Botrytis cinerea B05.10 (GCA_000143535.4)


Overview

Organism information
NameBotrytis cinerea B05.10
Taxonomy ID332648 View in NCBI
Taxonomic GroupEukaryota (Fungi)
Genome details
Assembly AccessionGCA_000143535.4 View in NCBI
Assembly NameASM14353v4
Sequencing LevelComplete Genome (haploid)
Source DatabaseGENBANK
Available G-quadruplexes
Total62,229 By regular expression8,031 By G4Hunter54,198



G-quadruplexes


Identified by regular expression:

For reasons of efficiency, the top 50 largest G-quadruplexes are listed. For a full list, click here.
SourceChromosome/Contig NameStartEndLengthSequence
GenomicCP009808.11,901,5151,901,57055GGGGGGTTTTTTAGGGGGGGGGGGGGGGGGGGGGGGGACGGGGGAAAGGAGGGGG
GenomicCP009816.1214,806214,85145GGGGAAATGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGTTGGG
GenomicCP009808.1126,856126,89842CCCCCCTCCAACTCCCCCTCCAACTCCCCTCCAACTCCCCCC
GenomicCP009809.12,788,0602,788,10242GGGGGGCAGAAGGGGGGGGGGGGGGGGGGGAGGGGGTTTGGG
CDSlcl|CP009817.1_cds_ATZ56725.1_115492,0582,09941CCCCCTTCGTCACCCCCTTCGTCACCCCCTTCTTCGCCCCC
GenomicCP009817.12,120,2732,120,31441GGGGGCGAAGAAGGGGGTGACGAAGGGGGTGACGAAGGGGG
Genomiclcl|CP009817.1_mrna_BCIN_13g05570_115492,4002,44141CCCCCTTCGTCACCCCCTTCGTCACCCCCTTCTTCGCCCCC
GenomicCP009808.1126,905126,94641CCCCTCCAACTCCCCCCTCCAACTCCCCCTTTAACTCCCCC
GenomicCP009807.12,694,9782,695,01941CCCCCCCCCGCCCCCCCCCCCCCCCCTTATCCCCTCGCCCC
GenomicCP009811.1344,896344,93741GGGGAGAGGGAGGGGGAGAGGGAGGGGGAGAGGGAGGGGGG
GenomicCP009814.11,609,2221,609,26341CCCCCTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Genomiclcl|CP009814.1_mrna_BCIN_10g04180_923944541GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGAGGGGG
GenomicCP009810.12,319,7082,319,74941CCCCCCCCCCCCCCCCCCCCCCCTTTTCCCCCTCCGCCCCC
GenomicCP009817.11,560,0791,560,11940CCCTTCATTCCCCCCCCCCTCCCATCCCCCTGCAACTCCC
GenomicCP009806.1491,608491,64739GGGCGGAAGGGGGGGGAAGGGGGGGGGGGGGAGGGGGGG
GenomicCP009806.12,462,7652,462,80439CCCAATGCCCCCCCCCCCCCCCCCCCCCCCAAAGTGCCC
GenomicCP009805.13,346,2043,346,24238GGGGGGTTTGCGTGGGGGGTGTTGGGTGGGGGGGGGGG
Genomiclcl|CP009808.1_mrna_BCIN_04g03990_40461,7331,77138GGGGGGAGTGAGGGGGTGAGAGAGGGCGGGAGTGGGGG
Genomiclcl|CP009808.1_mrna_BCIN_04g03990_40471,9161,95438GGGGGGAGTGAGGGGGTGAGAGAGGGCGGGAGTGGGGG
GenomicCP009812.1379,937379,97538GGGGGCAAGGGGTGAGGTAGGGGGGGGGGGGGGGGGGG
GenomicCP009811.11,196,6921,196,73038GGGGGGAAAGGGAGGGGAAAGAGGGGGAAAAGGAGGGG
CDSlcl|CP009808.1_cds_ATZ49222.1_40461,6651,70338GGGGGGAGTGAGGGGGTGAGAGAGGGCGGGAGTGGGGG
