Plasmodium falciparum 3D7

Plasmodium falciparum 3D7 (GCA_000002765.3)

Overview

Organism information
Name	Plasmodium falciparum 3D7
Taxonomy ID	36329 View in NCBI
Taxonomic Group	Eukaryota (Protozoa)

Genome details
Assembly Accession	GCA_000002765.3 View in NCBI
Assembly Name	GCA_000002765
Sequencing Level	Complete Genome (haploid)
Source Database	GENBANK

Available G-quadruplexes
Total	1,708	By regular expression	848	By G4Hunter	860

G-quadruplexes

Identified by regular expression:

For reasons of efficiency, the top 50 largest G-quadruplexes are listed. For a full list, click here.

Chromosome/Contig Name	Start	End	Length	Sequence
LN999944.1	1,584,595	1,584,632	37	GGGTGAGGGGGGGGGGGGGGGAAAGTGGGGGGGCGGG
LN999947.1	2,215,628	2,215,659	31	CCCTGTCCCTGGAGTTCCCCCTGTTCGTCCC
LN999943.1	698,359	698,389	30	CCCATTTTGCCCATTTTGCCCATTTTGCCC
LN999943.1	698,395	698,425	30	CCCATTTTGCCCATTTTGCCCATTTTGCCC
LN999943.1	698,431	698,461	30	CCCATTTTGCCCATTTTGCCCATTTTGCCC
AL844507.3	46,916	46,946	30	CCCCAAAACCTCCCAACCCCCCTCAGCCCC
AL844507.3	1,465,088	1,465,117	29	CCCCATGTTTTCCCTGCCCAAAAACGCCC
LN999945.1	7,381	7,410	29	GGGCGTTTTTGGGCAGGGAAAACATGGGG
AL844508.2	5,802	5,831	29	GGGCGTTTTTGGGCAGGGAAAACATGGGG
AL844509.3	7,329	7,358	29	GGGCGTTTTTGGGCAGGGAAAACATGGGG
AL844503.2	1,194,294	1,194,323	29	CCCCATGTTTTCCCTGCCCAAAAACGCCC
LN999947.1	6,701	6,730	29	GGGCGTTTTTGGGTAGGGAAAACATGGGG
AL844504.2	6,894	6,923	29	GGGCGTTTTTGGGCAGGGAAAACATGGGG
AL844505.2	1,408,326	1,408,355	29	CCCCATGTTTTCCCTACCCAAAAACGCCC
AL844505.2	1,410,394	1,410,423	29	CCCCATATTTTCCCTACCCAAAAACGCCC
AL844502.2	9,593	9,622	29	GGGCGTTTTTGGGCAGGGAAAACATGGGG
LN999943.1	7,875	7,904	29	GGGCGTTTTTGGGCAGGGAAAACATGGGG
LN999944.1	1,584,636	1,584,665	29	GGGCGGGGGGAGGGGGAAGGGGGGGGGGG
AL844506.3	6,686	6,715	29	GGGCGTTTTTGGGTAGGGAAAACATGGGG
AL844507.3	31,729	31,758	29	GGGGGGGGTTGTACGGGTGGAGGCGGGGG
AL844509.3	496	522	26	CCCTAAACCCTGAACCCCCTAAACCC
AL844502.2	399	425	26	CCCTAAAACCCTGAAACCCTAAACCC
AL844502.2	626	652	26	CCCTGAACCCTAAAACCCTGAAACCC
AL844502.2	684	710	26	CCCTGAAACCCTGAAACCCTAAACCC
LN999946.1	3,291,627	3,291,653	26	GGGTTTCAGGGTTTAGGGTTTTAGGG
LN999947.1	273	299	26	CCCAGAACCCTAAAAACCCTGAACCC
AL844502.2	1,283	1,309	26	CCCTGAACCCTAAACCCTTAAACCCC
AL844504.2	61	87	26	CCCTAAACCCTGAACCCCCTAAACCC
LN999947.1	985,247	985,273	26	GGGGTTGGGTTAGGGTCTATGAGGGG
AL844509.3	2,924,151	2,924,177	26	GGGTGTTAGGGGTTTAGGGTTCAGGG
AL844502.2	2,181	2,207	26	CCCTGGAAACCCTGAACCCTAAACCC
AL844506.3	1,126	1,152	26	CCCTGAGAACCCTAAACCCTGAACCC
LN999944.1	1,687,447	1,687,473	26	GGGTTTAGGGTTTAGGGTTTTCAGGG
AL844507.3	1,472,574	1,472,599	25	GGGTTTTAGGGTTTAGGGTTTAGGG
AL844502.2	1,066,281	1,066,306	25	GGGTTTCAGGGTTTAGGGTTTAGGG
LN999945.1	2,037,560	2,037,585	25	GGGTTCAGGGTTTCAGGGTTTAGGG
LN999945.1	2,037,623	2,037,648	25	GGGTTCAGGGTTTTAGGGTTCAGGG
AL844508.2	134	159	25	CCCTGAAACCCTAAACCCTAAACCC
LN999945.1	2,037,743	2,037,768	25	GGGTTCAGGGTTTTAGGGTTCAGGG
AL844508.2	253	278	25	CCCTAAACCCTAAACCCATGAACCC
LN999945.1	2,037,779	2,037,804	25	GGGTTTCAGGGTTTAGGGTTCAGGG
LN999945.1	2,038,063	2,038,088	25	GGGTTCAGGGTTTAGGGTTTCAGGG
LN999945.1	2,038,125	2,038,150	25	GGGTTTAGGGTTCAGGGTTTCAGGG
AL844502.2	1,066,975	1,067,000	25	GGGTTTAGGGTTCTAGGGTTTAGGG
LN999946.1	32	57	25	CCCCTAAACCCTAAACCCTGAACCC
AL844502.2	1,067,365	1,067,390	25	GGGTTCAGGGTTTTAGGGTTCAGGG
AL844501.2	640,404	640,429	25	GGGGTTTAGGGTTTAGGGTTTAGGG
AL844501.2	640,433	640,458	25	GGGTTTAGGGTTCATGGGTTTAGGG
LN999946.1	414	439	25	CCCTGAAACCCTGAACCCTAAACCC
AL844509.3	52	77	25	CCCTAAACCCTGAAACCCTAAACCC

