Metagenome / Metatranscriptome Family F018559

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F018559
Family Type	Metagenome / Metatranscriptome
Number of Sequences	234
Average Sequence Length	40 residues
Representative Sequence	FYTTGMEHSPTSATGTGWERTPWHATQRAAWEALKKAEPSG
Number of Associated Samples	156
Number of Associated Scaffolds	234

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	12.75 %
% of genes near scaffold ends (potentially truncated)	46.58 %
% of genes from short scaffolds (< 2000 bps)	52.99 %
Associated GOLD sequencing projects	140
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.402 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (17.094 % of family members)
Environment Ontology (ENVO)	Unclassified (22.222 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.308 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.74% β-sheet: 0.00% Coil/Unstructured: 78.26%
Feature Viewer

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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 234 Family Scaffolds
PF04392	ABC_sub_bind	5.56
PF00072	Response_reg	2.99
PF07883	Cupin_2	1.71
PF13924	Lipocalin_5	1.71
PF00583	Acetyltransf_1	1.28
PF00005	ABC_tran	1.28
PF00106	adh_short	0.85
PF00496	SBP_bac_5	0.85
PF07681	DoxX	0.85
PF03480	DctP	0.85
PF03060	NMO	0.85
PF00041	fn3	0.85
PF00211	Guanylate_cyc	0.85
PF00754	F5_F8_type_C	0.85
PF04909	Amidohydro_2	0.85
PF07589	PEP-CTERM	0.85
PF13649	Methyltransf_25	0.85
PF01068	DNA_ligase_A_M	0.85
PF00561	Abhydrolase_1	0.85
PF01925	TauE	0.43
PF07603	DUF1566	0.43
PF17164	DUF5122	0.43
PF11752	DUF3309	0.43
PF10415	FumaraseC_C	0.43
PF14350	Beta_protein	0.43
PF13592	HTH_33	0.43
PF00772	DnaB	0.43
PF12680	SnoaL_2	0.43
PF02374	ArsA_ATPase	0.43
PF00903	Glyoxalase	0.43
PF10115	HlyU	0.43
PF13472	Lipase_GDSL_2	0.43
PF13602	ADH_zinc_N_2	0.43
PF00892	EamA	0.43
PF14659	Phage_int_SAM_3	0.43
PF01575	MaoC_dehydratas	0.43
PF07992	Pyr_redox_2	0.43
PF00486	Trans_reg_C	0.43
PF04226	Transgly_assoc	0.43
PF13701	DDE_Tnp_1_4	0.43
PF01494	FAD_binding_3	0.43
PF02698	DUF218	0.43
PF03886	ABC_trans_aux	0.43
PF00848	Ring_hydroxyl_A	0.43
PF13551	HTH_29	0.43
PF01695	IstB_IS21	0.43
PF01551	Peptidase_M23	0.43
PF02824	TGS	0.43
PF02417	Chromate_transp	0.43
PF13751	DDE_Tnp_1_6	0.43
PF00037	Fer4	0.43
PF12681	Glyoxalase_2	0.43
PF16861	Carbam_trans_C	0.43
PF01699	Na_Ca_ex	0.43
PF13531	SBP_bac_11	0.43
PF07690	MFS_1	0.43
PF03400	DDE_Tnp_IS1	0.43
PF01244	Peptidase_M19	0.43
PF03088	Str_synth	0.43
PF03928	HbpS-like	0.43
PF00326	Peptidase_S9	0.43
PF05494	MlaC	0.43
PF13282	DUF4070	0.43

COG ID	Name	Functional Category	% Frequency in 234 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	5.56
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.85
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	0.85
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.85
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.85
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.85
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.85
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.85
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.85
COG4638	Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit	Inorganic ion transport and metabolism [P]	0.85
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.43
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.43
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.43
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.43
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.43
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.43
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.43
COG1434	Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family	Cell wall/membrane/envelope biogenesis [M]	0.43
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.43
COG1662	Transposase and inactivated derivatives, IS1 family	Mobilome: prophages, transposons [X]	0.43
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	0.43
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.43
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	0.43
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.43
COG2949	Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin	Cell wall/membrane/envelope biogenesis [M]	0.43
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.43

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.83 %
Unclassified	root	N/A	40.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.40 %
Unclassified	root	N/A	40.17 %
Viruses	superkingdom	All Organisms → Viruses	0.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.40 %
Unclassified	root	N/A	40.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.17 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	23.08 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.13 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.56 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.43 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.17 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	23.08 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.71 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.43 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	0.43 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.43 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.43 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.43 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.17 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	23.08 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.43 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.43 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.43 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.43 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.43 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.43 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.43 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	0.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.43 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.85 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.17 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	21.37 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.43 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	0.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.43 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.43 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	0.43 %
