Micromonas commoda (GCA_000090985.2)


Overview

Organism information
NameMicromonas commoda
Taxonomy ID296587 View in NCBI
Taxonomic GroupEukaryota (Plants)
Genome details
Assembly AccessionGCA_000090985.2 View in NCBI
Assembly NameASM9098v2
Sequencing LevelComplete Genome (haploid)
Source DatabaseGENBANK
Available G-quadruplexes
Total83,927 By regular expression13,117 By G4Hunter70,810



G-quadruplexes


Identified by regular expression:

For reasons of efficiency, the top 50 largest G-quadruplexes are listed. For a full list, click here.
SourceChromosome/Contig NameStartEndLengthSequence
Genomiclcl|CP001323.1_mrna_MICPUN_56318_10261,1041,14844GGGGGGGGACGCGGGGGGGGACGCGGGGGAGGACGCGGGGGGGG
GenomicCP001335.1196,084196,12844GGGGGGGGGGGAGATCTGGGCATCTGGGGGGGGGGGGCTCTGGG
GenomicCP001323.1510,226510,27044CCCCGCCCGCGCCCCCCCCCACGTCCTCCCCCACGTCCCCCCCC
CDSlcl|CP001323.1_cds_ACO61237.1_10281,1041,14844GGGGGGGGACGCGGGGGGGGACGCGGGGGAGGACGCGGGGGGGG
Genomiclcl|CP001325.1_mrna_MICPUN_58161_32692,3462,38943CCCCCGTCGGCACCCCCGTCGGCACCCCCCGCGCTTCCCCCCC
GenomicCP001325.11,400,8071,400,85043CCCCCGTCGGCACCCCCGTCGGCACCCCCCGCGCTTCCCCCCC
CDSlcl|CP001325.1_cds_ACO62781.1_32712,3462,38943CCCCCGTCGGCACCCCCGTCGGCACCCCCCGCGCTTCCCCCCC
Genomiclcl|CP001327.1_mrna_MICPUN_101136_462783187342GGGGGGGGTAGACTCGGGGGTGCCGAGGGGGGTGCCGAGGGG
CDSlcl|CP001323.1_cds_ACO61129.1_82867771942GGGGGGTGCCGAGGGGGGTGCCGAGGGGGGTGACGAGGGGGG
GenomicCP001323.11,882,0711,882,11342GGGGGGTGCCGAAGGGGGTGCCGAAGGGGGTGCCGAAGGGGG
GenomicCP001333.1159,124159,16642CCCCCCTCGGCACCCCCCTCGGCACCCCCCTCGGCACCCCCC
CDSlcl|CP001327.1_cds_ACO64570.1_46011,8711,91342GGGGGGCGGGATGGGGAGGAGAGGGGGGGGAGGAGGGGGGGG
CDSlcl|CP001327.1_cds_ACO64229.1_462983187342GGGGGGGGTAGACTCGGGGGTGCCGAGGGGGGTGCCGAGGGG
CDSlcl|CP001323.1_cds_ACO61092.1_170784288442GGGGGGTGCCGAAGGGGGTGCCGAAGGGGGTGCCGAAGGGGG
GenomicCP001327.11,043,4631,043,50542GGGGGGGGTAGACTCGGGGGTGCCGAGGGGGGTGCCGAGGGG
GenomicCP001324.1225,522225,56442CCCCCCTCGGCACCCCCCTCGGCACCCCCCTCGGCAACCCCC
GenomicCP001327.1985,747985,78942CCCCCCCCTCCTCCCCCCCCTCTCCTCCCCATCCCGCCCCCC
GenomicCP001329.11,042,8411,042,88342CCCCCCTCGGCACCCCCCTCGGCACCCCCCTCGGCAACCCCC
Genomiclcl|CP001323.1_mrna_MICPUN_56516_82667771942GGGGGGTGCCGAGGGGGGTGCCGAGGGGGGTGACGAGGGGGG
GenomicCP001323.1103,244103,28642CCCCCCTCGTCACCCCCCTCGGCACCCCCCTCGGCACCCCCC
GenomicCP001328.1217,466217,50842CCCCCCTGGGCACCCCCCTGGGCACCCCCCTGGGCACCCCCC
Genomiclcl|CP001323.1_mrna_MICPUN_55642_170584288442GGGGGGTGCCGAAGGGGGTGCCGAAGGGGGTGCCGAAGGGGG
