| Organism information | |
|---|---|
| Name | Plasmodium falciparum 3D7 |
| Taxonomy ID | 36329 View in NCBI |
| Taxonomic Group | Eukaryota (Protozoa) |
| Genome details | |
|---|---|
| Assembly Accession | GCA_000002765.3 View in NCBI |
| Assembly Name | GCA_000002765 |
| Sequencing Level | Complete Genome (haploid) |
| Source Database | GENBANK |
| Available G-quadruplexes | |||||
|---|---|---|---|---|---|
| Total | 1,708 | By regular expression | 848 | By G4Hunter | 860 |
| Source | Chromosome/Contig Name | Start | End | Length | Sequence |
|---|---|---|---|---|---|
| Genomic | LN999944.1 | 1,584,595 | 1,584,632 | 37 | GGGTGAGGGGGGGGGGGGGGGAAAGTGGGGGGGCGGG |
| CDS | lcl|LN999947.1_cds_CZT99697.1_4005 | 749 | 780 | 31 | CCCTGTCCCTGGAGTTCCCCCTGTTCGTCCC |
| Genomic | LN999947.1 | 2,215,628 | 2,215,659 | 31 | CCCTGTCCCTGGAGTTCCCCCTGTTCGTCCC |
| CDS | lcl|LN999943.1_cds_CZT98182.1_319 | 1,091 | 1,121 | 30 | GGGCAAAATGGGCAAAATGGGCAAAATGGG |
| CDS | lcl|LN999943.1_cds_CZT98182.1_319 | 1,127 | 1,157 | 30 | GGGCAAAATGGGCAAAATGGGCAAAATGGG |
| CDS | lcl|LN999943.1_cds_CZT98182.1_319 | 1,163 | 1,193 | 30 | GGGCAAAATGGGCAAAATGGGCAAAATGGG |
| CDS | lcl|AL844507.3_cds_CAD51361.1_1846 | 5,969 | 5,999 | 30 | CCCCAAAACCTCCCAACCCCCCTCAGCCCC |
| Genomic | AL844507.3 | 46,916 | 46,946 | 30 | CCCCAAAACCTCCCAACCCCCCTCAGCCCC |
| Genomic | LN999943.1 | 698,359 | 698,389 | 30 | CCCATTTTGCCCATTTTGCCCATTTTGCCC |
| Genomic | LN999943.1 | 698,395 | 698,425 | 30 | CCCATTTTGCCCATTTTGCCCATTTTGCCC |
| Genomic | LN999943.1 | 698,431 | 698,461 | 30 | CCCATTTTGCCCATTTTGCCCATTTTGCCC |
| Genomic | AL844509.3 | 7,329 | 7,358 | 29 | GGGCGTTTTTGGGCAGGGAAAACATGGGG |
| Genomic | AL844506.3 | 6,686 | 6,715 | 29 | GGGCGTTTTTGGGTAGGGAAAACATGGGG |
| CDS | lcl|AL844507.3_cds_CAD51362.1_1845 | 7,275 | 7,304 | 29 | CCCCCGCCTCCACCCGTACAACCCCCCCC |
| Genomic | AL844507.3 | 1,465,088 | 1,465,117 | 29 | CCCCATGTTTTCCCTGCCCAAAAACGCCC |
| Genomic | AL844507.3 | 31,729 | 31,758 | 29 | GGGGGGGGTTGTACGGGTGGAGGCGGGGG |
| Genomic | AL844508.2 | 5,802 | 5,831 | 29 | GGGCGTTTTTGGGCAGGGAAAACATGGGG |
| Genomic | LN999943.1 | 7,875 | 7,904 | 29 | GGGCGTTTTTGGGCAGGGAAAACATGGGG |