Identified by G4Hunter:

For reasons of efficiency, the top 50 largest G-quadruplexes are listed. For a full list, click here.

Chromosome/Contig Name	Start	End	Length	Score	Sequence
LN999947.1	1,478,855	1,479,010	155	-1.65	CATTCTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTT CTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTTCTCATTA
LN999944.1	1,584,556	1,584,697	141	2.26	GTAGTTTAAAGGGGCCGGGTTGGGGGGTTGGTTGAGGAAGGGTGAGGGGGGGGGGGGGGGAAAGTGGGGGGGCGGGAGGTGGGCGGGGGGAGGGGGAAGG GGGGGGGGGCGAGGGGGGTTGGGGGGTGTGTGGTTTTAAAG
AL844507.3	46,911	46,969	58	-1.62	GATGGCCCCAAAACCTCCCAACCCCCCTCAGCCCCTAGTGATACCCCCACCACCCTTG
AL844506.3	126,374	126,425	51	-1.57	CCCTCTGCCTGTCCCCCTGCCTGTCCCCCTGCCTGTCCCCCTGCCTGTCTC
AL844507.3	31,711	31,761	50	1.6	TTGAAGGGTTGGTTCGCAGGGGGGGGTTGTACGGGTGGAGGCGGGGGTAC
LN999946.1	1,235,020	1,235,070	50	-1.54	AATTCCTCTTCTCCTTCCCCTTCCCCTTCCCCTTCATCACCTTCCttccc
AL844504.2	1,134,876	1,134,925	49	1.51	tttttttttttttttggggggGGGGGGGGAAGGGGGCTCTTAAAAATTA
AL844509.3	35,960	36,009	49	1.57	ACATGAGGGCGGTTTTAAGGGGGGGTAAAGGTGGTGGAGGAGGGGGTAG
AL844502.2	223,124	223,172	48	-1.48	TTATAATTAAGCCCCCCTTTACCCCTCCccccccaaaaaaaaaaaaaa
LN999945.1	934,681	934,727	46	1.37	attttttttttttttggggggGGGGGGGGTTGGAAGATTgagtttt
AL844502.2	1,034,706	1,034,752	46	1.26	TCACCACTAGCGCGGGGGGAGGGGGTTTGGGAGGCGGTGGAGGCCT
AL844507.3	1,353,297	1,353,342	45	-1.29	tatttatttcaAAACACCCCCCCCccccccaaaaaaaaaaaaaaa
AL844508.2	340,602	340,647	45	-1.4	ttttttttttttttcccccccCCTCCCCACTTCCTCAACCTTCAT
AL844509.3	458,614	458,659	45	-1.47	TACACCCAAATATTTTCCCCCTCCCccccccaaaaaaaaaaaaaa
LN999943.1	700,319	700,363	44	1.36	CATATGGAAAAGAAAGGGGGAGGgggggggaaaaaaaaaaaaaa
LN999947.1	1,360,354	1,360,398	44	1.39	ttgtttttttttttggggggGTGGGGGGAAGGACGAAGGAGCAT
LN999947.1	1,360,354	1,360,398	44	1.39	ttgtttttttttttggggggGTGGGGGGAAGGACGAAGGAGCAT
AL844502.2	372,570	372,614	44	-1.23	aatattttttttcactcCCCCCCCCCCCTacctttaataatata
AL844509.3	81,556	81,600	44	-1.3	attaattcaaaaaatCCCCCCCCccccccaaaaaaaaaaaaaat
AL844509.3	360,123	360,167	44	-1.25	acatattttcttttaaccCCCCCCCCACCCTTACATTCTCACAT
LN999945.1	443,839	443,882	43	1.16	tttttttttttttggaggGGGGGGGAAGGTTGAAGGTGCTTGA
AL844506.3	710,614	710,657	43	-1.19	atttttattatcacccTTCCCCCCcccttcttcttcttcttct
