Caenorhabditis elegans

Caenorhabditis elegans (GCA_000002985.3)

Overview

Organism information
Name	Caenorhabditis elegans
Taxonomy ID	6239 View in NCBI
Taxonomic Group	Eukaryota (Invertebrates)

Genome details
Assembly Accession	GCA_000002985.3 View in NCBI
Assembly Name	WBcel235
Sequencing Level	Complete Genome (haploid)
Source Database	GENBANK

Available G-quadruplexes
Total	23,824	By regular expression	3,008	By G4Hunter	20,816

G-quadruplexes

Identified by regular expression:

For reasons of efficiency, the top 50 largest G-quadruplexes are listed. For a full list, click here.

Chromosome/Contig Name	Start	End	Length	Sequence
BX284601.5	11,789,908	11,789,952	44	GGGGGGGGGGGGGGGGGCAGCTCGGGCTCGGGGAAAGCTCGGGG
BX284606.5	11,126,688	11,126,731	43	GGGGGGGGGGGGGGGGGGCAAGCGGGCTTAAAAGGGGAGGGGG
BX284601.5	14,138,006	14,138,049	43	CCCCCTGATACCCCCGGGTCCCCCTGATACCCCCCCCCCCCCC
BX284601.5	11,526,608	11,526,650	42	CCCAACTTCCCCCCCCCCCCCCCCTGAAAATCCCGGCTTCCC
BX284602.5	14,261,905	14,261,946	41	CCCTTTTCTCCCAGCCTCCCCCCCCCCCCCCCCGTCTCCCC
BX284601.5	1,974,178	1,974,219	41	CCCCCCCCCCCCCCCCCCACATATCCCCTCCCCCATGTCCC
BX284602.5	1,087,795	1,087,835	40	CCCCCCCCCCCCCCCCCCCCCCATTACACCCCTTAAGCCC
BX284602.5	12,369,441	12,369,481	40	CCCATAGCCCCCCCCCCCCCCCATCCATTCCCATATTCCC
BX284602.5	13,712,365	13,712,404	39	CCCTACAGTACCCCTCCCCCCCCCCCCCCCTACATTCCC
BX284605.5	17,742,970	17,743,009	39	CCCCCTACAGTACCCCCTACAGTACCCCTACAGTACCCC
BX284604.4	16,523,280	16,523,319	39	CCCCCTACAGTACCCCTACAGTACCCCTACAGTACCCCC
BX284606.5	13,775,636	13,775,674	38	CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCTCTCCCC
BX284603.4	1,326,950	1,326,988	38	GGGGTACTGGGGGGGGGGGGGGGGGGGTACTGTAGGGG
BX284603.4	1,326,950	1,326,988	38	GGGGTACTGGGGGGGGGGGGGGGGGGGTACTGTAGGGG
BX284605.5	19,696,428	19,696,466	38	GGGGGTACTGTAGGGGTACTGTAGGGATGCGGTGGGGG
BX284604.4	16,523,080	16,523,118	38	CCCCTACAGTACCCCCTACAGTACCCCTGCAGTACCCC
BX284604.4	16,523,235	16,523,273	38	CCCCTACAGTACCCCCTACAGTACCCCTACAGTACCCC
BX284602.5	882,375	882,412	37	GGGGTACTGTAGGGGTACTGTAGGGGTACTGTAGGGG
BX284605.5	1,031,480	1,031,517	37	CCCTACAGTACCCCTACAGTACCCCCACAGTACCCCC
BX284605.5	1,632,790	1,632,827	37	GGGGGGGGGGGGGGGGGGGAAATGGGAGAACGAGGGG