| Genomic | AL844503.2 | 1,194,294 | 1,194,323 | 29 | CCCCATGTTTTCCCTGCCCAAAAACGCCC |
| Genomic | LN999944.1 | 1,584,636 | 1,584,665 | 29 | GGGCGGGGGGAGGGGGAAGGGGGGGGGGG |
| Genomic | AL844504.2 | 6,894 | 6,923 | 29 | GGGCGTTTTTGGGCAGGGAAAACATGGGG |
| Genomic | LN999945.1 | 7,381 | 7,410 | 29 | GGGCGTTTTTGGGCAGGGAAAACATGGGG |
| Genomic | AL844505.2 | 1,408,326 | 1,408,355 | 29 | CCCCATGTTTTCCCTACCCAAAAACGCCC |
| Genomic | AL844505.2 | 1,410,394 | 1,410,423 | 29 | CCCCATATTTTCCCTACCCAAAAACGCCC |
| Genomic | AL844502.2 | 9,593 | 9,622 | 29 | GGGCGTTTTTGGGCAGGGAAAACATGGGG |
| Genomic | LN999947.1 | 6,701 | 6,730 | 29 | GGGCGTTTTTGGGTAGGGAAAACATGGGG |
| Genomic | AL844506.3 | 1,126 | 1,152 | 26 | CCCTGAGAACCCTAAACCCTGAACCC |
| Genomic | AL844509.3 | 2,924,151 | 2,924,177 | 26 | GGGTGTTAGGGGTTTAGGGTTCAGGG |
| Genomic | LN999946.1 | 3,291,627 | 3,291,653 | 26 | GGGTTTCAGGGTTTAGGGTTTTAGGG |
| Genomic | AL844502.2 | 399 | 425 | 26 | CCCTAAAACCCTGAAACCCTAAACCC |
| Genomic | AL844502.2 | 626 | 652 | 26 | CCCTGAACCCTAAAACCCTGAAACCC |
| Genomic | AL844502.2 | 684 | 710 | 26 | CCCTGAAACCCTGAAACCCTAAACCC |
| Genomic | AL844502.2 | 1,283 | 1,309 | 26 | CCCTGAACCCTAAACCCTTAAACCCC |
| Genomic | LN999944.1 | 1,687,447 | 1,687,473 | 26 | GGGTTTAGGGTTTAGGGTTTTCAGGG |
| Genomic | AL844504.2 | 61 | 87 | 26 | CCCTAAACCCTGAACCCCCTAAACCC |
| Genomic | AL844502.2 | 2,181 | 2,207 | 26 | CCCTGGAAACCCTGAACCCTAAACCC |
| Genomic | LN999947.1 | 273 | 299 | 26 | CCCAGAACCCTAAAAACCCTGAACCC |
| Genomic | LN999947.1 | 985,247 | 985,273 | 26 | GGGGTTGGGTTAGGGTCTATGAGGGG |
| Genomic | AL844509.3 | 496 | 522 | 26 | CCCTAAACCCTGAACCCCCTAAACCC |
| Genomic | AL844509.3 | 2,922,400 | 2,922,425 | 25 | GGGTTCAAGGGTTTAGGGTTCAGGG |
| Genomic | AL844502.2 | 1,064,463 | 1,064,488 | 25 | GGGTTCTAGGGTTTAGGGTTTAGGG |
| Genomic | AL844509.3 | 2,922,997 | 2,923,022 | 25 | GGGTTCAGGGTTTAGGGTTTTAGGG |
| Genomic | AL844509.3 | 2,923,165 | 2,923,190 | 25 | GGGTTCAGGGTTTCAGGGTTTAGGG |
| Genomic | AL844502.2 | 1,064,988 | 1,065,013 | 25 | GGGTTTAGGGTTTAGGGTTTCAGGG |
| Genomic | AL844509.3 | 2,923,428 | 2,923,453 | 25 | GGGTTCCCGGGTTTAGGGTTTAGGG |