LN999946.1	1,376	1,419	43	-1.4	gaaccctgaaccctaaacccgcCCCCCCTACTTCCGTTACCTT
AL844508.2	369,180	369,223	43	1.28	GTTCTTTTGTTTCTGGGGGGGGGTGGGGGAAAtaatcatttta
AL844503.2	151,525	151,568	43	-1.21	TTTACTATTAACCTCCTCCCCCccccccaaaaaaaaaaaaaag
AL844504.2	723,610	723,652	42	1.14	ttttttttgataaatgGGGGGGGGGGgaaattacaaatataa
AL844505.2	91,348	91,390	42	1.1	tttttttttttttttggggggGGGGATGGGATGTAATAATCC
LN999944.1	1,647,483	1,647,525	42	-1.21	TCCTCTTTTGGTGACCCCCCCTCCCCGTCCGTGTCTTCCTTC
AL844505.2	1,361,184	1,361,226	42	1.29	GTCGACGAAGCGACGGGGGCGGGGGGGGACGACCTAGTGGTG
LN999945.1	720,470	720,512	42	1.12	aataaaaaaatcaaaGGGGGgggggggaaaaaaaaaaaaaat
AL844506.3	1,003,654	1,003,696	42	1.21	tAAACTTGTTGGAGGAGGGGGAGGGGGAATATGTGAAAAATG
AL844507.3	1,276,252	1,276,294	42	1.36	GGGTGAGTGGATGAATGGGTGTGGGGGGTACTAGGGTACATT
LN999947.1	1,697,592	1,697,634	42	-1.55	TTCCTCCACCGCCTCCCCGATCACCCCCTATAGTTCCCCTGA
AL844508.2	1,085,420	1,085,462	42	-1.12	TCTGAAATGAATACACCCCCCCCCcccatatgtatatatatt
AL844502.2	178,261	178,303	42	-1.29	aaccTGTTTTACACACCCCCACCCccctctttttttaaaacc
AL844502.2	738,164	738,206	42	1.26	ttttttttttttttggggggTGGGGGGAAGGAAGAAATATTT
AL844503.2	54,645	54,687	42	1.45	CACAGGGGTTTGGTGTGGGGTTCGGGGGATAGGTACATGGTT
AL844509.3	2,917,326	2,917,368	42	-1.1	ACATACCACTATATTTACCCCCCCCCCTTAAGCTAAAGAAAC
LN999943.1	422,449	422,490	41	-1.1	ttcttttttttttttcccccccCCCCTCCTTTTATGGTTTA
LN999943.1	669,835	669,876	41	1.15	ATTCATTTGAAGGAAGGGGGGGAGGGGCCATaacaaaggaa
AL844506.3	133,935	133,976	41	-1.02	taacacttttttttttccccccccccttttatttttttttt
LN999945.1	748,908	748,949	41	-1.05	tttgttaatttttttccccCCCCCCCAATCTTTTTAAATTG
LN999947.1	1,201,093	1,201,134	41	1.15	acttaaaaaaaaaaggggggggaggggaaaaaaaaaaaaaa
AL844508.2	22,553	22,594	41	1.32	GGAGGAAGGCACGGAAGGGACGGGGGAGGTGGAGGAAAACG
LN999947.1	1,593,643	1,593,684	41	1.29	taaaaagattaCAGGGGGGGAAGGGGAATGTAGGGTTTtac
AL844508.2	500,022	500,063	41	-1.1	tattttgttttctttcCCCCCCCCCCTTTTTtactaaatta
AL844502.2	40,451	40,492	41	-1.71	GCCCCAACGAATCCCCCAACTCCAAACCCCCCTCATCCACT
AL844502.2	848,013	848,054	41	1.1	aaaaaaaacaaaatgggGGGGAGGGGGAAACaaaacatatt
AL844509.3	38,003	38,044	41	1.32	CTGTTTGTGTGTCGGGGTTTGGGGGTGGGGAACATGTATTT
AL844503.2	110,417	110,458	41	-1.15	TGTAGTGCATTTTTCCCCCCCTCCCCCTCTCTCTCGGTCTt