Phycisphaerales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales	0.43 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.43 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.43 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.43 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.17 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	21.37 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.43 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.43 %
unclassified Phycisphaerales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales	0.43 %
Thiorhodovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiorhodovibrio	0.43 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.43 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.43 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	0.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.43 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.43 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.17 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	21.37 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	0.43 %
unclassified Thiorhodovibrio	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiorhodovibrio → unclassified Thiorhodovibrio	0.43 %
Phycisphaerales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	0.43 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.43 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.43 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.43 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	0.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.43 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.43 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.17 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	21.37 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	0.43 %
Thiorhodovibrio sp. 970	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiorhodovibrio → unclassified Thiorhodovibrio → Thiorhodovibrio sp. 970	0.43 %
Phycisphaerales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	0.43 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.43 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.43 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.43 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	0.43 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.43 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.43 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0913505	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100780334	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1120	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105731267	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1365	Open in IMG/M
3300000443\|F12B_11447871	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	846	Open in IMG/M
3300000559\|F14TC_101030464	All Organisms → cellular organisms → Bacteria	1577	Open in IMG/M
3300000955\|JGI1027J12803_105432850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1148	Open in IMG/M
3300000956\|JGI10216J12902_112882057	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300001431\|F14TB_100585160	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300002912\|JGI25386J43895_10045691	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1270	Open in IMG/M
3300004281\|Ga0066397_10112909	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300004479\|Ga0062595_102025770	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300004633\|Ga0066395_10016602	All Organisms → cellular organisms → Bacteria	2848	Open in IMG/M
3300004633\|Ga0066395_10336420	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	835	Open in IMG/M
3300005174\|Ga0066680_10041258	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2670	Open in IMG/M
3300005174\|Ga0066680_10636375	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300005179\|Ga0066684_10196782	All Organisms → cellular organisms → Bacteria	1302	Open in IMG/M
3300005180\|Ga0066685_11061744	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300005332\|Ga0066388_100659961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1659	Open in IMG/M
3300005332\|Ga0066388_101008841	All Organisms → cellular organisms → Bacteria	1395	Open in IMG/M
3300005332\|Ga0066388_103799837	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300005445\|Ga0070708_100172403	All Organisms → cellular organisms → Bacteria	2020	Open in IMG/M
3300005467\|Ga0070706_100521446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1105	Open in IMG/M
3300005467\|Ga0070706_101343547	Not Available	655	Open in IMG/M
3300005468\|Ga0070707_100346242	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1444	Open in IMG/M
3300005471\|Ga0070698_100117626	All Organisms → cellular organisms → Bacteria → Proteobacteria	2620	Open in IMG/M
3300005549\|Ga0070704_101406449	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300005552\|Ga0066701_10041711	All Organisms → cellular organisms → Bacteria → Proteobacteria	2467	Open in IMG/M
