Caenorhabditis elegans

Caenorhabditis elegans (GCA_000002985.3)

Overview

Organism information
Name	Caenorhabditis elegans
Taxonomy ID	6239 View in NCBI
Taxonomic Group	Eukaryota (Invertebrates)

Genome details
Assembly Accession	GCA_000002985.3 View in NCBI
Assembly Name	WBcel235
Sequencing Level	Complete Genome (haploid)
Source Database	GENBANK

Available G-quadruplexes
Total	23,824	By regular expression	3,008	By G4Hunter	20,816

G-quadruplexes

Identified by regular expression:

For reasons of efficiency, the top 50 largest G-quadruplexes are listed. For a full list, click here.

Source	Chromosome/Contig Name	Start	End	Length	Sequence
Genomic	BX284601.5	11,789,908	11,789,952	44	GGGGGGGGGGGGGGGGGCAGCTCGGGCTCGGGGAAAGCTCGGGG
Genomic	lcl\|BX284606.5_ncrna_CELE_R08B4.12_52151	56	99	43	GGGGGGGGGGGGGGGGGGCAAGCGGGCTTAAAAGGGGAGGGGG
Genomic	BX284601.5	14,138,006	14,138,049	43	CCCCCTGATACCCCCGGGTCCCCCTGATACCCCCCCCCCCCCC
Genomic	BX284606.5	11,126,688	11,126,731	43	GGGGGGGGGGGGGGGGGGCAAGCGGGCTTAAAAGGGGAGGGGG
Genomic	BX284601.5	11,526,608	11,526,650	42	CCCAACTTCCCCCCCCCCCCCCCCTGAAAATCCCGGCTTCCC
Genomic	lcl\|BX284601.5_mrna_CELE_F32B4.4_4289	2,195	2,237	42	CCCAACTTCCCCCCCCCCCCCCCCTGAAAATCCCGGCTTCCC
Genomic	BX284601.5	1,974,178	1,974,219	41	CCCCCCCCCCCCCCCCCCACATATCCCCTCCCCCATGTCCC
Genomic	BX284602.5	14,261,905	14,261,946	41	CCCTTTTCTCCCAGCCTCCCCCCCCCCCCCCCCGTCTCCCC
Genomic	BX284602.5	12,369,441	12,369,481	40	CCCATAGCCCCCCCCCCCCCCCATCCATTCCCATATTCCC
Genomic	BX284602.5	1,087,795	1,087,835	40	CCCCCCCCCCCCCCCCCCCCCCATTACACCCCTTAAGCCC
Genomic	BX284605.5	17,742,970	17,743,009	39	CCCCCTACAGTACCCCCTACAGTACCCCTACAGTACCCC
Genomic	BX284602.5	13,712,365	13,712,404	39	CCCTACAGTACCCCTCCCCCCCCCCCCCCCTACATTCCC
Genomic	BX284604.4	16,523,280	16,523,319	39	CCCCCTACAGTACCCCTACAGTACCCCTACAGTACCCCC
Genomic	BX284605.5	19,696,428	19,696,466	38	GGGGGTACTGTAGGGGTACTGTAGGGATGCGGTGGGGG
Genomic	BX284603.4	1,326,950	1,326,988	38	GGGGTACTGGGGGGGGGGGGGGGGGGGTACTGTAGGGG
Genomic	BX284604.4	16,523,080	16,523,118	38	CCCCTACAGTACCCCCTACAGTACCCCTGCAGTACCCC
Genomic	BX284604.4	16,523,235	16,523,273	38	CCCCTACAGTACCCCCTACAGTACCCCTACAGTACCCC
Genomic	BX284606.5	13,775,636	13,775,674	38	CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCTCTCCCC
Genomic	BX284603.4	12,839,195	12,839,232	37	GGGCAGAGATGGGAGAAGGGGGGGGGGGGGGGGGGGG
Genomic	BX284601.5	767,474	767,511	37	CCCCAAAAGTACCCCTACAAAACCCCTACAGTACCCC