| Genomic | AL844506.3 | 1,414 | 1,439 | 25 | CCCTAAACCCTAAACCCTGGAACCC |
| Genomic | AL844502.2 | 1,065,101 | 1,065,126 | 25 | GGGTTCAGGGTTTAGGGTTTCAGGG |
| Genomic | AL844502.2 | 1,065,270 | 1,065,295 | 25 | GGGTTCCAGGGTTTAGGGTTCAGGG |
| Genomic | AL844509.3 | 2,924,095 | 2,924,120 | 25 | GGGTTCAGGGTCTTAGGGTTTAGGG |
| CDS | lcl|AL844507.3_cds_CAD51361.1_1846 | 4,813 | 4,838 | 25 | CCCTAAACCCACCACCCGACAGCCC |
| Source | Chromosome/Contig Name | Start | End | Length | Score | Sequence |
|---|---|---|---|---|---|---|
| Genomic | LN999947.1 | 1,478,855 | 1,479,010 | 155 | -1.65 |
CATTCTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTT CTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTTCTCCATCCCCTTCTCATTA |
| CDS | lcl|LN999947.1_cds_CZT99513.1_3820 | 1,004 | 1,159 | 155 | 1.65 |
TAATGAGAAGGGGATGGAGAAGGGGATGGAGAAGGGGATGGAGAAGGGGATGGAGAAGGGGATGGAGAAGGGGATGGAGAAGGGGATGGAGAAGGGGATG GAGAAGGGGATGGAGAAGGGGATGGAGAAGGGGATGGAGAAGGGGATGGAGAATG |
| Genomic | LN999944.1 | 1,584,556 | 1,584,697 | 141 | 2.26 |
GTAGTTTAAAGGGGCCGGGTTGGGGGGTTGGTTGAGGAAGGGTGAGGGGGGGGGGGGGGGAAAGTGGGGGGGCGGGAGGTGGGCGGGGGGAGGGGGAAGG GGGGGGGGGCGAGGGGGGTTGGGGGGTGTGTGGTTTTAAAG |
| CDS | lcl|AL844507.3_cds_CAD51361.1_1846 | 5,964 | 6,022 | 58 | -1.62 | GATGGCCCCAAAACCTCCCAACCCCCCTCAGCCCCTAGTGATACCCCCACCACCCTTG |
| Genomic | AL844507.3 | 46,911 | 46,969 | 58 | -1.62 | GATGGCCCCAAAACCTCCCAACCCCCCTCAGCCCCTAGTGATACCCCCACCACCCTTG |
| CDS | lcl|AL844506.3_cds_CAD50803.1_1565 | 710 | 761 | 51 | 1.57 | GAGACAGGCAGGGGGACAGGCAGGGGGACAGGCAGGGGGACAGGCAGAGGG |
| Genomic | AL844506.3 | 126,374 | 126,425 | 51 | -1.57 | CCCTCTGCCTGTCCCCCTGCCTGTCCCCCTGCCTGTCCCCCTGCCTGTCTC |
| CDS | lcl|AL844507.3_cds_CAD51362.1_1845 | 7,272 | 7,322 | 50 | -1.6 | GTACCCCCGCCTCCACCCGTACAACCCCCCCCTGCGAACCAACCCTTCAA |
| CDS | lcl|LN999946.1_cds_CZU00011.1_5028 | 2,055 | 2,105 | 50 | 1.54 | GGGAAGGAAGGTGATGAAGGGGAAGGGGAAGGGGAAGGAGAAGAGGAATT |
| Genomic | AL844507.3 | 31,711 | 31,761 | 50 | 1.6 | TTGAAGGGTTGGTTCGCAGGGGGGGGTTGTACGGGTGGAGGCGGGGGTAC |
| Genomic | LN999946.1 | 1,235,020 | 1,235,070 | 50 | -1.54 | AATTCCTCTTCTCCTTCCCCTTCCCCTTCCCCTTCATCACCTTCCttccc |