Genomiclcl|CP001327.1_mrna_MICPUN_59495_45991,8711,91342GGGGGGCGGGATGGGGAGGAGAGGGGGGGGAGGAGGGGGGGG
GenomicCP001575.11,026,8261,026,86741CCCCCGGCGGCACCCCCTCGGCACCCCCCTCGGCACCCCCC
GenomicCP001577.1305,499305,54041GGGGGCGGTCCAGGGGGCGGCCCAGGGGGCGGCCCGGGGGG
Genomiclcl|CP001327.1_mrna_MICPUN_101153_46561,1041,14541GGGGGTGCCGACGGGGGTGCCGACGGGGGTGCCGACGGGGG
Genomiclcl|CP001327.1_mrna_MICPUN_59578_468077481541GGGGATGCCGAGGGGGATGCCGAGGGGGGTGCCGAGGGGGG
Genomiclcl|CP001575.1_mrna_MICPUN_105968_597379683741CCCCCGGCGGCACCCCCTCGGCACCCCCCTCGGCACCCCCC
GenomicCP001574.11,913,6201,913,66141CCCCCCTCGGCACCCCCTTCGGCACCCCCTTCGGCACCCCC
GenomicCP001327.1648,527648,56841GGGGGTCTCGGTGGGGGTCTCGGCGGGGGCCTGGGCGGGGG
Genomiclcl|CP001574.1_mrna_MICPUN_54813_401,7581,79941GGGGGTGCCGACGGGGGTGCCGACGGGGGTGCCGACGGGGG
Genomiclcl|CP001326.1_mrna_MICPUN_58875_39871,3861,42741GGGGGCGAGGTTGGGGGCGAGGTCGGGGGCGAGGTCGGGGG
CDSlcl|CP001575.1_cds_ACO69270.1_597579683741CCCCCGGCGGCACCCCCTCGGCACCCCCCTCGGCACCCCCC
CDSlcl|CP001327.1_cds_ACO64243.1_46581,1041,14541GGGGGTGCCGACGGGGGTGCCGACGGGGGTGCCGACGGGGG
GenomicCP001327.1456,270456,31141CCCCCGACGGCACCCCCGACGGCACCCCCGACGGCACCCCC
CDSlcl|CP001327.1_cds_ACO64254.1_468277481541GGGGATGCCGAGGGGGATGCCGAGGGGGGTGCCGAGGGGGG
GenomicCP001323.1728,891728,93241CCCCCGCGTCCACCCCCGCGTCCACCCCCGCGTCCACCCCC
Genomiclcl|CP001576.1_mrna_MICPUN_61730_68031,0001,04141CCCCCGACGGCACCCCCGACGGCACCCCCGACGGCACCCCC
GenomicCP001333.1520,153520,19441CCCCCGAAGGCACCCCCGAAGGCACCCCCGAAGGCACCCCC
CDSlcl|CP001576.1_cds_ACO69650.1_68061,0001,04141CCCCCGACGGCACCCCCGACGGCACCCCCGACGGCACCCCC
GenomicCP001327.11,100,0211,100,06241GGGGGTGCCGACGGGGGTGCCGACGGGGGTGCCGACGGGGG
GenomicCP001577.1509,260509,30141CCCGCAGATACCCCCCCCGCTCGCTCCCCCTCCCGCGCCCC
CDSlcl|CP001326.1_cds_ACO63915.1_39891,3861,42741GGGGGCGAGGTTGGGGGCGAGGTCGGGGGCGAGGTCGGGGG
GenomicCP001327.11,142,4741,142,51541GGGGATGCCGAGGGGGATGCCGAGGGGGGTGCCGAGGGGGG
GenomicCP001576.1157,089157,13041CCCCCGACGGCACCCCCGACGGCACCCCCGACGGCACCCCC
GenomicCP001323.11,221,2731,221,31441CCCCCGAAGGCACCCCCGAAGGCACCCCCGAAGGCACCCCC
Genomiclcl|CP001576.1_mrna_MICPUN_61890_69661,8391,88041CCCCCGCCCCCGCCCCCGCCGATGCCCCCGCCCCCGCCCCC
CDSlcl|CP001574.1_cds_ACO68678.1_401,7581,79941GGGGGTGCCGACGGGGGTGCCGACGGGGGTGCCGACGGGGG
GenomicCP001327.11,208,9341,208,97541CCCCCCTCGGCACCCCCCTCGGCACCCCCCTCGGCACCCCC
CDSlcl|CP001576.1_cds_ACO70001.1_69691,8391,88041CCCCCGCCCCCGCCCCCGCCGATGCCCCCGCCCCCGCCCCC


Identified by G4Hunter:

For reasons of efficiency, the top 50 largest G-quadruplexes are listed. For a full list, click here.