Genomic	lcl\|BX284604.4_precursorrna_CELE_Y38F2AR.22_17560	9	46	37	GGGGGCTGGCTAGGGCTGCCTAGGGGGCTGGCTAGGG
Genomic	BX284601.5	11,266,674	11,266,711	37	GGGGTACTGTAGGGGTACTGTAGGGGTACTGTAGGGG
Genomic	BX284601.5	11,266,762	11,266,799	37	GGGGTACTGTAGGGGTACTGTAGGGGTACTGTAGGGG
Genomic	BX284601.5	11,619,567	11,619,604	37	GGGGTACTGTAGGGGTACTGTAGGGGTACTGTAGGGG
Genomic	BX284601.5	11,624,746	11,624,783	37	GGGGTAATGTAGGGGTAATGTAGGGGTTCTGTAGGGG
Genomic	BX284602.5	882,375	882,412	37	GGGGTACTGTAGGGGTACTGTAGGGGTACTGTAGGGG
Genomic	BX284601.5	13,723,394	13,723,431	37	GGGGTACATCAGGGTACTGTAGGGGGTACTGTAGGGG
Genomic	BX284601.5	13,723,460	13,723,497	37	GGGGTACTATAGGGGTACTGTAGGGGTACATCAGGGG
Genomic	BX284605.5	1,632,790	1,632,827	37	GGGGGGGGGGGGGGGGGGGAAATGGGAGAACGAGGGG
Genomic	BX284601.5	13,723,614	13,723,651	37	GGGGTACTATAGGGGTACTGTAGGGGTACATCAGGGG
Genomic	BX284605.5	3,186,016	3,186,053	37	GGGTCCTGGGGGGGGGAGGGGGGGGGGGGGGGGGGGG
Genomic	BX284601.5	11,623,773	11,623,810	37	CCCCTACAGTACCCCTACAGTACCCCTACAGTACCCC
Genomic	BX284605.5	1,031,480	1,031,517	37	CCCTACAGTACCCCTACAGTACCCCCACAGTACCCCC
Genomic	BX284606.5	6,756,261	6,756,298	37	GGGGGGGGGGGGGGGGGGGGTCTTAGGGAACTTTGGG
Genomic	BX284601.5	13,859,687	13,859,724	37	CCCCATTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Genomic	BX284602.5	3,132,826	3,132,863	37	CCCCTACAGTACCCCTACAGTACCCCAACAGTACCCC
Genomic	BX284602.5	3,133,165	3,133,202	37	CCCCTCCACTACCCCTCCAATACCCCTCCAATACCCC
Genomic	BX284603.4	1,634,123	1,634,160	37	GGGGTGCTGTAGGGGTAATGTAGGGGTAATGTAGGGG
Genomic	BX284602.5	3,133,275	3,133,312	37	CCCCTCCAATACCCCTCCAATACCCCTCCAATACCCC
Genomic	BX284602.5	3,133,373	3,133,410	37	CCCCAACAGTACCCCTACAGAGCCCCTACAGTACCCC
Genomic	BX284602.5	3,133,756	3,133,793	37	CCCCTCCACTACCCCTCCAATACCCCTCCAATACCCC
Genomic	BX284602.5	3,134,018	3,134,055	37	CCCCTACATAACCCCTTCAGTACCCCTACAGTACCCC
Genomic	BX284605.5	4,213,497	4,213,534	37	CCCCTACAGTACCCCTACAGTACCCCAACTGCACCCC
Genomic	BX284605.5	4,213,629	4,213,666	37	CCCCCTAAAGTACCCTACTGTACCCCTACAGTACCCC
Genomic	BX284604.4	16,523,169	16,523,206	37	CCCCTACAGTGCCCCTACAGAACCCCTACAGTACCCC
Genomic	BX284602.5	14,019,852	14,019,889	37	GGGGCGGTAGCGGGGCGGTAGCGGGGCTGTAGCGGGG
Genomic	BX284602.5	14,019,939	14,019,976	37	GGGGCGGTAGCGGGGCGGTAGCGGGGCGATAGCGGGG
Genomic	BX284602.5	14,019,983	14,020,020	37	GGGGCGATAGCGGGGCGGTAGCGGGGGCGGTAGCGGG
Genomic	BX284601.5	1,285,653	1,285,690	37	GGGGTACTGTAGGGGTACTGTAGGGGTACTGTAGGGG
Genomic	BX284601.5	1,286,246	1,286,283	37	GGGTACTCTAGGGGTACTGTAGGGGGTACTGAAGGGG