3300005552\|Ga0066701_10195813	All Organisms → cellular organisms → Bacteria	1237	Open in IMG/M
3300005557\|Ga0066704_10198450	Not Available	1356	Open in IMG/M
3300005558\|Ga0066698_11110031	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300005598\|Ga0066706_11478206	Not Available	512	Open in IMG/M
3300005713\|Ga0066905_101043507	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	723	Open in IMG/M
3300005713\|Ga0066905_102322862	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	502	Open in IMG/M
3300005764\|Ga0066903_100021424	All Organisms → cellular organisms → Bacteria	6910	Open in IMG/M
3300006034\|Ga0066656_10233518	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300006058\|Ga0075432_10224659	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300006196\|Ga0075422_10612425	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300006796\|Ga0066665_10154917	All Organisms → cellular organisms → Bacteria	1742	Open in IMG/M
3300006844\|Ga0075428_100141901	All Organisms → cellular organisms → Bacteria	2611	Open in IMG/M
3300006852\|Ga0075433_10022296	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5315	Open in IMG/M
3300006852\|Ga0075433_10265499	All Organisms → cellular organisms → Bacteria	1521	Open in IMG/M
3300006852\|Ga0075433_10474912	Not Available	1102	Open in IMG/M
3300006852\|Ga0075433_10991111	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300006853\|Ga0075420_101050265	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	701	Open in IMG/M
3300006854\|Ga0075425_100004474	All Organisms → cellular organisms → Bacteria	14429	Open in IMG/M
3300006854\|Ga0075425_101343584	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	810	Open in IMG/M
3300006871\|Ga0075434_100723035	All Organisms → Viruses → Predicted Viral	1013	Open in IMG/M
3300006876\|Ga0079217_10711253	Not Available	678	Open in IMG/M
3300007076\|Ga0075435_100064534	All Organisms → cellular organisms → Bacteria → Proteobacteria	2976	Open in IMG/M
3300007076\|Ga0075435_101156640	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	677	Open in IMG/M
3300007265\|Ga0099794_10423987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	696	Open in IMG/M
3300009012\|Ga0066710_100317202	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2291	Open in IMG/M
3300009038\|Ga0099829_10117199	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2092	Open in IMG/M
3300009089\|Ga0099828_10838923	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300009100\|Ga0075418_10160461	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2393	Open in IMG/M
3300009100\|Ga0075418_10346275	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1586	Open in IMG/M
3300009100\|Ga0075418_11223112	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300009147\|Ga0114129_10322829	All Organisms → cellular organisms → Bacteria	2052	Open in IMG/M
3300009147\|Ga0114129_10371437	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1890	Open in IMG/M
3300009147\|Ga0114129_10411932	Not Available	1779	Open in IMG/M
3300009147\|Ga0114129_13146761	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	538	Open in IMG/M
3300009162\|Ga0075423_11336675	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	766	Open in IMG/M
3300010046\|Ga0126384_10139663	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1851	Open in IMG/M
3300010046\|Ga0126384_12087056	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	544	Open in IMG/M
3300010047\|Ga0126382_11863989	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300010320\|Ga0134109_10111494	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	960	Open in IMG/M
3300010336\|Ga0134071_10547939	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300010359\|Ga0126376_10019595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4402	Open in IMG/M
3300010359\|Ga0126376_10319308	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1360	Open in IMG/M
3300010359\|Ga0126376_10352545	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300010359\|Ga0126376_10939339	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300010360\|Ga0126372_11569280	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	696	Open in IMG/M
3300010362\|Ga0126377_10351464	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1471	Open in IMG/M
3300010362\|Ga0126377_10514343	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1231	Open in IMG/M
3300010362\|Ga0126377_11970594	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300010362\|Ga0126377_13200095	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	529	Open in IMG/M
3300010362\|Ga0126377_13329678	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	519	Open in IMG/M
3300010376\|Ga0126381_101062829	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1169	Open in IMG/M
3300010398\|Ga0126383_11650121	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300012204\|Ga0137374_10335674	All Organisms → cellular organisms → Bacteria	1225	Open in IMG/M
3300012204\|Ga0137374_11000742	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	604	Open in IMG/M
3300012205\|Ga0137362_10303257	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1383	Open in IMG/M
3300012208\|Ga0137376_11664082	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300012211\|Ga0137377_11488130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	603	Open in IMG/M
3300012359\|Ga0137385_11546417	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300012582\|Ga0137358_10670953	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300012685\|Ga0137397_11138465	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	566	Open in IMG/M
3300012948\|Ga0126375_11690006	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300012972\|Ga0134077_10085245	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1207	Open in IMG/M