BX284602.5	14,019,852	14,019,889	37	GGGGCGGTAGCGGGGCGGTAGCGGGGCTGTAGCGGGG
BX284602.5	14,019,939	14,019,976	37	GGGGCGGTAGCGGGGCGGTAGCGGGGCGATAGCGGGG
BX284602.5	14,019,983	14,020,020	37	GGGGCGATAGCGGGGCGGTAGCGGGGGCGGTAGCGGG
BX284601.5	11,266,674	11,266,711	37	GGGGTACTGTAGGGGTACTGTAGGGGTACTGTAGGGG
BX284601.5	11,266,762	11,266,799	37	GGGGTACTGTAGGGGTACTGTAGGGGTACTGTAGGGG
BX284602.5	3,132,826	3,132,863	37	CCCCTACAGTACCCCTACAGTACCCCAACAGTACCCC
BX284602.5	3,133,165	3,133,202	37	CCCCTCCACTACCCCTCCAATACCCCTCCAATACCCC
BX284602.5	3,133,275	3,133,312	37	CCCCTCCAATACCCCTCCAATACCCCTCCAATACCCC
BX284602.5	3,133,373	3,133,410	37	CCCCAACAGTACCCCTACAGAGCCCCTACAGTACCCC
BX284602.5	3,133,756	3,133,793	37	CCCCTCCACTACCCCTCCAATACCCCTCCAATACCCC
BX284602.5	3,134,018	3,134,055	37	CCCCTACATAACCCCTTCAGTACCCCTACAGTACCCC
BX284601.5	11,619,567	11,619,604	37	GGGGTACTGTAGGGGTACTGTAGGGGTACTGTAGGGG
BX284601.5	11,623,773	11,623,810	37	CCCCTACAGTACCCCTACAGTACCCCTACAGTACCCC
BX284601.5	11,624,746	11,624,783	37	GGGGTAATGTAGGGGTAATGTAGGGGTTCTGTAGGGG
BX284605.5	3,186,016	3,186,053	37	GGGTCCTGGGGGGGGGAGGGGGGGGGGGGGGGGGGGG
BX284605.5	19,360,486	19,360,523	37	GGGGTACTGTAGGGGTACTGTAGGGGGTACTGTAGGG
BX284605.5	19,362,259	19,362,296	37	GGGGTACTGTAGGGGTACTGTAGGGGTACTGTAGGGG
BX284603.4	12,839,195	12,839,232	37	GGGCAGAGATGGGAGAAGGGGGGGGGGGGGGGGGGGG
BX284605.5	4,213,497	4,213,534	37	CCCCTACAGTACCCCTACAGTACCCCAACTGCACCCC
BX284605.5	4,213,629	4,213,666	37	CCCCCTAAAGTACCCTACTGTACCCCTACAGTACCCC
BX284601.5	767,474	767,511	37	CCCCAAAAGTACCCCTACAAAACCCCTACAGTACCCC
BX284603.4	1,634,123	1,634,160	37	GGGGTGCTGTAGGGGTAATGTAGGGGTAATGTAGGGG
BX284603.4	1,634,123	1,634,160	37	GGGGTGCTGTAGGGGTAATGTAGGGGTAATGTAGGGG
BX284601.5	13,723,394	13,723,431	37	GGGGTACATCAGGGTACTGTAGGGGGTACTGTAGGGG
BX284601.5	13,723,460	13,723,497	37	GGGGTACTATAGGGGTACTGTAGGGGTACATCAGGGG
BX284601.5	13,723,614	13,723,651	37	GGGGTACTATAGGGGTACTGTAGGGGTACATCAGGGG
BX284606.5	6,756,261	6,756,298	37	GGGGGGGGGGGGGGGGGGGGTCTTAGGGAACTTTGGG
BX284601.5	13,859,687	13,859,724	37	CCCCATTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
BX284601.5	1,285,653	1,285,690	37	GGGGTACTGTAGGGGTACTGTAGGGGTACTGTAGGGG
BX284601.5	1,286,246	1,286,283	37	GGGTACTCTAGGGGTACTGTAGGGGGTACTGAAGGGG