Identified by G4Hunter:

For reasons of efficiency, the top 50 largest G-quadruplexes are listed. For a full list, click here.

Source	Chromosome/Contig Name	Start	End	Length	Score	Sequence
RNA	lcl\|BX284605.5_mrna_CELE_ZK262.2_46520	1,178	1,291	113	-1.91	GATTCCAGACCCCAGACCCCAGACCCCAGACCCCAGACCCCAGACCCCAGACCCCAGACCCCAGACCCCAGACCCCAGACCCCAGACCCCAGACCCCAGA CCCCAGACACCAG
Genomic	BX284605.5	18,410,625	18,410,738	113	1.91	CTGGTGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCT GGGGTCTGGAATC
Genomic	BX284605.5	19,495,330	19,495,421	91	1.58	GAGAGCTTGGGGTGGGCCTTTGGGGTGGGCCTTTGGGGTGGGCCTTTGGGGTGGGCCTTTGGGGTGGGCCTTTGGGGTGGGCCTTTGGGGT
Genomic	BX284601.5	14,391,787	14,391,874	87	-1.95	ATACCGCCTCCCCCAATAcatacccccccccccccaaataTTCCATACCTCCCCCCCCTCCCCTACCCCTCACAATTATTTACCCCT
Genomic	BX284601.5	14,391,903	14,391,983	80	-1.93	TGTTCCCCTGTCCCCCACTGTGTCCCCCCAGTCCCCCACTGTCCCCCCTGTCCCCCACTGTGTCCCCCCAGGCCCCGACT
RNA	lcl\|BX284601.5_mrna_CELE_EAT-18_5236	44	124	80	-1.93	TGTTCCCCTGTCCCCCACTGTGTCCCCCCAGTCCCCCACTGTCCCCCCTGTCCCCCACTGTGTCCCCCCAGGCCCCGACT
Genomic	BX284602.5	3,133,154	3,133,229	75	-1.63	ctcctacgaTACCCCTCCACTACCCCTCCAATACCCCTCCAATACCCCTCCAATACCCCTCcaatacccctacag
Genomic	BX284602.5	3,133,745	3,133,820	75	-1.63	ctcctacgaTACCCCTCCACTACCCCTCCAATACCCCTCCAATACCCCTCCAATACCCCTCCAATACCCCTACAG
Genomic	BX284601.5	810,770	810,845	75	-1.61	TTAATCATATTatgaccccccccccccaccccTCTTAATTTCCTAATCCCCCTCCCCCTCCTCCTCATAATGACC
Genomic	BX284603.4	133,065	133,136	71	-1.49	AGGCTTATGTcagaccccccccccccccctcagAGATAGcagaccccccccccccccaactGGTTTGCATG
Genomic	BX284601.5	14,137,887	14,137,958	71	-1.75	CTTGTCCCCCTGATACCCCCTGGTCCCCCTGATACCCCCGGTCCCCCCTGATACCCCCTAGCCTCCCTGAT
Genomic	BX284601.5	14,150,282	14,150,351	69	1.59	ACAAATTACTAGgtaaggggggggggggtgtcTGGAAAGGAGGGGGGAGGGGGTATATGGAAAAGCGGA
Genomic	BX284604.4	1,260,874	1,260,943	69	1.57	cagtaggGCGATGGTGTGAGGGGGGCGGGAGTGTGGGGCGTGGTGTGGGGCGGGCGGGCGAGAGTGGCG
Genomic	BX284603.4	3,877,457	3,877,525	68	2.22	GAAAAGAACCgagaagggggggggggggggggggggggggggggggatagGTGCGCGGGGGGAAAATC
Genomic	BX284606.5	13,775,622	13,775,688	66	-2.2	CGATTCGACGCAAAccccacccccccccccccccccccccccccctctcccCTCATTTCACCAATC
Genomic	BX284606.5	15,511,948	15,512,013	65	2.11	TCGTATATCTTTGAggggtggggggggggggggggggggggggggggcagtCAAATGGTGTGGTG
Genomic	BX284601.5	13,859,674	13,859,739	65	-2.17	AACCCTAATAAATCCCcatttcccccccccccccccccccccccccccccattttCGTGTCAATT
Genomic	BX284601.5	1,974,163	1,974,228	65	-1.82	CAACGAATTTCagttccccccccccccccccccacatATCCCCTCCCCCATGTCCCTTTAAGCAA
Genomic	BX284604.4	1,647,354	1,647,418	64	2.11	ATGATAGATTGGAGgtggaggggggggggggggggggggggggggggagagaAACAGGAGGAAT
Genomic	BX284602.5	14,019,818	14,019,882	64	1.64	GTGGGCGGTAGCGGGGCGGTAGCGGGGCGGTAGCGGGGCGGTAGCGGGGCGGTAGCGGGGCTGT
Genomic	BX284602.5	14,019,905	14,019,969	64	1.64	GTGGGCGGTAGCGGGGCGGTAGCGGGGCGGTAGCGGGGCGGTAGCGGGGCGGTAGCGGGGCGAT
Genomic	BX284601.5	14,231,040	14,231,104	64	2.11	ATGGGGAAAGGAGGTACatggaggggggggggggggggggggggggggtgtcTTGGAAGAGCTC
Genomic	BX284603.4	1,908,531	1,908,595	64	-2.13	ccaaatttcactatttccccccccccccccccccccccccccccccccagaaaaatccgaattt