CDSlcl|CP009808.1_cds_ATZ49223.1_40471,1431,18138GGGGGGAGTGAGGGGGTGAGAGAGGGCGGGAGTGGGGG
GenomicCP009808.11,422,8721,422,91038CCCCCACTCCCGCCCTCTCTCACCCCCTCACTCCCCCC
GenomicCP009805.13,830,8163,830,85438CCCCACTACCCACTATCCCCCCCCCCCCTTTCGCTCCC
Genomiclcl|CP009805.1_mrna_BCIN_01g10960_13382,4082,44638GGGAGCGAAAGGGGGGGGGGGGATAGTGGGTAGTGGGG
GenomicCP009809.11,928,3521,928,39038CCCATCCACCCATCTACCCATCCACCCCCCCCCCCCCC
Genomiclcl|CP009811.1_mrna_BCIN_07g03310_65705,0225,06038GGGGGGAAAGGGAGGGGAAAGAGGGGGAAAAGGAGGGG
Genomiclcl|CP009811.1_mrna_BCIN_07g03310_65714,4464,48438GGGGGGAAAGGGAGGGGAAAGAGGGGGAAAAGGAGGGG
GenomicCP009814.1963,853963,89138GGGGCCAGGAGGGGGGGGGCGGGGGGGGGGGGGGAGGG
GenomicCP009807.11,553,5511,553,58938CCCATCAATTCCCCCCCCCCCCCCCCATCCCAATTCCC
Genomiclcl|CP009806.1_mrna_BCIN_02g07390_22863,3073,34437GGGGTTTATTTGGGGTGTATGGGGGTACTTGCGGGGG
GenomicCP009805.13,845,3783,845,41537GGGGGATACGAGGGGTGCGGGGAAGGGGGGGGGGGGG
CDSlcl|CP009818.1_cds_ATZ57301.1_121251,3591,39637GGGTGGGCTGGGGGGGTGGTGAGGGGGTTGGGGAGGG
Genomiclcl|CP009806.1_mrna_BCIN_02g08460_24031,0701,10737GGGGGGTGGCAATGGGGAGGGGAGGGGAGGGGAGGGG
GenomicCP009806.11,735,1391,735,17637GGGAGGAAGGGGGGAAGGAAGGGAAAGGGGGGGGGGG
GenomicCP009815.1997,505997,54237CCCCCCCTCCTCTCCCCTCCTGCTCCCTCCTGCTCCC
GenomicCP009820.11,462,3211,462,35837CCCCTTTCCTCCCCTTCCCTCCCCTAACTTTCCCCCC
GenomicCP009819.11,407,2961,407,33337CCCTTCTATCCCCCCCCCCCCCCCCCCCCACCCCCCC
GenomicCP009818.11,488,7811,488,81837CCCCCCACCGCCTCCCCTCCCCTTCCCTTCCCTTCCC
GenomicCP009806.12,620,9422,620,97937GGGGTTTATTTGGGGTGTATGGGGGTACTTGCGGGGG
GenomicCP009816.11,694,7351,694,77237CCCCCCCCATCCTTCCCCTCCCTCTCCCTCTCCACCC
GenomicCP009813.12,443,3842,443,42137CCCCCCTCCCCCTCCCCCTACCCCTCCCCATTCCCCC
Genomiclcl|CP009818.1_mrna_BCIN_14g04540_121251,3871,42437GGGTGGGCTGGGGGGGTGGTGAGGGGGTTGGGGAGGG
GenomicCP009808.12,130,8242,130,86137CCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCAACCC
GenomicCP009817.1312,149312,18637GGGAATGAGGGGGAGGGGTAGGGGGGGGGGGGGGGGG
CDSlcl|CP009806.1_cds_ATZ47462.1_22862,0852,12237GGGGTTTATTTGGGGTGTATGGGGGTACTTGCGGGGG
GenomicCP009811.11,207,4191,207,45637CCCCAGAAGAACCCCAGAAGACCCCCAGAAGACCCCC
GenomicCP009811.11,592,5411,592,57837CCCCATCTCATCCCAACTCATCCCCTCCCCCTCCCCC
GenomicCP009811.11,667,6771,667,71437CCCCCCCCCCCCCCCCCCCCCCCCCTTCCCCAGCCCC


Identified by G4Hunter:

For reasons of efficiency, the top 50 largest G-quadruplexes are listed. For a full list, click here.