SourceChromosome/Contig NameStartEndLengthScoreSequence
GenomicCP001326.11,136,0011,136,1381372.56
cgtcgagcggggCGAAAAGGGGGTGGAGGAGGGGGAAGGGGAaggggagggggagggggagggggagggggagggggagggggagggggagggggagggg
gagggggagggggagggggacgcgagggaggagagcG
GenomicCP001328.1228,226228,347121-1.8
ggtccccaccgccgccgtagccccctcccccgccgccgccgtagccccctcccccgccgccgtagccccctcccccgccgccgccgcggtacCCCCCACC
ccggcccccgccgccgcggcc
CDSlcl|CP001328.1_cds_ACO65086.1_49211,2091,3301211.8
GGCCGCGGCGGCGGGGGCCGGGGTGGGGGGTACCGCGGCGGCGGCGGGGGAGGGGGCTACGGCGGCGGGGGAGGGGGCTACGGCGGCGGCGGGGGAGGGG
GCTACGGCGGCGGTGGGGACC
RNAlcl|CP001328.1_mrna_MICPUN_101327_49191,2091,3301211.8
GGCCGCGGCGGCGGGGGCCGGGGTGGGGGGTACCGCGGCGGCGGCGGGGGAGGGGGCTACGGCGGCGGGGGAGGGGGCTACGGCGGCGGCGGGGGAGGGG
GCTACGGCGGCGGTGGGGACC
GenomicCP001326.11,164,5771,164,6971202.02
AGCTCGGAGACGGGGGAAGGGGACGAGGGGGACgagggagggggagggggcgcgggggcgagcgggGTGGACGAGGGGGTaggggagggcgcgggggtgg
cggcgggggcggcggacgct
RNAlcl|CP001326.1_mrna_MICPUN_50380_39529731,0931202.02
AGCTCGGAGACGGGGGAAGGGGACGAGGGGGACGAGGGAGGGGGAGGGGGCGCGGGGGCGAGCGGGGTGGACGAGGGGGTAGGGGAGGGCGCGGGGGTGG
CGGCGGGGGCGGCGGACGCT
CDSlcl|CP001326.1_cds_ACO63524.1_39549731,0931202.02
AGCTCGGAGACGGGGGAAGGGGACGAGGGGGACGAGGGAGGGGGAGGGGGCGCGGGGGCGAGCGGGGTGGACGAGGGGGTAGGGGAGGGCGCGGGGGTGG
CGGCGGGGGCGGCGGACGCT
GenomicCP001334.1318,921319,0351141.68
GATGGATGATGGGCCGGGGATTGGGGGTGCGATGGACGGGTGGGGGGGGGATGTGATGGATAAACGGGTGGGGGGGGTGTGATGGATGGGtggggagggc
gacggcggcggttg
GenomicCP001323.1728,833728,943110-1.75
GCGCCTGCCTCGGCccctcccgcccccgcgtccacccccgcgtccacccccgcgtccacccccgcgtccacccccgcgtccacccccgcgtccacccccg
cgtccaccgc
RNAlcl|CP001577.1_mrna_MICPUN_63302_79461,9972,1061091.83
GCCGGGCGGCGGGGAAAGGGGACCGGGCGGCGGGGGAAGAGGGGAGGGGGTCGGCGGGGCGAAAGCCGGGGCTGGGGTCGGCGGGGGAAGAGGCGCGGGG
GGTCGAAAC
GenomicCP001577.195,96996,078109-1.83
gtttcgaccccccgcgcctctTCCCCCGCCGACCCCAGCCCCGGCTTTCGCCCCGCCGACCCCCTCCCCtcttcccccgccgcccggtcccctttccccg
ccgcccggc