3300012976\|Ga0134076_10057265	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1481	Open in IMG/M
3300013306\|Ga0163162_11618289	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	739	Open in IMG/M
3300014326\|Ga0157380_12817509	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300015053\|Ga0137405_1366488	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1787	Open in IMG/M
3300015245\|Ga0137409_10207682	All Organisms → cellular organisms → Bacteria	1760	Open in IMG/M
3300015264\|Ga0137403_10874608	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	750	Open in IMG/M
3300015373\|Ga0132257_100432565	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1604	Open in IMG/M
3300015373\|Ga0132257_103961187	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300015374\|Ga0132255_100125972	All Organisms → cellular organisms → Bacteria	3531	Open in IMG/M
3300017997\|Ga0184610_1225859	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300018053\|Ga0184626_10024840	All Organisms → cellular organisms → Bacteria	2451	Open in IMG/M
3300018063\|Ga0184637_10195171	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1242	Open in IMG/M
3300018431\|Ga0066655_10995718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	579	Open in IMG/M
3300021560\|Ga0126371_12215264	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300025910\|Ga0207684_10044358	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3770	Open in IMG/M
3300025910\|Ga0207684_11008712	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300025923\|Ga0207681_11459780	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300025938\|Ga0207704_11739921	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300026309\|Ga0209055_1145433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	833	Open in IMG/M
3300026313\|Ga0209761_1035460	All Organisms → cellular organisms → Bacteria → Proteobacteria	2942	Open in IMG/M
3300026331\|Ga0209267_1063691	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1628	Open in IMG/M
3300026332\|Ga0209803_1014760	All Organisms → cellular organisms → Bacteria	3998	Open in IMG/M
3300026332\|Ga0209803_1243221	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	624	Open in IMG/M
3300026342\|Ga0209057_1224652	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300026529\|Ga0209806_1030341	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2690	Open in IMG/M
3300026538\|Ga0209056_10390423	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	869	Open in IMG/M
3300026552\|Ga0209577_10581419	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300027384\|Ga0209854_1101826	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300027646\|Ga0209466_1022335	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300027748\|Ga0209689_1017119	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	4583	Open in IMG/M
3300027874\|Ga0209465_10072074	All Organisms → cellular organisms → Bacteria	1675	Open in IMG/M
3300027874\|Ga0209465_10384867	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	702	Open in IMG/M
3300027907\|Ga0207428_10934937	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300027907\|Ga0207428_11206886	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300027957\|Ga0209857_1059255	Not Available	665	Open in IMG/M
3300028819\|Ga0307296_10534913	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	641	Open in IMG/M
3300031226\|Ga0307497_10329916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	709	Open in IMG/M
3300031561\|Ga0318528_10202760	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1061	Open in IMG/M
3300031713\|Ga0318496_10265474	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300031720\|Ga0307469_10640444	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300031720\|Ga0307469_11387884	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	670	Open in IMG/M
3300031723\|Ga0318493_10872677	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300031740\|Ga0307468_100243923	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1257	Open in IMG/M
3300031740\|Ga0307468_100288386	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1183	Open in IMG/M
3300031770\|Ga0318521_10558091	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300031792\|Ga0318529_10147037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1083	Open in IMG/M
3300031805\|Ga0318497_10503701	Not Available	678	Open in IMG/M
3300031820\|Ga0307473_10122562	All Organisms → cellular organisms → Bacteria	1429	Open in IMG/M
3300031820\|Ga0307473_10779139	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300031820\|Ga0307473_11076124	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300031832\|Ga0318499_10023493	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2169	Open in IMG/M
3300031845\|Ga0318511_10551127	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	535	Open in IMG/M
3300031897\|Ga0318520_10022476	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3033	Open in IMG/M
3300031941\|Ga0310912_10780939	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300032013\|Ga0310906_10008532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiorhodovibrio → unclassified Thiorhodovibrio → Thiorhodovibrio sp. 970	3784	Open in IMG/M
3300032052\|Ga0318506_10426613	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300032180\|Ga0307471_101224596	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	914	Open in IMG/M
3300032205\|Ga0307472_100167419	All Organisms → cellular organisms → Bacteria	1629	Open in IMG/M
3300033289\|Ga0310914_10411059	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1225	Open in IMG/M