SourceChromosome/Contig NameStartEndLengthScoreSequence
GenomicCP009810.12,387,0882,387,3142262.25
GATGGGGAGGTTTAGATGATTGGGgtggggagggggagaggggagaggggagaggggagaggggagaggggagaggggagaggggagaggggagagggga
gaggggagaggggagaggggagaggggagaggggagaggggagaggggagaggggagaggggagaggggagaggggagaggggagaggggagaggggaga
ggggagaggggagatggTATATGGAA
GenomicCP009818.11,560,7071,560,896189-1.68
tctctccctctccctctccctctccctctccctctcccccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctcc
ctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctt
GenomicCP009811.11,484,6211,484,793172-1.6
cttcccttcctcccttcctcccttcctcccttcctcccttcctcccttcctcccttcctcccttcctcccttcctcccttcctcccttcctcccttcctc
ccttcctcccttcctcccttcctcccttcctcccttcctcccttcctcccttcctcccttcctcccttcctc
GenomicCP009817.1646,834646,970136-1.79
TTTTCCCATCCCCTgcttccctctcccccctctcccaacacctcccctcctccaatcccaaacccaaacccccaaacccccaaacccccaaacccACAAC
CCACTAACCcacccctctctccctccaccCAGAGTT
GenomicCP009815.1854,834854,961127-1.61
atctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctct
ccctctccctctccctctccctctcct
GenomicCP009815.1613,949614,0741251.76
TTTGTGAGGAGTGGAatggggggagggaggggaagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaag
ggaagggaagggaaggagggACGGA
GenomicCP009818.11,781,7181,781,8381201.75
TGAGATTGGGAGGCTGGTTGGGGAGGGGGTTAGTTAGGGGGTGTGGTGTGGGAGGGGGTTAGTTAGGGGGTGTGGTGTGGGAGGGGGTGGATGACGGGGA
GGGGGGACTTACAGTGCGTT
GenomicCP009806.13,234,4113,234,5281172.21
CCATGAGATgtgggaggggaaggggagggggaaggggaaggggaaggggaaggggaaggggaaggggaaggggaaggggaaggggaaggggaaggggaag
gggaatggGAAGTTCCT
CDSlcl|CP009808.1_cds_ATZ49024.1_384844160116-1.91
AGACTCCAACTACCATCCCCTCCCCGCCGACTTCTTCCCCGCCCCCCATACCTACACCCCCTACCCCCACACCCCCCTCCCCCTCATCGCCCCGCGCATC
CTCCCCGCCACCATCC
RNAlcl|CP009808.1_mrna_BCIN_04g02240_3848284400116-1.91
AGACTCCAACTACCATCCCCTCCCCGCCGACTTCTTCCCCGCCCCCCATACCTACACCCCCTACCCCCACACCCCCCTCCCCCTCATCGCCCCGCGCATC
CTCCCCGCCACCATCC
GenomicCP009808.1842,320842,436116-1.91
AGACTCCAACTACCATCCCCTCCCCGCCGACTTCTTCCCCGCCCCCCATACCTACACCCCCTACCCCCacacccccctccccctcatCGCCCCGCGCATC
CTCCCCGCCACCATCC
GenomicCP009815.1540,155540,2681131.66
gaaaggaagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaagggaggggaagg
gaaggataAGAAA
GenomicCP009808.1126,845126,955110-1.85
TCTATCCAACTCCCCCCTCCAACTCCCCCTCCAACTCCCCTCCAACTCCCCCCTCCAACTCCCCTCCAACTCCCCCCTCCAACTCCCCCTTTAACTCCCC
CTTTAACTTC
GenomicCP009820.11,730,6841,730,7931091.98
TGAGgttggggagggagaagaggaggggggggggagaagaggaggggggagggagaggaggaggggggagggagaggaggaggggggagggagaggagga
ggaggagca
RNAlcl|CP009819.1_mrna_BCIN_15g04960_128241,6481,7541061.89
CGCCGTTGGGGTATGGGGTTAAGGGGGGTGGGGGAGGGGGAGGACCGGTGGGGAATGGATGGGGGTTTGTGGGTGGTGGGAGGGGGGATGGGAAGAGAGA