Genomic	BX284606.5	15,892,028	15,892,092	64	-1.95	CATATATTCCGtttctcccccccccccccccccctctcccccccccccgctGTTTCGATCCTTT
Genomic	BX284604.4	16,765,437	16,765,500	63	-2.08	TTCCATTCGACACCctcttccccccccccccccccccccccccccccaactTGACCTCCCGGG
RNA	lcl\|BX284606.5_ncrna_CELE_R08B4.12_52151	43	105	62	1.76	CACCGAAAATGACGGGGGGGGGGGGGGGGGGCAAGCGGGCTTAAAAGGGGAGGGGGTACACA
Genomic	BX284603.4	1,326,936	1,326,998	62	1.97	GTAGGGATGCTGTAGGGGtactgggggggggggggggggggtactgtaggggtgcTGTACGG
Genomic	BX284606.5	11,126,675	11,126,737	62	1.76	CACCGAAAAtgacggggggggggggggggggcaagcGGGCTTAAAAGGGGAGGGGGTACACA
Genomic	BX284605.5	4,503,401	4,503,462	61	-1.98	TTGAACTCCAATCcgttcccccccccccccccccccctcccccccCAAATCACAACTGTCG
Genomic	BX284605.5	3,186,007	3,186,068	61	2	TGAACTTTAGGGTCCTgggggggggaggggggggggggggggggggtgtcTAGACAGTCAG
Genomic	BX284604.4	3,292,292	3,292,353	61	2	gagcGAGTAGATAAgggatggggggggggggggggggggggggggggaaccGATTCGTATT
Genomic	BX284605.5	20,756,365	20,756,426	61	-2.02	ACGACGACGAggaacccccccccccccccccccccccccccccaccgtccacaaacacaca
Genomic	BX284605.5	18,674,497	18,674,557	60	-1.77	CTTAAGCGTGagttcccccccccccccacacCCCACCCCctcaaaaaacccaaaaccCAT
Genomic	BX284604.4	3,629,050	3,629,110	60	2.02	GAGAAAGTGACGCGGggagtgggggggggggggggggggggggggatttGCTACCGGTTG
Genomic	BX284601.5	545,847	545,907	60	-1.97	CCCCTTTTTCACCTCAAtcagccccccccccccccccccccccccaatttCATTTGACTG
Genomic	BX284606.5	15,487,399	15,487,459	60	-1.87	GTTTGCATTACCCCCTtgcctccccccccccccctccccaCCACCACCTCTATCTTCCCG
Genomic	BX284602.5	14,113,877	14,113,937	60	1.97	ATTAAGGGGGTTATGGTtagcggggggggggggggggggggagcgGGAGACAGGATTTTG
Genomic	BX284602.5	13,712,359	13,712,419	60	-1.97	CAGtgtccctacagtacccctccccccccccccccctacaTTCCCAACCCCTATACCTCC
Genomic	BX284605.5	6,452,905	6,452,965	60	-2	TTCAAATTGTAccttgcccccccccccccccccccccctcctccATGTCCCccaatcttc
Genomic	BX284606.5	16,398,922	16,398,982	60	2.02	ATGGGAAAAAGGTcagatgggggggggggggggggggtggggGGGTAAACTAGGAAATGT
RNA	lcl\|BX284605.5_mrna_CELE_T05H4.1_40847	1,180	1,240	60	-2	TTCAAATTGTACCTTGCCCCCCCCCCCCCCCCCCCCCCTCCTCCATGTCCCCCAATCTTC
Genomic	BX284602.5	13,915,820	13,915,880	60	-2.03	CATCATAACCCCTTGtatacccccccccccccccccccccccccaccacCGATTTGATTG
RNA	lcl\|BX284602.5_ncrna_CELE_C04A2.14_8394	135	194	59	1.61	GAGGAAAGGGATGAAGACGGGGTGGGGTGTGGGAGTGGCGTGGGGCGGGCGAGGGTCGT
Genomic	BX284601.5	14,312,677	14,312,736	59	-1.95	TTGAGCCATCACAgccacccccccccccccccccccccccggaAGTCAGCATCGCCCCC
Genomic	BX284606.5	5,140,365	5,140,424	59	-1.9	CATACTAGAGCCCAACACccccaccccccccccccccccctcttcCTACTGAGCACCCA
Genomic	BX284604.4	1,784,940	1,784,999	59	1.95	TGGGGTCCGACCTTatcggggggggggggggggggggggggaagggatgaatatttgaa
Genomic	BX284601.5	11,005,295	11,005,354	59	1.81	GGGGAAGAAAGAAGGGAAGCACgggggggagggggggggggggcatgTCAAAAGAGACG
Genomic	BX284603.4	5,029,517	5,029,576	59	-1.9	tttcatttagcttacacccccccccccccccccccccccccaacgTCCCAGacaatttc
Genomic	BX284602.5	1,087,780	1,087,839	59	-1.93	atcggtTCATCtcgtccccccccccccccccccccccattacACCCCTTAAGCCCACTC
RNA	lcl\|BX284601.5_mrna_CELE_F49B2.3_5212	686	745	59	-1.95	TTGAGCCATCACAGCCACCCCCCCCCCCCCCCCCCCCCCCGGAAGTCAGCATCGCCCCC