3300033811\|Ga0364924_022762	Not Available	1246	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.91%
Host-Associated	Host-Associated	17.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.06%
Plants	Host-Associated → Plants	17.09%
Aquatic	Environmental → Aquatic	3.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.10%
Sediment	Environmental → Aquatic → Sediment	3.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.99%
Freshwater	Environmental → Aquatic → Freshwater	0.43%
Floodplain	Environmental → Terrestrial → Floodplain	0.43%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.68%
Loam	Environmental → Terrestrial → Soil → Loam	11.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.42%
Sand	Environmental → Terrestrial → Soil → Sand	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.28%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.43%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.43%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.43%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.49%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.42%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.71%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.28%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.43%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.43%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.43%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	17.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.24%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.40%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.71%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.71%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.85%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.43%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.43%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.43%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027384	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027957	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_09135053	2228664022	Soil	YTSGMEHSPTSATGTAWERTPWHAVRNAAWDALKRD
INPhiseqgaiiFebDRAFT_1007803341	3300000364	Soil	YTTGMEHSPTSAMGTGWERTPWRAVQGAARDALKAG*
INPhiseqgaiiFebDRAFT_1057312673	3300000364	Soil	FYTTGMEHSPTSATGTAWERTPWHATQKAAWDALKRAHTS*
F12B_114478711	3300000443	Soil	FYTTGMEHSPTSATGSAWERTPWHAVQGAAREALNNDKTTA*
F14TC_1004193712	3300000559	Soil	TSGMEHSPTSATGTAWERTPWLATQRAAWEVLRK*
F14TC_1010304641	3300000559	Soil	TGMEHSPTSATGTGWQRTPWHATQRAAWETLRHADVSD*
JGI1027J12803_1054328503	3300000955	Soil	TFYTTGMEHSPTSATGTGWERTPRHATQRAAWESLRQQLFGA*
JGI10216J12902_1128820571	3300000956	Soil	TFYTTGMEHSPTSATGTGWEPTPWHATQRAAWEVLKKGSTA*
F14TB_1005851601	3300001431	Soil	TTGMEHSPTSATGTAWEPTPWQAVQGAARDALKRALIGPL*
JGI25386J43895_100456911	3300002912	Grasslands Soil	YTSGMEHSPTSAMGTAWELTPXHAVQRAACEALKRSXIGG*
Ga0066397_101129091	3300004281	Tropical Forest Soil	TFYTTGMEHSPTSATGTAWEPTPWRATQRAAWEALSRKKS*
Ga0062595_1020257701	3300004479	Soil	ATFYTTGMEHSPTSVTGTGWEPTPWHATQQAAWEALRKSKED*
Ga0066395_100166023	3300004633	Tropical Forest Soil	MFYTTGMEHSPMSATGTEWERTSWRATQRAAWEALKRMLEKC*
Ga0066395_103364202	3300004633	Tropical Forest Soil	MFYTTGMEHSRTSATGTARERTPWDATQRAAWEALERADRQ*
Ga0066680_100412581	3300005174	Soil	LARDFYTTGMEHSPTSATGTGWERSAWHATQRAAWEALKKASG*
Ga0066680_106363752	3300005174	Soil	RATFYTTGMEHSPTSATGTGWERTPWHATQRAAWEALRKVKAAR*
Ga0066684_101967822	3300005179	Soil	MSGMEHSLTRATGTAWERTPWRAVQGAAREALKQAGRDG*
Ga0066685_110617442	3300005180	Soil	TFYTTGMEHSPTSATGTAWERTPWHATQRAAWEALRNAEATR*
Ga0066388_1006599613	3300005332	Tropical Forest Soil	TFYTTGMEHSPTSATGIAWEPTAWHATQRAAWGALNKPNDDHK*
Ga0066388_1010088411	3300005332	Tropical Forest Soil	ASRATFYTTGMEHSPTSTTGTAWERTPWHAVQRAAWGVLEKADGGS*
Ga0066388_1037998373	3300005332	Tropical Forest Soil	ATFYTTGMEHSPTSATGTGWEPTPWHTTQRAAWEALKRTECRDL*
Ga0070708_1001724032	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MEHLPTSATGTGWERTPWHAAQSAPARLARSHGGGRNVELADAV
Ga0070706_1005214463	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MFYTTAIEHSPTSATGTGWERTPWHATQRAAWEALKKADTSG*
Ga0070706_1013435471	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	ATFYATGMEHSPTSATGSAWERTSWHATQRAAWEARKRMETV*
Ga0070707_1003462421	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MFYTTGVEHSPTSATGTGWERAPWHATQRAAWEALRQVSAVGQG
Ga0070698_1001176262	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTGMEHSPTSATGTGWERTPWHAVQRAAWEALRKHLDETV*
Ga0070704_1014064491	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	RCHRAGTEMEHSPTSATGTAWERTPWHSTQRAAWAVLKKADT*
Ga0066701_100324381	3300005552	Soil	MEHSPTSATGTGWERTPWHATQRAAWEALRQANRDG*
Ga0066701_100417111	3300005552	Soil	FYTTGMEHSITSATGTGWERTPWRAVQGAAREALKKQEPTR*
Ga0066701_100700924	3300005552	Soil	MEHSPTSATGTGWERTPWHATQRAAWEALKKGEESKG*
Ga0066701_101958134	3300005552	Soil	ATFYTSGMEHSPTSATGSAWERTPWHAVQGAAGDALRRASRDG*
Ga0066661_100016973	3300005554	Soil	MEHSPATGTGWERTPWHATQRAAWEALPKTEEGDR*
Ga0066661_101770393	3300005554	Soil	MEHSPTGATGTGWERTPWHATQRAAWEALKKAESGS*
Ga0066707_107737542	3300005556	Soil	MEHSPMSATGTGWERTPWHATQRAAWEALKKGEESKG*
Ga0066704_100816832	3300005557	Soil	MEHSPTSATGTGWERTPSHATQRAAWEALKQAEMS*
Ga0066704_101984501	3300005557	Soil	FYTTGVEHSPTSATGTAWERTPWHAVRRAAWEALKKVEPSG*
Ga0066698_111100312	3300005558	Soil	ATFYTTGMEHSPTSATGAGWERTRWHATQRAAAWEALERAGETD*
Ga0066699_110452213	3300005561	Soil	HSLTSATGTAWERTPWRAVQGAAREAFTHMEATR*
Ga0066706_114782061	3300005598	Soil	YTSGMEHSPTSATGTGWERTPWHATQRAAWEALKKAGAGG*
Ga0066905_1001114882	3300005713	Tropical Forest Soil	MEHLPTSATGTAWEQTPWHATQRAAWEALKRTEEIACYHPK*
Ga0066905_1010435072	3300005713	Tropical Forest Soil	YTTGMEHSPTRATGSGRDRTPWRATQKAVWEVLRR*
Ga0066905_1023228621	3300005713	Tropical Forest Soil	VTRSRKRATFYTTGMEPSAVSATGTAWERTPWHATQRAAWKAL