TTAGGT
GenomicCP009819.11,666,8211,666,927106-1.89
ACCTAATCTCTCTTCCCATCCCCCCTCCCACCACCCACAAACCCCCATCCATTCCCCACCGgtcctccccctcccccaccCCCCTTAACCCCATACCCCA
ACGGCG
RNAlcl|CP009814.1_mrna_BCIN_10g05960_94311,8061,911105-1.77
CCATCTCCCCCTCTCAAACCCTAACCCCAACCCCAACCCCCTTCCCCTCTCTCTCTCCAAACCCCTCCCCACACAAAAATCCCCACCCCTCCGCACCGCA
AAAAA
RNAlcl|CP009814.1_mrna_BCIN_10g05960_94321,8271,932105-1.77
CCATCTCCCCCTCTCAAACCCTAACCCCAACCCCAACCCCCTTCCCCTCTCTCTCTCCAAACCCCTCCCCACACAAAAATCCCCACCCCTCCGCACCGCA
AAAAA
CDSlcl|CP009814.1_cds_ATZ54608.1_94311,6691,774105-1.77
CCATCTCCCCCTCTCAAACCCTAACCCCAACCCCAACCCCCTTCCCCTCTCTCTCTCCAAACCCCTCCCCACACAAAAATCCCCACCCCTCCGCACCGCA
AAAAA
CDSlcl|CP009814.1_cds_ATZ54607.1_94321,6481,753105-1.77
CCATCTCCCCCTCTCAAACCCTAACCCCAACCCCAACCCCCTTCCCCTCTCTCTCTCCAAACCCCTCCCCACACAAAAATCCCCACCCCTCCGCACCGCA
AAAAA
GenomicCP009814.12,289,3952,289,500105-1.77
cCATCTCCCCCTCTCAAACCCtaaccccaaccccaacccccttcccctctctctctccaaacCCCTCCCCACACAAAAATCCCCACCCCTCCGCACCGCA
AAAAA
CDSlcl|CP009819.1_cds_ATZ58000.1_128249161,0201041.89
CGCCGTTGGGGTATGGGGTTAAGGGGGGTGGGGGAGGGGGAGGACCGGTGGGGAATGGATGGGGGTTTGTGGGTGGTGGGAGGGGGGATGGGAAGAGAGA
TTAG
RNAlcl|CP009814.1_mrna_BCIN_10g04250_92463,4253,5281032.03
TGGATGGGTTGGGCGGGCTGAGGTGGGGGGTGGGGGGGAGGCTGGGGGAGAGCTTGGGGAGGATGATGGGGGGAGGGGGGGTGGGATAGGATGGGATAGG
ATA
GenomicCP009805.1853,724853,8271031.8
agGGGAGGTTGGatgaggagagaggggagggggttgggatgaggagagaggggagggggttgggatgaggagagaggggagggggttggGATGCAGGTAT
AGT
GenomicCP009814.11,643,4651,643,5681032.03
TGGATGGGTTGGGCGGGCTGAGGTGGGGGGTGGGGGGGAGGCTGGGGGAGAGCTTGGGGAGGATgatggggggagggggggtgggataggatgggatagg
ata
GenomicCP009808.11,852,5281,852,629101-1.6
ttccaagctcccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctcccctccctaCACCCTCCACAAAA
C
GenomicCP009811.11,090,2521,090,352100-1.73TTCGCACTCTCCTCCCCACCCGTCCCCTCTCCACCCATCCACTCCCCCATTCCCTCACCCACCCCATCCTAATCCCCCAAACTCCCCTCACAGCTTCCCA
GenomicCP009819.1661,699661,799100-1.94atatcccatatcccatatccccTTCCCCAATTCCCCTTCCCcaattcccatccccatccccatccccatccccatccccaaatccaatccaaatccccaG
CDSlcl|CP009811.1_cds_ATZ51704.1_65281,2811,3811001.73TGGGAAGCTGTGAGGGGAGTTTGGGGGATTAGGATGGGGTGGGTGAGGGAATGGGGGAGTGGATGGGTGGAGAGGGGACGGGTGGGGAGGAGAGTGCGAA
CDSlcl|CP009811.1_cds_ATZ51705.1_65291,2811,3811001.73TGGGAAGCTGTGAGGGGAGTTTGGGGGATTAGGATGGGGTGGGTGAGGGAATGGGGGAGTGGATGGGTGGAGAGGGGACGGGTGGGGAGGAGAGTGCGAA
CDSlcl|CP009811.1_cds_ATZ51706.1_65301,2811,3811001.73TGGGAAGCTGTGAGGGGAGTTTGGGGGATTAGGATGGGGTGGGTGAGGGAATGGGGGAGTGGATGGGTGGAGAGGGGACGGGTGGGGAGGAGAGTGCGAA
RNAlcl|CP009811.1_mrna_BCIN_07g02970_65281,9722,0721001.73TGGGAAGCTGTGAGGGGAGTTTGGGGGATTAGGATGGGGTGGGTGAGGGAATGGGGGAGTGGATGGGTGGAGAGGGGACGGGTGGGGAGGAGAGTGCGAA