CDSlcl|CP001577.1_cds_ACO70448.1_79491,9972,1061091.83
GCCGGGCGGCGGGGAAAGGGGACCGGGCGGCGGGGGAAGAGGGGAGGGGGTCGGCGGGGCGAAAGCCGGGGCTGGGGTCGGCGGGGGAAGAGGCGCGGGG
GGTCGAAAC
GenomicCP001324.1583,388583,4951071.99
gcggctggccGGGgtaggggcggcggcggcgggggcgggggccgGGGCCGGGGCAAGGGTCGGGGCAGGGGCGGGGGtaggggcggaggcggcggccgag
gggggcg
GenomicCP001323.1510,214510,318104-2.04
CTAccaccgcgtccccgcccgcgcccccccccACGTCCTCCCCCACGTCcccccccgcgtcctcccccgcgtccccccccgcgtccccccccgcgcaacg
cctt
RNAlcl|CP001323.1_mrna_MICPUN_56318_10261,0921,1961042.04
AAGGCGTTGCGCGGGGGGGGACGCGGGGGGGGACGCGGGGGAGGACGCGGGGGGGGACGTGGGGGAGGACGTGGGGGGGGGCGCGGGCGGGGACGCGGTG
GTAG
CDSlcl|CP001323.1_cds_ACO61237.1_10281,0921,1961042.04
AAGGCGTTGCGCGGGGGGGGACGCGGGGGGGGACGCGGGGGAGGACGCGGGGGGGGACGTGGGGGAGGACGTGGGGGGGGGCGCGGGCGGGGACGCGGTG
GTAG
GenomicCP001575.1747,317747,4181011.93
cgatcgcgggcggggggctcggcgggggcggcgacggcgggggcggggagggaggagggggagacggcgggggcgggggcggtgacggcgggggcgtgaa
G
CDSlcl|CP001575.1_cds_ACO69492.1_5844104205101-1.93
CTTCACGCCCCCGCCGTCACCGCCCCCGCCCCCGCCGTCTCCCCCTCCTCCCTCCCCGCCCCCGCCGTCGCCGCCCCCGCCGAGCCCCCCGCCCGCGATC
G
RNAlcl|CP001575.1_mrna_MICPUN_60747_5842107208101-1.93
CTTCACGCCCCCGCCGTCACCGCCCCCGCCCCCGCCGTCTCCCCCTCCTCCCTCCCCGCCCCCGCCGTCGCCGCCCCCGCCGAGCCCCCCGCCCGCGATC
G
RNAlcl|CP001330.1_mrna_MICPUN_62347_74211,0581,1581002.16GACTTCGGGAGCCGGGGGGGCGCGGGGGGGGCGGGGCGGGGGTAGGGGGGGCGGTCGAGGGGGAAGGGGCGCGGGGCGCGCGCGGGGGCGCGAGGGGTGA
CDSlcl|CP001330.1_cds_ACO66404.1_74241,0581,1581002.16GACTTCGGGAGCCGGGGGGGCGCGGGGGGGGCGGGGCGGGGGTAGGGGGGGCGGTCGAGGGGGAAGGGGCGCGGGGCGCGCGCGGGGGCGCGAGGGGTGA
GenomicCP001330.1236,740236,840100-2.16TcacccctcgcgcccccgcgcgcgccccgcgccccttcCCCCTCGACCGCCCCCCCtacccccgccccgccccccccgcgcccccccggCTCCCGAAGTC
RNAlcl|CP001576.1_mrna_MICPUN_102606_68663,1033,20299-2.13CCAGGACTTGCCCGCCTCCCCCCTCCCCGTCCCCCCCTCCTCCCTCCCCCTCTCCCCCTCCCCCGTCCCCTCCTCCCCCCTCGCCGCCGCCTCCCAAGG