Identified by G4Hunter:

For reasons of efficiency, the top 50 largest G-quadruplexes are listed. For a full list, click here.

Chromosome/Contig Name	Start	End	Length	Score	Sequence
BX284605.5	18,410,625	18,410,738	113	1.91	CTGGTGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCTGGGGTCT GGGGTCTGGAATC
BX284605.5	19,495,330	19,495,421	91	1.58	GAGAGCTTGGGGTGGGCCTTTGGGGTGGGCCTTTGGGGTGGGCCTTTGGGGTGGGCCTTTGGGGTGGGCCTTTGGGGTGGGCCTTTGGGGT
BX284601.5	14,391,787	14,391,874	87	-1.95	ATACCGCCTCCCCCAATAcatacccccccccccccaaataTTCCATACCTCCCCCCCCTCCCCTACCCCTCACAATTATTTACCCCT
BX284601.5	14,391,903	14,391,983	80	-1.93	TGTTCCCCTGTCCCCCACTGTGTCCCCCCAGTCCCCCACTGTCCCCCCTGTCCCCCACTGTGTCCCCCCAGGCCCCGACT
BX284601.5	810,770	810,845	75	-1.61	TTAATCATATTatgaccccccccccccaccccTCTTAATTTCCTAATCCCCCTCCCCCTCCTCCTCATAATGACC
BX284602.5	3,133,154	3,133,229	75	-1.63	ctcctacgaTACCCCTCCACTACCCCTCCAATACCCCTCCAATACCCCTCCAATACCCCTCcaatacccctacag
BX284602.5	3,133,745	3,133,820	75	-1.63	ctcctacgaTACCCCTCCACTACCCCTCCAATACCCCTCCAATACCCCTCCAATACCCCTCCAATACCCCTACAG
BX284601.5	14,137,887	14,137,958	71	-1.75	CTTGTCCCCCTGATACCCCCTGGTCCCCCTGATACCCCCGGTCCCCCCTGATACCCCCTAGCCTCCCTGAT
BX284603.4	133,065	133,136	71	-1.49	AGGCTTATGTcagaccccccccccccccctcagAGATAGcagaccccccccccccccaactGGTTTGCATG
BX284601.5	14,150,282	14,150,351	69	1.59	ACAAATTACTAGgtaaggggggggggggtgtcTGGAAAGGAGGGGGGAGGGGGTATATGGAAAAGCGGA
BX284604.4	1,260,874	1,260,943	69	1.57	cagtaggGCGATGGTGTGAGGGGGGCGGGAGTGTGGGGCGTGGTGTGGGGCGGGCGGGCGAGAGTGGCG
BX284603.4	3,877,457	3,877,525	68	2.22	GAAAAGAACCgagaagggggggggggggggggggggggggggggggatagGTGCGCGGGGGGAAAATC
BX284606.5	13,775,622	13,775,688	66	-2.2	CGATTCGACGCAAAccccacccccccccccccccccccccccccctctcccCTCATTTCACCAATC
BX284606.5	15,511,948	15,512,013	65	2.11	TCGTATATCTTTGAggggtggggggggggggggggggggggggggggcagtCAAATGGTGTGGTG
BX284601.5	1,974,163	1,974,228	65	-1.82	CAACGAATTTCagttccccccccccccccccccacatATCCCCTCCCCCATGTCCCTTTAAGCAA
BX284601.5	13,859,674	13,859,739	65	-2.17	AACCCTAATAAATCCCcatttcccccccccccccccccccccccccccccattttCGTGTCAATT
BX284603.4	1,908,531	1,908,595	64	-2.13	ccaaatttcactatttccccccccccccccccccccccccccccccccagaaaaatccgaattt
BX284604.4	1,647,354	1,647,418	64	2.11	ATGATAGATTGGAGgtggaggggggggggggggggggggggggggggagagaAACAGGAGGAAT
BX284601.5	14,231,040	14,231,104	64	2.11	ATGGGGAAAGGAGGTACatggaggggggggggggggggggggggggggtgtcTTGGAAGAGCTC
BX284606.5	15,892,028	15,892,092	64	-1.95	CATATATTCCGtttctcccccccccccccccccctctcccccccccccgctGTTTCGATCCTTT
BX284602.5	14,019,818	14,019,882	64	1.64	GTGGGCGGTAGCGGGGCGGTAGCGGGGCGGTAGCGGGGCGGTAGCGGGGCGGTAGCGGGGCTGT
BX284602.5	14,019,905	14,019,969	64	1.64	GTGGGCGGTAGCGGGGCGGTAGCGGGGCGGTAGCGGGGCGGTAGCGGGGCGGTAGCGGGGCGAT
BX284604.4	16,765,437	16,765,500	63	-2.08	TTCCATTCGACACCctcttccccccccccccccccccccccccccccaactTGACCTCCCGGG