Ga0066903_1000214245	3300005764	Tropical Forest Soil	MFYTSWMEHSPTSATGTAWERTPWRAAQRAAWEASRNHEKVTQ*
Ga0066903_1019131132	3300005764	Tropical Forest Soil	MEHSPTSATGTAWEPTPWRATQRAAWEALDRESRS*
Ga0066696_108041133	3300006032	Soil	HSLTSATGTAWEPTPWRAVQGAAREAFTHMEATR*
Ga0066656_102335185	3300006034	Soil	FYTTGMEHSPTSATGTGWERAPWHAVQSAARHALTQGSRDA*
Ga0066656_103431661	3300006034	Soil	MEHSPTSATGTGWERTPWHATQRAAGAALKQAEMS*
Ga0075432_102246592	3300006058	Populus Rhizosphere	AYTIGIEHSPTSATGIGWERTPWQATRLAAWEVLIRLEGR*
Ga0075422_101292481	3300006196	Populus Rhizosphere	TGMEHSPTSATGTGWVRTPWHATQRAVWEALKKTPESESG*
Ga0075422_106124251	3300006196	Populus Rhizosphere	ATFYTTGMEHSPTSATGTGWEPTPWHATLRAASEVLKKAEEGER*
Ga0066665_100587144	3300006796	Soil	MNPPTSATGTGWERTPWHATQRAAWGALKQAEMS*
Ga0066665_101549171	3300006796	Soil	YTTGMEHSPTSATGTGWERTPWRATQRAAWDALKKAEPSG*
Ga0066660_101606581	3300006800	Soil	MEHSPTSATGTGWERSAWHATQRAAWEALKKASG*
Ga0075428_1001419015	3300006844	Populus Rhizosphere	LEATFYTTGMEHSPTRDRDGWERTLWHTTKRAALEVLKKGSTA*
Ga0075433_100222962	3300006852	Populus Rhizosphere	MEHAATSATGTGWEPKPWQATQRAAWEALSRVND*
Ga0075433_100292538	3300006852	Populus Rhizosphere	MEYSPAGATGTGWERTPWHATQRAAWEAVMKSEEGNR*
Ga0075433_102654994	3300006852	Populus Rhizosphere	MSLTTGVEHSPTSATGTSWERTPWHATQRAPWEALSRVND*
Ga0075433_104749121	3300006852	Populus Rhizosphere	YVSGMEYSPAGATGTGWERTPWHATQRAARKALRKAG*
Ga0075433_109911111	3300006852	Populus Rhizosphere	FYTTGMEHSPTSATGTGWERTPWHAVQVAAWDTLRRRSI*
Ga0075433_112373013	3300006852	Populus Rhizosphere	TGMEHSPTSATGTGWERTPWHATQRAVWEALKKTPESESG*
Ga0075420_1010502651	3300006853	Populus Rhizosphere	RRATFYTTGIGHSATSATGTGWESTPWHATQRAAWEVLKKAEEGER*
Ga0075425_1000044745	3300006854	Populus Rhizosphere	MRATFYTTGVEHSPTRGTGTGWERTPWHATQRAAWEALKKA*
Ga0075425_1013435843	3300006854	Populus Rhizosphere	FYTTGMEHSPTSATGTGWERTPWHATQRAAWEALKKAEPSG*
Ga0075434_1007230352	3300006871	Populus Rhizosphere	MFYTTAIEHSRTGATGTGWEPTPWRATQRAAWGTLKRVDG*
Ga0079217_107112532	3300006876	Agricultural Soil	MEHSATSAIGSAWEKTPWRAVQRAAWAALNTPQPSQPGA*
Ga0075429_1000564493	3300006880	Populus Rhizosphere	MEHSPTNATGTGWARTPWHATQRAAWEALRRAADG*
Ga0075419_104035361	3300006969	Populus Rhizosphere	MEYSPAGATGTGWERTPWHATQQAAWEALDRAHRP*
Ga0075435_1000645344	3300007076	Populus Rhizosphere	MGVAGMEHSPTSATGTGWERTAWHAVQRAAWDALRKDDG*
Ga0075435_1011566401	3300007076	Populus Rhizosphere	TTGMEHSPTSATGTGSERTPWHATQRAAWDALTRAE*
Ga0099794_101907571	3300007265	Vadose Zone Soil	TTGMEHSITSATPSVWERTPWHATQRAAWEALRTAK*
Ga0099794_104239872	3300007265	Vadose Zone Soil	MEHSPTGAIGTAWERTPWRVVQSAAWEALKKVSV*
Ga0066710_1001834843	3300009012	Grasslands Soil	MEHSPTSATGTGWEGTPWHATPRAAWEALRQISTVE
Ga0066710_1003172021	3300009012	Grasslands Soil	ATFYTTGMEHSPTSATGTGWERTPWHATQQAAWEAVRKVEREA
Ga0066710_1046336052	3300009012	Grasslands Soil	MEHSPTSATGTGWEPTPWHAVQRAAWEALKKAEEGNR
Ga0099829_101171997	3300009038	Vadose Zone Soil	ATFYTTGIEHSITSATASAWERTPWHSTQRAAWEALRKAGAGVGEMSE*
Ga0099828_108389231	3300009089	Vadose Zone Soil	MEHSITSATASAWERTPWHAVQGAARDALRQAERSR*
Ga0099828_111688093	3300009089	Vadose Zone Soil	GMEHSPSSATGTGWERTPWHAVQGAARDALRQTKKGD*
Ga0075418_101604617	3300009100	Populus Rhizosphere	YTTGMEHLPTSATGTAWERTLWQAVQRSAWQALKKAETG*
Ga0075418_103462754	3300009100	Populus Rhizosphere	YVSGMEYSPAGATGTGWERTPWHATQRAAWEAVMKSEEGNR*
Ga0075418_112231122	3300009100	Populus Rhizosphere	ATVYTTGMEHSPTSATGTGWERTPWRATQRAPWEALNRTNRQ*
Ga0066709_1019608561	3300009137	Grasslands Soil	MEHSPTSATGTGWERTPWQTVQKAAREFLKASLDG*
Ga0114129_103228293	3300009147	Populus Rhizosphere	RYEERGWRATFYTIGMEHSPWERTPWHATQRAAWEALKKARG*
Ga0114129_103714372	3300009147	Populus Rhizosphere	MAATFYTSEMEHSPTSATGTGWKRTPWHVTQRAAWEALKRTDA*
Ga0114129_104119325	3300009147	Populus Rhizosphere	MTFSVIDHSPTSATDTRGSARRGTATQRAAWKALKKAEPSG*
Ga0114129_112388981	3300009147	Populus Rhizosphere	MEHSPTSATGTGWERTPWHATQRAAWKALMRVENYVR*
Ga0114129_122640803	3300009147	Populus Rhizosphere	SPTSATGTGWERTPWQATQRAAWEALRQAEYECHIA*
Ga0114129_131467611	3300009147	Populus Rhizosphere	TFYTTGMEHSPTSATGTGWERTPWHATQRAAWEALKKADDTQ*
Ga0075423_113366753	3300009162	Populus Rhizosphere	YTTGMEHSPTSATGTAFERTPWQATQRAAWEALKKALKP*
Ga0105249_105557173	3300009553	Switchgrass Rhizosphere	MRRDMEHSLTSAIGTGWELTPWHATQRATWEAVKRN*
Ga0105072_11359581	3300009818	Groundwater Sand	EHSITSATASAWERTPWHATQRAAWEVLKKIWEVQ*
Ga0126384_101396631	3300010046	Tropical Forest Soil	TFYTTGMEHSPVSAIGTGWEPTPWRAVQRAAWEALKSVDSIGG*
Ga0126384_120870561	3300010046	Tropical Forest Soil	TFYTTGMEHSPTSATGTAWERTPWHATQRAAWEAAKKTQDDIR*
Ga0126382_101203701	3300010047	Tropical Forest Soil	EHSPTSATGTAWERTAWRATLRAAWEALKRAEWVG*
Ga0126382_118639892	3300010047	Tropical Forest Soil	YTTGMEHSPTSATGTGWERTPWQATRHAAWEALENADGRS*
Ga0134109_101114941	3300010320	Grasslands Soil	TFHKSEMGHSRTSATGTAWERTPWRAVHRAAWEALKRT*
Ga0134071_100024921	3300010336	Grasslands Soil	MSGMEHSPTSATGTAWEPMPWRAVQGAAWGTLRAEE
Ga0134071_105479391	3300010336	Grasslands Soil	MFYTTAIEHSPTSATGAGWERTPWRATQRAAWEALKKTEDEIR*
Ga0126376_100195952	3300010359	Tropical Forest Soil	MTGERATFYTTGMEHSPTSATGTGLRRTPWHAVQRAAWEALDRTGRP*
Ga0126376_103193081	3300010359	Tropical Forest Soil	MFYTTGMEHSRTSATGTARERTPWDATQPAAWEALERADRQ*
Ga0126376_103525451	3300010359	Tropical Forest Soil	TFYTTGMEHSPISATATAWEQTPWHATQRAAWEALDRAHRQ*
Ga0126376_109393393	3300010359	Tropical Forest Soil	MKVGVEHSPTSATGTGWEPTPWHATQRAAWEALKKAEEGDR*
Ga0126372_115692801	3300010360	Tropical Forest Soil	MAGYTTGIEHSPTTVTGTTWEPTPWHATQRATWEVLKRAEYGG*
Ga0126377_100499585	3300010362	Tropical Forest Soil	MEHSPTSATGTAWERPTWHAAQRAAWGALATAEASG*
Ga0126377_103514644	3300010362	Tropical Forest Soil	SDHPATFNVTGRAHSGIGGTAWERTPWRATQRAAWEALD*
Ga0126377_105143432	3300010362	Tropical Forest Soil	MFYTTGMEHSRTSATGTAWERTPWDATQRAAWEALERADRQ*