CDSlcl|CP001576.1_cds_ACO69680.1_68693,1033,20299-2.13CCAGGACTTGCCCGCCTCCCCCCTCCCCGTCCCCCCCTCCTCCCTCCCCCTCTCCCCCTCCCCCGTCCCCTCCTCCCCCCTCGCCGCCGCCTCCCAAGG
CDSlcl|CP001327.1_cds_ACO64570.1_46011,8261,925991.95GGTGGACGGGGAGGATGAGGAAAGGGGCGGCGGGGGCGGTGTGTCGGGGGGCGGGATGGGGAGGAGAGGGGGGGGAGGAGGGGGGGGCGTGCAGCTCAC
RNAlcl|CP001327.1_mrna_MICPUN_59495_45991,8261,925991.95GGTGGACGGGGAGGATGAGGAAAGGGGCGGCGGGGGCGGTGTGTCGGGGGGCGGGATGGGGAGGAGAGGGGGGGGAGGAGGGGGGGGCGTGCAGCTCAC
GenomicCP001327.1985,735985,83499-1.95GTGAGCTGCACGCCCCCCCCTCCTCCCCCCCCTCTCCTCCCCATCCCGCCCCCCGAcacaccgcccccgccgccccttTCCTCATCCTCCCCGTCCACC
GenomicCP001576.1297,451297,55099-2.13CCAGGACTTGCCCGCCTCccccctccccgtcccccccTCCTCCCTCCCCCTCTCCCCCTCCCCCGTCCCCTCCtcccccctcgccgccgcctcccaaGG
RNAlcl|CP001323.1_mrna_MICPUN_56474_8692,4382,536981.71TCGAGGGTTGGACGACGGGGACGGGGATGGGGACGACGGGGACGATGGGGACGATGGGGATTGGGAGGACGGGGACGGGGACGGGGAGAACAAGTCGG
CDSlcl|CP001323.1_cds_ACO60681.1_8712,4382,536981.71TCGAGGGTTGGACGACGGGGACGGGGATGGGGACGACGGGGACGATGGGGACGATGGGGATTGGGAGGACGGGGACGGGGACGGGGAGAACAAGTCGG
GenomicCP001323.1190,331190,429981.71TCGAGGGttggacgacggggacggggatggggacgacggggacgatggGGACGATGGGGATtgggaggacggggacggggacggggagaaCAAGTCGG
GenomicCP001326.1166,498166,595971.97ggaggacgtaGGAAGGGGCGGAAGGGGCGGAAggggcgggggtggacgtgGGGGCAGGGGTaagggcgggggcgggcgcgggggtggacgcgggagC
GenomicCP001331.1708,053708,149961.72acggcagcggcggggaAGGGGAAGAAGGCGGGGGAGGAATCGGGGGAGTCGGAGGGGTAGAAtggggaggagggggagggggacGACCGGTTCGCG
CDSlcl|CP001331.1_cds_ACO66818.1_87651,2641,360961.72ACGGCAGCGGCGGGGAAGGGGAAGAAGGCGGGGGAGGAATCGGGGGAGTCGGAGGGGTAGAATGGGGAGGAGGGGGAGGGGGACGACCGGTTCGCG
RNAlcl|CP001331.1_mrna_MICPUN_63720_87621,2641,360961.72ACGGCAGCGGCGGGGAAGGGGAAGAAGGCGGGGGAGGAATCGGGGGAGTCGGAGGGGTAGAATGGGGAGGAGGGGGAGGGGGACGACCGGTTCGCG
GenomicCP001334.193,38993,48495-1.68CGCCCCGACCACCGACtcaccgccccgccccgaccACCCACCCACCAACCCTGACCCTAAACCCACCCACCCACCCCCCGGCACCCAGTTCTCCG
GenomicCP001577.199,86399,95794-1.71AGATCCCAACCCGCCCGTCCCAACCCGCCCGTCCCGACGCCCCGACCCTTCCCCCGCATGACCCTTCCCCCGCCCCAATTCCCCAcgtcgcgca