BX284606.5	11,126,675	11,126,737	62	1.76	CACCGAAAAtgacggggggggggggggggggcaagcGGGCTTAAAAGGGGAGGGGGTACACA
BX284603.4	1,326,936	1,326,998	62	1.97	GTAGGGATGCTGTAGGGGtactgggggggggggggggggggtactgtaggggtgcTGTACGG
BX284603.4	1,326,936	1,326,998	62	1.97	GTAGGGATGCTGTAGGGGtactgggggggggggggggggggtactgtaggggtgcTGTACGG
BX284605.5	4,503,401	4,503,462	61	-1.98	TTGAACTCCAATCcgttcccccccccccccccccccctcccccccCAAATCACAACTGTCG
BX284605.5	20,756,365	20,756,426	61	-2.02	ACGACGACGAggaacccccccccccccccccccccccccccccaccgtccacaaacacaca
BX284605.5	3,186,007	3,186,068	61	2	TGAACTTTAGGGTCCTgggggggggaggggggggggggggggggggtgtcTAGACAGTCAG
BX284604.4	3,292,292	3,292,353	61	2	gagcGAGTAGATAAgggatggggggggggggggggggggggggggggaaccGATTCGTATT
BX284602.5	14,113,877	14,113,937	60	1.97	ATTAAGGGGGTTATGGTtagcggggggggggggggggggggagcgGGAGACAGGATTTTG
BX284604.4	3,629,050	3,629,110	60	2.02	GAGAAAGTGACGCGGggagtgggggggggggggggggggggggggatttGCTACCGGTTG
BX284605.5	6,452,905	6,452,965	60	-2	TTCAAATTGTAccttgcccccccccccccccccccccctcctccATGTCCCccaatcttc
BX284601.5	545,847	545,907	60	-1.97	CCCCTTTTTCACCTCAAtcagccccccccccccccccccccccccaatttCATTTGACTG
BX284606.5	16,398,922	16,398,982	60	2.02	ATGGGAAAAAGGTcagatgggggggggggggggggggtggggGGGTAAACTAGGAAATGT
BX284602.5	13,712,359	13,712,419	60	-1.97	CAGtgtccctacagtacccctccccccccccccccctacaTTCCCAACCCCTATACCTCC
BX284606.5	15,487,399	15,487,459	60	-1.87	GTTTGCATTACCCCCTtgcctccccccccccccctccccaCCACCACCTCTATCTTCCCG
BX284605.5	18,674,497	18,674,557	60	-1.77	CTTAAGCGTGagttcccccccccccccacacCCCACCCCctcaaaaaacccaaaaccCAT
BX284602.5	13,915,820	13,915,880	60	-2.03	CATCATAACCCCTTGtatacccccccccccccccccccccccccaccacCGATTTGATTG
BX284606.5	5,140,365	5,140,424	59	-1.9	CATACTAGAGCCCAACACccccaccccccccccccccccctcttcCTACTGAGCACCCA
BX284603.4	5,029,517	5,029,576	59	-1.9	tttcatttagcttacacccccccccccccccccccccccccaacgTCCCAGacaatttc
BX284604.4	1,784,940	1,784,999	59	1.95	TGGGGTCCGACCTTatcggggggggggggggggggggggggaagggatgaatatttgaa
BX284602.5	6,834,763	6,834,822	59	-1.61	ACGACCCTCGCCCGCCCCACGCCACTCCCACACCCCACCCCGTCTTCATCCCTTTCCTC
BX284606.5	1,452,672	1,452,731	59	1.93	TAGATTGGGATCAatgaagggggggggggggggggggtcacTGGAATGATGGGGGGAGA
BX284601.5	14,312,677	14,312,736	59	-1.95	TTGAGCCATCACAgccacccccccccccccccccccccccggaAGTCAGCATCGCCCCC
BX284601.5	11,005,295	11,005,354	59	1.81	GGGGAAGAAAGAAGGGAAGCACgggggggagggggggggggggcatgTCAAAAGAGACG
BX284603.4	2,699,647	2,699,706	59	-1.97	aaaaattaccattaaaccccccccccccccccccccccaataagccccgcccacataat
BX284602.5	1,087,780	1,087,839	59	-1.93	atcggtTCATCtcgtccccccccccccccccccccccattacACCCCTTAAGCCCACTC
BX284604.4	8,067,766	8,067,824	58	1.9	gtttttttgttgttggagggggggggggggggggggggggggttgcAGTAGTTAATGT
BX284605.5	16,693,159	16,693,217	58	1.91	AAGGGTCCCACTGCGgggggggaggggggggggggggggggcagtGGGTCTCGAAGCA