| Genomic | AL844504.2 | 1,134,876 | 1,134,925 | 49 | 1.51 | tttttttttttttttggggggGGGGGGGGAAGGGGGCTCTTAAAAATTA |
| Genomic | AL844509.3 | 35,960 | 36,009 | 49 | 1.57 | ACATGAGGGCGGTTTTAAGGGGGGGTAAAGGTGGTGGAGGAGGGGGTAG |
| CDS | lcl|AL844509.3_cds_CAD52145.1_4016 | 8,733 | 8,782 | 49 | -1.57 | CTACCCCCTCCTCCACCACCTTTACCCCCCCTTAAAACCGCCCTCATGT |
| Genomic | AL844502.2 | 223,124 | 223,172 | 48 | -1.48 | TTATAATTAAGCCCCCCTTTACCCCTCCccccccaaaaaaaaaaaaaa |
| Genomic | AL844502.2 | 1,034,706 | 1,034,752 | 46 | 1.26 | TCACCACTAGCGCGGGGGGAGGGGGTTTGGGAGGCGGTGGAGGCCT |
| Genomic | LN999945.1 | 934,681 | 934,727 | 46 | 1.37 | attttttttttttttggggggGGGGGGGGTTGGAAGATTgagtttt |
| Genomic | AL844508.2 | 340,602 | 340,647 | 45 | -1.4 | ttttttttttttttcccccccCCTCCCCACTTCCTCAACCTTCAT |
| CDS | lcl|AL844508.2_cds_CAD51754.1_2246 | 1,761 | 1,806 | 45 | 1.4 | ATGAAGGTTGAGGAAGTGGGGAGGGGGGGGGAAAAAAAAAAAAAA |
| Genomic | AL844509.3 | 458,614 | 458,659 | 45 | -1.47 | TACACCCAAATATTTTCCCCCTCCCccccccaaaaaaaaaaaaaa |
| CDS | lcl|AL844502.2_cds_CAB39061.1_628 | 3,503 | 3,548 | 45 | -1.29 | GGCCTCCACCGCCTCCCAAACCCCCTCCCCCCGCGCTAGTGGTGA |
| Genomic | AL844507.3 | 1,353,297 | 1,353,342 | 45 | -1.29 | tatttatttcaAAACACCCCCCCCccccccaaaaaaaaaaaaaaa |
| Genomic | LN999943.1 | 700,319 | 700,363 | 44 | 1.36 | CATATGGAAAAGAAAGGGGGAGGgggggggaaaaaaaaaaaaaa |
| Genomic | AL844502.2 | 372,570 | 372,614 | 44 | -1.23 | aatattttttttcactcCCCCCCCCCCCTacctttaataatata |
| Genomic | LN999947.1 | 1,360,354 | 1,360,398 | 44 | 1.39 | ttgtttttttttttggggggGTGGGGGGAAGGACGAAGGAGCAT |
| Genomic | AL844509.3 | 81,556 | 81,600 | 44 | -1.3 | attaattcaaaaaatCCCCCCCCccccccaaaaaaaaaaaaaat |
| Genomic | AL844509.3 | 360,123 | 360,167 | 44 | -1.25 | acatattttcttttaaccCCCCCCCCACCCTTACATTCTCACAT |
| Genomic | AL844508.2 | 369,180 | 369,223 | 43 | 1.28 | GTTCTTTTGTTTCTGGGGGGGGGTGGGGGAAAtaatcatttta |
| CDS | lcl|AL844506.3_cds_CAD50909.1_1683 | 251 | 294 | 43 | 1.19 | AGAAGAAGAAGAAGAAGGGGGGGGGAAGGGTGATAATAAAAAT |
| Genomic | AL844503.2 | 151,525 | 151,568 | 43 | -1.21 | TTTACTATTAACCTCCTCCCCCccccccaaaaaaaaaaaaaag |