Ga0126377_119705941	3300010362	Tropical Forest Soil	FYTTGMEHSPTSATGTAWERAPWRATQRAAWEGLKNSETNC*
Ga0126377_132000951	3300010362	Tropical Forest Soil	WRATLYATGMEHSPTSATGTAWERTPWHAVQWAAWGALKKSEA*
Ga0126377_133296783	3300010362	Tropical Forest Soil	YTTGMEPSPSSVTGTGYEPTPWHATSRAAWEVLKKADSIGR*
Ga0126381_1010628293	3300010376	Tropical Forest Soil	FYTTGMEHSPTSATGTASERTPWRATQRAAWGALKNADQREG*
Ga0126383_110962023	3300010398	Tropical Forest Soil	MEHSPTSATGTAWERTPWRATQRAAWEALKQTVSET*
Ga0126383_116501211	3300010398	Tropical Forest Soil	FYTTGMEHSPTSVTGTAWERTPWHATQRAAWEALKKGDA*
Ga0134122_116574021	3300010400	Terrestrial Soil	MEHSPTSATGTGWERTPWHATQRAVWEALKKTPESESG*
Ga0137392_111025002	3300011269	Vadose Zone Soil	MEHSITRATASAWERTPWHAVQGAAREALRKAGDD*
Ga0137388_116934001	3300012189	Vadose Zone Soil	MEHSITSATASAWERTPWHAVQGAARDALRQATAGG*
Ga0137382_113497181	3300012200	Vadose Zone Soil	TTGMEHSPTSATGTGGERAPWHATQRAAREALGRGD*
Ga0137363_104708141	3300012202	Vadose Zone Soil	MEHSPTSATGTGWERTPWHATQRAAWAVLKKADT*
Ga0137363_115222941	3300012202	Vadose Zone Soil	GMEHSPTSATGTGWERTPWHPTQRAAWEALKNAEAIYR*
Ga0137374_103356744	3300012204	Vadose Zone Soil	MEHSITSATASAWKRTPWHATQRAAWEALVKAEE*
Ga0137374_110007421	3300012204	Vadose Zone Soil	MEHSITSATASAWEHTPWHAVQGAAWEALKRASERE*
Ga0137362_100160177	3300012205	Vadose Zone Soil	MEHSPMSATGTGWERTPWHAKQRAAWEALKKGEESKG*
Ga0137362_101051464	3300012205	Vadose Zone Soil	MEHSPPGATGTGWERTPWHATQRAAWDALMKKDAR*
Ga0137362_103032571	3300012205	Vadose Zone Soil	TFYTTGMEHSPTSATGTGWERTPWHATQRAAWEALKQAGANNA*
Ga0137380_103546051	3300012206	Vadose Zone Soil	MEHSITSATASAWERTPWHAIQGAARDTLRQVSRDG*
Ga0137376_116640821	3300012208	Vadose Zone Soil	GLARDFYTTGMEHSPTSATGTGWERSAWHATQRAAWEALKKASG*
Ga0137378_109295002	3300012210	Vadose Zone Soil	FYTTGMEHSITSATASAWERTPWHAVQRAAWEALSRVND*
Ga0137377_114881301	3300012211	Vadose Zone Soil	TTGMEHSPMGATGTSWERTPWHATQRAAWDALTKAEIGAEHS*
Ga0137387_105621722	3300012349	Vadose Zone Soil	YTTGMEHSITSATASALERTLWRAVQGAARDALRAAGY*
Ga0137386_107920711	3300012351	Vadose Zone Soil	HSITSATASAWERAPWHAVQGAAREALRLANRDG*
Ga0137369_101029373	3300012355	Vadose Zone Soil	MEHSITSATASAWERTPWHAVQGAARDALRQAEELEH*
Ga0137369_104337091	3300012355	Vadose Zone Soil	TFYTTGMEHSITSATASAWERTPWHAFQGAARDVLRKVEAR*
Ga0137369_108523933	3300012355	Vadose Zone Soil	GMEHSITSATASAWERTPWHAVQGAARDALRQAEAGDR*
Ga0137385_115464172	3300012359	Vadose Zone Soil	EVLYAVRTGMEHSPTRATGTGSERTPWHATQRAAWEALKKNEEDDR*
Ga0137390_102074951	3300012363	Vadose Zone Soil	TGMEHSATSATGTGWERTPWHATQRAAREALKKIDA*
Ga0137358_106709531	3300012582	Vadose Zone Soil	TFYTTGMEHSPTTATGTGWERTPWHAVQRAAWEVLRRSDNYPHLG*
Ga0137358_108537691	3300012582	Vadose Zone Soil	MEHLPTSATGTAWERTPWHATQRAAWEALKKADVA*
Ga0137397_111384651	3300012685	Vadose Zone Soil	TFYTTGMEHSPTSATGTAWERTPWHATQRAALEALTKGTEPEGETR*
Ga0137404_113242711	3300012929	Vadose Zone Soil	TGMEHSPTSATGTGWERTPWHATQRAAGAALKKAESSP*
Ga0137404_118795852	3300012929	Vadose Zone Soil	EHSPTSATGTGWERTPWHATQGAAWEALRRANSDG*
Ga0126375_112339851	3300012948	Tropical Forest Soil	TTGMEHSPTSATGIARHRTPWHATQRAAGEALKHAAEGSRAG*
Ga0126375_116900061	3300012948	Tropical Forest Soil	SGCMAMGIEHSPRSATGTGWEPTPWHATQRAAWEALKRPETS*
Ga0126369_108778571	3300012971	Tropical Forest Soil	KVGVEHSPTSATGTGWEPTRWHATQRAAWEALALK*
Ga0134077_100852452	3300012972	Grasslands Soil	FYTPGMEHSPTSATGTGWERTPWHATQRAAWETLKKAETNYL*
Ga0134076_100572651	3300012976	Grasslands Soil	GMEHSPTSATGTAWKPLPWRAVQRAAWEALRQISTVE*
Ga0163162_116182893	3300013306	Switchgrass Rhizosphere	MSLTTGMEYSPTSATGTGWERTPWHATQRAPWEALRKVDVA*
Ga0157380_128175092	3300014326	Switchgrass Rhizosphere	VSFYTTGLEHSPTSATGTAWERTPWRATQRAAWEA
Ga0137405_13664881	3300015053	Vadose Zone Soil	SLCSSYTTGMEHSPTSATGTGWERTPWHATQRAAWEALKKADAGG*
Ga0137420_15004409	3300015054	Vadose Zone Soil	MEHSPTGATGTGWERTPWHGTQRAAWEALKKAETS*
Ga0137409_102076823	3300015245	Vadose Zone Soil	MRATFYTTRMEHSIMSATASAWERTPWHATQRAAWEALKKAEAP*
Ga0137403_108746083	3300015264	Vadose Zone Soil	ATFYTTGMEHSPTSATGTGWERTPWHATQRAAWEALKKAEAP*
Ga0132258_109059581	3300015371	Arabidopsis Rhizosphere	LSPSSATGTGWERTPWHATQSEAWEALKKAEPSG*
Ga0132257_1004325655	3300015373	Arabidopsis Rhizosphere	MERSPTSAIGTGRERTPWHATQRAAWEALNKGEP*
Ga0132257_1039611872	3300015373	Arabidopsis Rhizosphere	YVSGMEYSPAGATGTGWERTPWHATQRAAWGALKKTD*
Ga0132255_1001259721	3300015374	Arabidopsis Rhizosphere	GMEHSATSATRTAWERTPCHATQRAAWEALRQAG*
Ga0134083_101100972	3300017659	Grasslands Soil	MEHSPTSATGTGWERTPWHATQRAAWEALKKVEESKG
Ga0184610_12258592	3300017997	Groundwater Sediment	FYTTGMEHSITSATGTGWERTPWHAVQGAAREALSRSEVGDR
Ga0184638_10679715	3300018052	Groundwater Sediment	RATFYTTGMEHSITSATASAWERTPWHAVQGAARDALRRAE
Ga0184626_100248402	3300018053	Groundwater Sediment	MEHSITSATASAWERTPWHATQRAAWEALRKAGEE
Ga0184637_101951712	3300018063	Groundwater Sediment	ATFYTTGMEHSITSATASAWERTPWHAVQGAARDALRQAEGGR
Ga0184609_103083762	3300018076	Groundwater Sediment	EHSITSATASAWERTPWHSVQSAAWDALSKAEESR
Ga0184609_105028821	3300018076	Groundwater Sediment	TFYTTGMEHSITSATASAWERTPWHAVQVAAREALRQTEEGSDD
Ga0184612_103869731	3300018078	Groundwater Sediment	TTGMEHSITSATASAWERTSWHAVQGAARDALRQAEELEH
Ga0184629_104440492	3300018084	Groundwater Sediment	YTSGMNHSITSATASAWERTPWHAVQGAARDALNKTAENRG
Ga0066655_109957181	3300018431	Grasslands Soil	RRATFYTMGMEHSPRSATGTAWERMPRQAVQGAARAALRKAAE
Ga0184646_11216821	3300019259	Groundwater Sediment	TTGMEHSPTSATGTGWERTPWHATKRAAWEALKGG
Ga0126371_122152642	3300021560	Tropical Forest Soil	AGLEHSPTSATGTAWCRTPWRETQRAAWGALKKAEA
Ga0207684_100443586	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MEHSPTSATGTGWERTPWHATQRAAWEALKKGEESKG
Ga0207684_110087122	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	GMEHSPTSATGAGWERTRWHATQRAAAWEALERAGETD
Ga0207646_100524896	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MEHSPTSATGTGWERTPWHATQRAAWEALKKGEES