RNAlcl|CP009811.1_mrna_BCIN_07g02970_65291,9972,0971001.73TGGGAAGCTGTGAGGGGAGTTTGGGGGATTAGGATGGGGTGGGTGAGGGAATGGGGGAGTGGATGGGTGGAGAGGGGACGGGTGGGGAGGAGAGTGCGAA
RNAlcl|CP009811.1_mrna_BCIN_07g02970_65302,0462,1461001.73TGGGAAGCTGTGAGGGGAGTTTGGGGGATTAGGATGGGGTGGGTGAGGGAATGGGGGAGTGGATGGGTGGAGAGGGGACGGGTGGGGAGGAGAGTGCGAA
GenomicCP009815.1854,957855,05598-1.59tcctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctccctctct
GenomicCP009813.11,222,7281,222,82698-1.9acCACAACCCACAACCCACACACCCcaatcccctcccctcccgatcccattcccaaacccaccccccctcctccccctctctaTAAACCATCCCCCGA
GenomicCP009815.188,07888,17597-1.9atccagaacttcctcctccccctcccccttctcctcctcctcttcctccccctACCCCCCTACCCCCCTACCCcctacctccctccctaccGTGCTC
RNAlcl|CP009807.1_mrna_BCIN_03g08140_34472,3862,482961.73CGCTTGGAGTAGAGGGGGGGAGTGGTGTGTGGTTGCTGGGGGGGAGGGGGTTGTGGCGGTTTTGGGGAGGGGGGGTGTGGGAGAGAAGTGAGGTGG
RNAlcl|CP009807.1_mrna_BCIN_03g08140_34482,6632,759961.73CGCTTGGAGTAGAGGGGGGGAGTGGTGTGTGGTTGCTGGGGGGGAGGGGGTTGTGGCGGTTTTGGGGAGGGGGGGTGTGGGAGAGAAGTGAGGTGG
GenomicCP009820.11,263,9511,264,04796-1.85AACCCACCCTCACTACCACCTTCCCCCACCctccccatctccctcccctttccctttcccctctcaTCCCCCCCACCCAAATTCAACCCACCAATC
CDSlcl|CP009820.1_cds_ATZ58603.1_13427143239961.85GATTGGTGGGTTGAATTTGGGTGGGGGGGATGAGAGGGGAAAGGGAAAGGGGAGGGAGATGGGGAGGGTGGGGGAAGGTGGTAGTGAGGGTGGGTT
RNAlcl|CP009820.1_mrna_BCIN_16g03350_13427728824961.85GATTGGTGGGTTGAATTTGGGTGGGGGGGATGAGAGGGGAAAGGGAAAGGGGAGGGAGATGGGGAGGGTGGGGGAAGGTGGTAGTGAGGGTGGGTT
GenomicCP009814.1541,721541,817961.65tggagagaaggtggaggtggagggggGAGTTTTTGGTGGGTGGGGGtgaggatggggatggggatgaagatggggaggatggggatgagtTTGTCG
GenomicCP009807.12,798,6872,798,78396-1.73CCACCTCACTTCTCTCCCacaccccccctccccaaaaccGCCacaaccccctcccccccagCAACCACACACCACTCCCCCCCTCTACTCCAAGCG
CDSlcl|CP009809.1_cds_ATZ49808.1_46321,3441,43995-1.77CAAACGCCTACTTCCCCCACTTCCCCCATCGAAACCCCCTCTTCCCCGCCTCTCTCCTCCCCCTCCTCCCCCTCCTCTTCCATCTCCCCAACCAC
GenomicCP009809.1780,014780,109951.77GTGGTtggggagatggaagaggagggggaggagggggaggagagaggcgGGGAAGAGGGGGTTTCGATGGGGGAAGTGGGGGAAGTAGGCGTTTG
RNAlcl|CP009809.1_mrna_BCIN_05g02130_46321,4611,55695-1.77CAAACGCCTACTTCCCCCACTTCCCCCATCGAAACCCCCTCTTCCCCGCCTCTCTCCTCCCCCTCCTCCCCCTCCTCTTCCATCTCCCCAACCAC
GenomicCP009812.1676,801676,895941.83GAAATGGTTTCTGGGgtgggaaaggggggaggggatgggaaaggggagaggggatggGAAACGGGAGAGGGGATGGGGAGAGTGTGGAATTGGA
GenomicCP009807.12,145,7432,145,83794-2.01ctcctcctcctcctcctcctcctcccctcacccctctcccctcacccctctcccacccctccccatccccagCAACCCCTTTTCCTGCCCCAAA
CDSlcl|CP009818.1_cds_ATZ57301.1_121251,3451,438931.9TGCGGGCGGTTTGTGGGTGGGCTGGGGGGGTGGTGAGGGGGTTGGGGAGGGAGAGGGAGATGGGGATGGGGAAGGTGAGGGAAGGGAGTGTGT

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