A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scientific Questions

Dr. Georgios A. Pavlopoulos (pavlopoulos @ fleming.gr)

Comments & Technical Assistance

Dr. Fotis A. Baltoumas (baltoumas @ fleming.gr)

Bioinformatics & Integrative Biology Lab

Institute for Fundamental Biological Research
Biomedical Sciences Research Center "Alexander Fleming"
34 Fleming St., Vari (Athens), 16672, Greece

If you find NMPFamsDB useful in your research please cite the following two publications:

Baltoumas, F.A., Karatzas, E., Liu, S., Ovchinnikov, S., Chen, I.M, Kyrpides, N.C., Pavlopoulos, G.A.
NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
Nucleic Acids Research (2023); gkad800, doi: 10.1093/nar/gkad800, PubMed: 37811892

Pavlopoulos, G.A., Baltoumas, F.A., Liu, S., Selvitopi, O., Camargo, A.P., Nayfach, S., Azad, A., Roux, S., Call, L., Ivanova, N.N., Chen, I.M, Paez-Espino, D., Karatzas, E., Novel Metagenome Protein Families Consortium, Iliopoulos, I., Konstantinidis, K., Tiedje, Pett-Ridge, J., J.M., Baker, D., Visel, A., Ouzounis, C.A., Ovchinnikov, S., Buluç, A., Kyrpides, N.C.
Unraveling the functional dark matter through global metagenomics
Nature (2023), doi: 10.1038/s41586-023-06583-7, PubMed: 37821698

Official press release for NMPFamsDB:

Doubling Down on Known Protein Families
Shedding light on the diversity of microbial communities by looking at protein function within them
Links: B.S.R.C. "Alexander Fleming" || D.O.E. Joint Genome Institute

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