_10	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0181718_10	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181718_12	476272.RUMHYD_01772	56.6	0.0000000543	N/A	N/A
PHROG	UHGV-0181718_13	phrog_20016	191.9	0	N/A	unknown function
UniRef90	UHGV-0181718_13	UniRef90_A0A285PT46	197.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0181718_13	397290.C810_05214	166.0	0	N/A	N/A
structural_annotation	UHGV-0181718_13	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0181718_15	phrog_16490	144.8	1.96182e-44	N/A	unknown function
eggNOG-mapper	UHGV-0181718_15	1408437.JNJN01000043_gene803	146.0	1.22e-40	N/A	N/A
PHROG	UHGV-0181718_16	phrog_22984	68.7	5.1e-21	N/A	unknown function
PHROG	UHGV-0181718_17	phrog_21718	102.1	5e-30	N/A	unknown function
eggNOG-mapper	UHGV-0181718_17	397290.C810_05210	73.6	0.0000000000000299	N/A	N/A
PHROG	UHGV-0181718_18	phrog_3754	118.1	6.1e-35	N/A	unknown function
eggNOG-mapper	UHGV-0181718_18	1226322.HMPREF1545_00073	170.0	0	N/A	N/A
eggNOG-mapper	UHGV-0181718_19	411459.RUMOBE_01397	49.3	0.00000561	N/A	N/A
KOfam	UHGV-0181718_20	K07729	65.7	8.7e-19	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0181718_20	phrog_8	60.1	5.2e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0181718_20	UniRef90_A0A3C1D9L0	56.6	0.000000147	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0181718_20	637911.AM305_06926	56.2	0.0000000338	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0181718_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0181718_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0181718_20	PF01381,MF_02017,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181718_21	PF04545,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0181718_22	K08640	101.0	1.9e-29	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0181718_22	phrog_894	106.3	3.5e-31	endolysin	lysis
UniRef90	UHGV-0181718_22	UniRef90_K1TJK4	226.0	0	Peptidase_M15_3 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0181718_22	1235797.C816_04171	207.0	0	Peptidase M15	N/A
Pfam	UHGV-0181718_22	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0181718_22	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181718_22	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0181718_23	phrog_18955	59.2	4.5e-17	N/A	unknown function
UniRef90	UHGV-0181718_23	UniRef90_UPI00164D2830	374.0	0	phosphodiester glycosidase family protein	N/A
eggNOG-mapper	UHGV-0181718_23	696369.KI912183_gene2044	57.8	0.000000519	exopolysaccharide biosynthesis protein	N/A
Pfam	UHGV-0181718_23	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
COG	UHGV-0181718_23	COG4632	N/A	N/A	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	N/A
structural_annotation	UHGV-0181718_23	PF09992,COG4632	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0181718_24	TIGR01643.1	N/A	N/A	YD repeat-containing protein	N/A
PHROG	UHGV-0181718_25	phrog_13256	73.1	2.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0181718_25	1226322.HMPREF1545_00132	75.5	2.86e-17	N/A	N/A
PHROG	UHGV-0181718_26	phrog_1863	67.2	1.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0181718_26	748224.HMPREF9436_00408	93.6	3.28e-24	N/A	N/A
eggNOG-mapper	UHGV-0181718_29	657322.FPR_21910	53.5	0.000000678	N/A	N/A
eggNOG-mapper	UHGV-0181718_31	1226322.HMPREF1545_00062	66.2	0.000000000226	N/A	N/A
PHROG	UHGV-0181718_32	phrog_13879	526.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0181718_32	1235797.C816_02659	697.0	0	N/A	N/A
structural_annotation	UHGV-0181718_32	PF14594,PF06588,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181718_33	1235797.C816_02660	109.0	4.13e-29	N/A	N/A
structural_annotation	UHGV-0181718_33	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0181718_34	K10398	45.3	0.00000000000057	KIF11, EG5; kinesin family member 11	N/A
PHROG	UHGV-0181718_34	phrog_6900	258.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0181718_34	UniRef90_A0A373CK98	309.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-0181718_34	1216932.CM240_0625	333.0	0	tape measure	N/A
COG	UHGV-0181718_34	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0181718_34	PF20155,MF_04138,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181718_36	596328.HMPREF0578_1238	63.5	0.0000000000598	N/A	N/A
structural_annotation	UHGV-0181718_36	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0181718_37	phrog_88	111.0	7.2e-33	major tail protein	tail
UniRef90	UHGV-0181718_37	UniRef90_UPI0018771F27	298.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0181718_37	33035.JPJF01000039_gene278	128.0	1.54e-34	N/A	N/A
NCBIFam	UHGV-0181718_37	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0181718_37	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181718_38	UniRef90_R6UNR2	127.0	2.72e-34	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0181718_38	908340.HMPREF9406_2573	127.0	4.56e-35	N/A	N/A
structural_annotation	UHGV-0181718_38	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181718_39	999413.HMPREF1094_02005	84.3	7.83e-20	N/A	N/A
structural_annotation	UHGV-0181718_39	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0181718_40	phrog_19734	141.7	2.40042e-42	N/A	unknown function
UniRef90	UHGV-0181718_40	UniRef90_A0A6I7GNS7	163.0	0	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0181718_40	349161.Dred_2602	99.8	2.45e-25	N/A	N/A
NCBIFam	UHGV-0181718_40	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0181718_40	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0181718_41	phrog_749	72.8	3.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0181718_41	1211817.CCAT010000053_gene2133	81.3	1.36e-18	N/A	N/A
PHROG	UHGV-0181718_42	phrog_10	160.1	0	major head protein	head and packaging
UniRef90	UHGV-0181718_42	UniRef90_G9YSC0	694.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0181718_42	1235792.C808_00086	443.0	0	Phage capsid family	N/A
Pfam	UHGV-0181718_42	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0181718_42	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0181718_42	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0181718_42	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0181718_42	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0181718_43	K01358	136.0	3.8e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0181718_43	phrog_94	247.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0181718_43	UniRef90_A0A1Y4BT12	344.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0181718_43	349161.Dred_2605	275.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0181718_43	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0181718_43	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0181718_43	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0181718_44	phrog_12	113.6	1.3e-33	portal protein	head and packaging
UniRef90	UHGV-0181718_44	UniRef90_G9YSB8	562.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0181718_44	610130.Closa_0742	313.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0181718_44	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0181718_44	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0181718_44	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0181718_44	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0181718_45	phrog_9	245.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0181718_45	UniRef90_A0A6I7GGF0	944.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0181718_45	1235792.C808_00083	634.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0181718_45	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0181718_45	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0181718_45	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0181718_46	phrog_5110	58.1	1.4e-16	terminase small subunit	head and packaging
UniRef90	UHGV-0181718_46	UniRef90_UPI00195E8788	128.0	4.05e-36	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0181718_46	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0181718_46	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0181718	Yes	27,637	57	72	1
UHGV-0213343	No	26,845	57	70	1