| Genomic | LN999945.1 | 443,839 | 443,882 | 43 | 1.16 | tttttttttttttggaggGGGGGGGAAGGTTGAAGGTGCTTGA |
| Genomic | AL844506.3 | 710,614 | 710,657 | 43 | -1.19 | atttttattatcacccTTCCCCCCcccttcttcttcttcttct |
| Genomic | LN999946.1 | 1,376 | 1,419 | 43 | -1.4 | gaaccctgaaccctaaacccgcCCCCCCTACTTCCGTTACCTT |
| CDS | lcl|AL844505.2_cds_CAG25137.1_1532 | 5,204 | 5,246 | 42 | -1.29 | CACCACTAGGTCGTCCCCCCCCGCCCCCGTCGCTTCGTCGAC |
| RNA | lcl|AL844507.3_ncrna_PF3D7_0829900_86 | 628 | 670 | 42 | 1.36 | GGGTGAGTGGATGAATGGGTGTGGGGGGTACTAGGGTACATT |
| Genomic | AL844508.2 | 1,085,420 | 1,085,462 | 42 | -1.12 | TCTGAAATGAATACACCCCCCCCCcccatatgtatatatatt |
| Genomic | AL844502.2 | 178,261 | 178,303 | 42 | -1.29 | aaccTGTTTTACACACCCCCACCCccctctttttttaaaacc |
| Genomic | AL844502.2 | 738,164 | 738,206 | 42 | 1.26 | ttttttttttttttggggggTGGGGGGAAGGAAGAAATATTT |
| CDS | lcl|AL844506.3_cds_CAD50986.1_1760 | 1,050 | 1,092 | 42 | -1.21 | CATTTTTCACATATTCCCCCTCCCCCTCCTCCAACAAGTTTA |
| Genomic | AL844503.2 | 54,645 | 54,687 | 42 | 1.45 | CACAGGGGTTTGGTGTGGGGTTCGGGGGATAGGTACATGGTT |
| Genomic | LN999944.1 | 1,647,483 | 1,647,525 | 42 | -1.21 | TCCTCTTTTGGTGACCCCCCCTCCCCGTCCGTGTCTTCCTTC |
| Genomic | LN999945.1 | 720,470 | 720,512 | 42 | 1.12 | aataaaaaaatcaaaGGGGGgggggggaaaaaaaaaaaaaat |
| Genomic | AL844504.2 | 723,610 | 723,652 | 42 | 1.14 | ttttttttgataaatgGGGGGGGGGGgaaattacaaatataa |
| CDS | lcl|LN999944.1_cds_CZT98668.1_2978 | 2,423 | 2,465 | 42 | 1.21 | GAAGGAAGACACGGACGGGGAGGGGGGGTCACCAAAAGAGGA |
| Genomic | AL844505.2 | 91,348 | 91,390 | 42 | 1.1 | tttttttttttttttggggggGGGGATGGGATGTAATAATCC |
| Genomic | LN999947.1 | 1,697,592 | 1,697,634 | 42 | -1.55 | TTCCTCCACCGCCTCCCCGATCACCCCCTATAGTTCCCCTGA |
| Genomic | AL844505.2 | 1,361,184 | 1,361,226 | 42 | 1.29 | GTCGACGAAGCGACGGGGGCGGGGGGGGACGACCTAGTGGTG |
| CDS | lcl|LN999947.1_cds_CZT99562.1_3870 | 3,443 | 3,485 | 42 | -1.55 | TTCCTCCACCGCCTCCCCGATCACCCCCTATAGTTCCCCTGA |
| Genomic | AL844506.3 | 1,003,654 | 1,003,696 | 42 | 1.21 | tAAACTTGTTGGAGGAGGGGGAGGGGGAATATGTGAAAAATG |
| CDS | lcl|AL844503.2_cds_CAD49096.1_632 | 2,173 | 2,215 | 42 | -1.45 | AACCATGTACCTATCCCCCGAACCCCACACCAAACCCCTGTG |