GenomicCP001332.1269,782269,874921.89GaagacgacggggaggatgagggggatggggaggaggagggcgatgGGGATGGGGGCGAGGGGGATggggcggaggtggaggcgggtGGCGA
CDSlcl|CP001324.1_cds_ACO62146.1_19691,2511,343921.8GGCGGAAGAGGAGGCGGGGGCGGAAGGGGCGGAAGGGGCGGAAGGGGCGGGAGAGGCGGAAGGGGCGGGAGAGGCGGAAGGGGGGAGAAGCG
RNAlcl|CP001324.1_mrna_MICPUN_56817_19671,2511,343921.8GGCGGAAGAGGAGGCGGGGGCGGAAGGGGCGGAAGGGGCGGAAGGGGCGGGAGAGGCGGAAGGGGCGGGAGAGGCGGAAGGGGGGAGAAGCG
GenomicCP001324.1493,003493,09592-1.8CGCTTCTCCCCCCTTCCGCCTCTCCCGCCCCTTCCGCCTCTCCCGCCCCTTCCGCCCCTTCCGCCCcttccgcccccgcctcctcttccgcc
RNAlcl|CP001323.1_mrna_MICPUN_113808_1365786877911.97GCTGGAGGAGGAGGAGGGCGGCGGGGGCGGGGTTGGAGGCGGGGGCGGGGTTGGAGGCGGGGGCGGGGAGGGGAAGGCGACGGGCGTGAGG
CDSlcl|CP001323.1_cds_ACO60923.1_1367776867911.97GCTGGAGGAGGAGGAGGGCGGCGGGGGCGGGGTTGGAGGCGGGGGCGGGGTTGGAGGCGGGGGCGGGGAGGGGAAGGCGACGGGCGTGAGG
GenomicCP001326.11,293,9591,294,050911.89cgcgcggcggaggcggcggggcggggcgggggaaggggaggcgggggaaggggaggcggacgacggggacggggaggcgggggaggcgccc
GenomicCP001323.11,140,9341,141,025911.97gctggaggaggaggagggcggcgggggcggggttggaggcgggggcggggttggaggcgggggcggggaggggAAGGCGACGGGCGTGAGG
CDSlcl|CP001327.1_cds_ACO64653.1_47731,4791,568892.01GCGATGAGGGCGGGGAGAGGCGCGGGGGGGAGGGAGGGTGGGGACGGGGAGGAGGGTGGGGACGGGGAGGAGGGGGGGAGCGCGCCTCT
RNAlcl|CP001327.1_mrna_MICPUN_59674_47711,4791,568892.01GCGATGAGGGCGGGGAGAGGCGCGGGGGGGAGGGAGGGTGGGGACGGGGAGGAGGGTGGGGACGGGGAGGAGGGGGGGAGCGCGCCTCT
GenomicCP001327.11,328,4351,328,52489-2.01AGAGGCGCGCTCcccccctcctccccgtccccaccctcctccccgtccccaccCTCCctcccccccgcgcctctccccgccctcatcgc
CDSlcl|CP001332.1_cds_ACO67192.1_90421,5871,674871.9GAAGACGACGGGGAGGATGAGGGGGATGGGGAGGAGGAGGGCGATGGGGATGGGGGCGAGGGGGATGGGGCGGAGGTGGAGGCGGAT
RNAlcl|CP001332.1_mrna_MICPUN_64011_90391,5871,674871.9GAAGACGACGGGGAGGATGAGGGGGATGGGGAGGAGGAGGGCGATGGGGATGGGGGCGAGGGGGATGGGGCGGAGGTGGAGGCGGAT

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