Ga0207646_114769761	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MEHSPTSATGTGWERTPWHATQRAAWEALKKMEDA
Ga0207681_114597801	3300025923	Switchgrass Rhizosphere	ATFYTTGMEHSPTSATGTAWEPTPWQAVQGAARDALKRALIGPL
Ga0207704_117399212	3300025938	Miscanthus Rhizosphere	MGYSPTSATGTAWERTPWHATQRAAWEALRQAERIESLRALRRP
Ga0207648_108819732	3300026089	Miscanthus Rhizosphere	MEHSPTSATGTGWERTPWQATQRAAWEALKTAEESEPTG
Ga0209235_10888182	3300026296	Grasslands Soil	MEHSPMSATGTGWERTPWHATQRAAWEALKKGEESKG
Ga0209237_10054681	3300026297	Grasslands Soil	IEHSITSATALVWERTPWRAIQVAARDAQRKAEESNR
Ga0209055_100360612	3300026309	Soil	MEHSPTGATGTGWERTPWHATQRAAWEALKKAESGS
Ga0209055_11454331	3300026309	Soil	RTFYTTGMEHSATSAIGTGWERTPWHATQRAAWEALGRVND
Ga0209761_10354601	3300026313	Grasslands Soil	GRRATFYTTGMEHSPTSATGTGWERTPWHATQRAAWEALRKVKAAR
Ga0209470_12170721	3300026324	Soil	TGMEHSITSATASAWERTPWHAVQGAARDALKRAE
Ga0209267_10636914	3300026331	Soil	RATFYTTGMEHSPTSATGTGWERTPWHATQRAAWEALKKAATSG
Ga0209803_10147601	3300026332	Soil	TTGMEHSPTGATGTGWERTPWHATQRAAWEALKKAESGS
Ga0209803_12432212	3300026332	Soil	TFYTTGMEHSPTSATGTGWERTPWHATQRAAWAVLKKADT
Ga0209057_12246521	3300026342	Soil	ATFYTTGMEHSPTSATGAGWERTRWHATQRAAAWEALERAGETD
Ga0209690_10984563	3300026524	Soil	MEHSPTSTTGTAWECTPWHATQRAAREALKKAETS
Ga0209806_10303416	3300026529	Soil	VRAIFYTTWMEHSPTSATGTGWERTPWHATQRAAWEALKKGEESKG
Ga0209056_103904231	3300026538	Soil	ATFYTTGMEHSLTSATGTGWERTPWHATQRAAWEALKRSDRSG
Ga0209156_100958743	3300026547	Soil	EHSLTRATGTAWERTPWHAVQGAAREALKQAGRDG
Ga0209577_105814191	3300026552	Soil	GTEHSPTSATGSAWEPTPWRAVQGAARDALKRANVDG
Ga0209854_10141013	3300027384	Groundwater Sand	GMEHSPAGATGSAWERTPWHATQRAAWEALRKVSAT
Ga0209854_11018262	3300027384	Groundwater Sand	VRATFYVTGMEHSPTSATGTGWERTAWHATQRAAWTAL
Ga0209466_10223353	3300027646	Tropical Forest Soil	MEHSPTSATGTAWERTAWRATLRAAWEALKRAEWVG
Ga0209588_11269431	3300027671	Vadose Zone Soil	TGMEHSITSATASAWERTPWHAVQGAARDALRQATAGG
Ga0209689_10171198	3300027748	Soil	TFYTTGMEHSPTSATGTGWERTPWHATQRAAWEALKKAEPSG
Ga0209701_101939552	3300027862	Vadose Zone Soil	GMEHSITSATGTGWERTPWHAVQGAARDALRQAAGRDR
Ga0209465_100720741	3300027874	Tropical Forest Soil	MFYTTGMEHSPMSATGTEWERTSWRATQRAAWEALKRMLEKC
Ga0209465_103848672	3300027874	Tropical Forest Soil	MFYTTGMEHSRTSATGTARERTPWDATQRAAWEALERADRQ
Ga0209488_101781742	3300027903	Vadose Zone Soil	MEHSPTGATGTGWERTPWHATQRAAWEALRKAEKDSR
Ga0207428_109349372	3300027907	Populus Rhizosphere	AYTIGIEHSPTSATGIGWERTPWQATRLAAWEVLIRLEGR
Ga0207428_112068862	3300027907	Populus Rhizosphere	FYTTAMEHSATSAIGTGWEPTPWHATQRAAWEALKKLQP
Ga0209857_10592553	3300027957	Groundwater Sand	MTQMEHAPTRATGFAWERTLWHATQRAAWEALKKAEPSG
Ga0307296_105349133	3300028819	Soil	TFYTTGMEHSITSATASAWERTPSHAVPGAARDALRQRQ
Ga0307497_103299162	3300031226	Soil	MTFYATDMEHSPTSATGTGWARTPWHATQRAAWEALKKIES
Ga0318528_102027603	3300031561	Soil	YTTGMEHSLTSATGTAWERTPWHATQRAAREALKRADASG
Ga0318496_102654741	3300031713	Soil	YTTGMEHSPASATGTGWELTPWHATQRAAWAILGAR
Ga0307469_104622953	3300031720	Hardwood Forest Soil	MEHSPTSATGTGWERTPWHATQRAAWETLKKMSATNY
Ga0307469_106404442	3300031720	Hardwood Forest Soil	MTGKEHSHTSATGTPWERTPWHAVQQAAWEALDRASPPIV
Ga0307469_113878842	3300031720	Hardwood Forest Soil	FFANTTGMEHSPTSATGTGWERTPWHATQRVAWGALKKAEEGS
Ga0318493_108726773	3300031723	Soil	MFAFRNPGRATLYTMGMEHSPTSATGTAWERTPWRAAQRAALEALKRADA
Ga0307468_1002439233	3300031740	Hardwood Forest Soil	VSFSTTGLEHSLTSATGTVWERTLWRAMQRGVWEALKKASTSA
Ga0307468_1002883863	3300031740	Hardwood Forest Soil	MAATFYTSEMEHSPTSATGTGWKRTPWHVTQRAAWEALKRTDA
Ga0307468_1009643622	3300031740	Hardwood Forest Soil	TGMEHSPTSATGTGWERTPWRATQRAAWEVLKKGSTA
Ga0307468_1017082681	3300031740	Hardwood Forest Soil	IEHSPTRAAGTAWECTPWHMTQRAAWEAVKKNEEDDR
Ga0307468_1019686242	3300031740	Hardwood Forest Soil	GMEHSPTSATGTAWERTPWHATQRAVGEALKKASG
Ga0318521_105580911	3300031770	Soil	MSPTLVREPFHTTGMEHSPTSATGTAWKRTPWRATQRAAWKVLEKTE
Ga0318529_101470373	3300031792	Soil	FYTTGMEHSPTSATSTAWERTPWHATQRAAWEAMTKDNDRISWAG
Ga0318497_105037013	3300031805	Soil	TFYTTGMEHSPSPTGATGTGWERTPWRATQRVAWEVLTKGNQDG
Ga0318497_108866041	3300031805	Soil	TTGMEDSPTSATGTAWERMPWHATQRAAWEALRGGKLTTGYDL
Ga0307473_101225621	3300031820	Hardwood Forest Soil	TFYTTGMEHSPTSATGTGWERTPWHATQRAAWEALDRAHRP
Ga0307473_107791391	3300031820	Hardwood Forest Soil	LDATFYTMGIRTLPPSVTGTGWEPTPWHATQRAVWEASRKSI
Ga0307473_109427551	3300031820	Hardwood Forest Soil	VTFYTTGMEHSITSATRTGRERTPWHATQRAACEALKKAV
Ga0307473_110761241	3300031820	Hardwood Forest Soil	FYTTGMEHSPTSATGTAWERTPWHATQRGAWEALEIG
Ga0318499_100234931	3300031832	Soil	YTTGMEHSPTSATGTAWEGTRWRATQRAAWEALSKGEDR
Ga0318517_101244441	3300031835	Soil	EHSPVSATGTAWEATPWRATQRAAWEALKRVLEKC
Ga0318511_105511272	3300031845	Soil	FYTTGMEHSPASATGTGWELTPWHATQRAAWAILGAR
Ga0318520_100224766	3300031897	Soil	TFYTTGMEHSPTSATGTAWEGTRWRATQRAAWEALSKGEDR
Ga0310912_107809392	3300031941	Soil	ATFYTTGMEHSPASATGTGWELTPWHATQRAAWAILGAR
Ga0310906_100085326	3300032013	Soil	YTTGMEHSPTSATGTAWERMPWQATQRAGWEALRNAEGIE
Ga0318545_103886842	3300032042	Soil	TGMEHSPTSATGTAWEGTRWRATQRAAWEALSKGEDR
Ga0318506_104266132	3300032052	Soil	MFYTTGMEHSPTSATGTAWDRTPWRATQRAAWGALTAMAQMEQ
Ga0307471_1012245961	3300032180	Hardwood Forest Soil	GWRATFHTTGMEHSQTSATGTGWEGTPWHATQRAAWEALRKAK
Ga0307471_1015843672	3300032180	Hardwood Forest Soil	TGMEHSPTSATGIGWERTPWHATQRAAWDALKKAETS
Ga0307472_1001674193	3300032205	Hardwood Forest Soil	YTTGIEHSPTSATGTAWERTPWGATQRAAWEVLRRMEKDIQ
Ga0307472_1025387311	3300032205	Hardwood Forest Soil	TEHSPTSATGTGWERTPWRATQRAAWEALRRAEAPLQ
Ga0310914_104110591	3300033289	Soil	YTMGMEHSPTSATGTAWERTPWRAAQRAALEALKRADA
Ga0364924_022762_1118_1246	3300033811	Sediment	ATFYPTGMEHSITSATASAWERTPWHAVQGAARDALRQEARQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F018559

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences