Metagenome / Metatranscriptome Family F022958

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F022958
Family Type	Metagenome / Metatranscriptome
Number of Sequences	212
Average Sequence Length	46 residues
Representative Sequence	MSYLLQVANQRPMLRVTGEVLLAFCCAAPLVLALSSFVAYGLHSLTH
Number of Associated Samples	121
Number of Associated Scaffolds	212

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	71.56 %
% of genes near scaffold ends (potentially truncated)	45.28 %
% of genes from short scaffolds (< 2000 bps)	83.49 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (75.472 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.226 % of family members)
Environment Ontology (ENVO)	Unclassified (39.623 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.906 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.33% β-sheet: 0.00% Coil/Unstructured: 42.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 212 Family Scaffolds
PF02678	Pirin	3.30
PF13417	GST_N_3	2.36
PF01068	DNA_ligase_A_M	1.89
PF04392	ABC_sub_bind	1.42
PF02481	DNA_processg_A	1.42
PF04226	Transgly_assoc	0.94
PF02954	HTH_8	0.94
PF00589	Phage_integrase	0.94
PF09851	SHOCT	0.94
PF03734	YkuD	0.94
PF02934	GatB_N	0.47
PF10011	DUF2254	0.47
PF04828	GFA	0.47
PF10686	YAcAr	0.47
PF13577	SnoaL_4	0.47
PF00723	Glyco_hydro_15	0.47
PF00216	Bac_DNA_binding	0.47
PF02254	TrkA_N	0.47
PF13365	Trypsin_2	0.47
PF00072	Response_reg	0.47
PF14520	HHH_5	0.47
PF02211	NHase_beta	0.47
PF13458	Peripla_BP_6	0.47
PF00873	ACR_tran	0.47
PF01520	Amidase_3	0.47
PF00027	cNMP_binding	0.47
PF14067	LssY_C	0.47
PF01751	Toprim	0.47
PF00982	Glyco_transf_20	0.47
PF01740	STAS	0.47
PF00211	Guanylate_cyc	0.47
PF08308	PEGA	0.47

COG ID	Name	Functional Category	% Frequency in 212 Family Scaffolds
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	3.30
COG0758	Predicted Rossmann fold nucleotide-binding protein DprA/Smf involved in DNA uptake	Replication, recombination and repair [L]	2.83
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.89
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.89
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.42
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.94
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.94
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.94
COG0064	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	Translation, ribosomal structure and biogenesis [J]	0.47
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	0.47
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.47
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	0.47
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.47
COG2511	Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain	Translation, ribosomal structure and biogenesis [J]	0.47
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.47
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.47

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.47 %
All Organisms	root	All Organisms	24.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.47 %
cellular organisms	root	All Organisms → cellular organisms	24.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.47 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	24.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.47 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13.21 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.47 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.08 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.42 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.47 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.42 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.42 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.47 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.77 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.42 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.42 %
Aquabacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium	0.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.47 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.42 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.42 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.42 %
Aquabacterium olei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium olei	0.47 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	0.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.47 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.42 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.42 %
Bradyrhizobium sp. CCGUVB23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	0.94 %
Bradyrhizobium sp. WSM3983	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	0.47 %
Aquabacterium olei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium olei	0.47 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	0.47 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000699\|JGI12536J11923_103964	Not Available	519	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10099965	Not Available	612	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1038168	Not Available	506	Open in IMG/M
3300003505\|JGIcombinedJ51221_10004672	Not Available	4054	Open in IMG/M
3300003505\|JGIcombinedJ51221_10016018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2553	Open in IMG/M
3300004633\|Ga0066395_10033609	All Organisms → cellular organisms → Bacteria	2159	Open in IMG/M
3300004633\|Ga0066395_10133683	Not Available	1238	Open in IMG/M
3300004633\|Ga0066395_10331143	Not Available	841	Open in IMG/M
3300005332\|Ga0066388_100098426	All Organisms → cellular organisms → Bacteria	3380	Open in IMG/M
3300005332\|Ga0066388_100595518	Not Available	1729	Open in IMG/M
3300005332\|Ga0066388_100624763	Not Available	1696	Open in IMG/M
3300005332\|Ga0066388_100726669	Not Available	1596	Open in IMG/M
3300005332\|Ga0066388_101632896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	1136	Open in IMG/M
3300005332\|Ga0066388_101782370	Not Available	1094	Open in IMG/M
3300005332\|Ga0066388_102394486	Not Available	957	Open in IMG/M
3300005332\|Ga0066388_103575017	Not Available	793	Open in IMG/M
3300005332\|Ga0066388_103990948	Not Available	752	Open in IMG/M
3300005332\|Ga0066388_105231524	Not Available	658	Open in IMG/M
3300005332\|Ga0066388_106998929	Not Available	567	Open in IMG/M
3300005332\|Ga0066388_108759798	Not Available	502	Open in IMG/M
3300005363\|Ga0008090_14345600	Not Available	551	Open in IMG/M
3300005363\|Ga0008090_15589473	Not Available	565	Open in IMG/M
3300005435\|Ga0070714_102252584	Not Available	530	Open in IMG/M
3300005436\|Ga0070713_100063118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Aquabacterium → Aquabacterium olei	3104	Open in IMG/M
3300005437\|Ga0070710_10547671	Not Available	798	Open in IMG/M
3300005451\|Ga0066681_10171519	Not Available	1286	Open in IMG/M
3300005569\|Ga0066705_10532658	Not Available	731	Open in IMG/M
3300005764\|Ga0066903_100146486	Not Available	3377	Open in IMG/M
3300005764\|Ga0066903_100202457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2973	Open in IMG/M
3300005764\|Ga0066903_100855568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	1637	Open in IMG/M
3300005764\|Ga0066903_101949911	Not Available	1126	Open in IMG/M
3300005764\|Ga0066903_102777497	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300005764\|Ga0066903_106053680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	633	Open in IMG/M
3300005764\|Ga0066903_106943708	Not Available	587	Open in IMG/M
3300005764\|Ga0066903_108006091	Not Available	542	Open in IMG/M
3300005764\|Ga0066903_108075075	Not Available	539	Open in IMG/M
3300006032\|Ga0066696_10156457	Not Available	1425	Open in IMG/M
3300006047\|Ga0075024_100056123	All Organisms → cellular organisms → Bacteria → Proteobacteria	1654	Open in IMG/M
3300006052\|Ga0075029_100106159	Not Available	1691	Open in IMG/M
3300006057\|Ga0075026_100331535	Not Available	839	Open in IMG/M
3300006057\|Ga0075026_100898932	Not Available	544	Open in IMG/M
3300006057\|Ga0075026_101039003	Not Available	512	Open in IMG/M
3300006059\|Ga0075017_100108491	All Organisms → cellular organisms → Bacteria	1940	Open in IMG/M
3300006102\|Ga0075015_100081099	Not Available	1599	Open in IMG/M
3300006172\|Ga0075018_10819241	Not Available	512	Open in IMG/M
3300006174\|Ga0075014_100334603	Not Available	808	Open in IMG/M
3300006175\|Ga0070712_100743477	Not Available	839	Open in IMG/M
3300006755\|Ga0079222_10048064	Not Available	1962	Open in IMG/M
3300006755\|Ga0079222_10220718	Not Available	1161	Open in IMG/M
3300006806\|Ga0079220_10038470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2177	Open in IMG/M
3300006954\|Ga0079219_10590640	Not Available	809	Open in IMG/M
3300007076\|Ga0075435_101420324	Not Available	608	Open in IMG/M
3300009792\|Ga0126374_10004738	All Organisms → cellular organisms → Bacteria → Proteobacteria	4691	Open in IMG/M
3300009792\|Ga0126374_10256455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1145	Open in IMG/M
3300010048\|Ga0126373_10004074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11097	Open in IMG/M
3300010048\|Ga0126373_10098161	All Organisms → cellular organisms → Bacteria	2703	Open in IMG/M
3300010359\|Ga0126376_12970793	Not Available	524	Open in IMG/M
3300010360\|Ga0126372_10293537	Not Available	1424	Open in IMG/M
3300010360\|Ga0126372_12893735	Not Available	532	Open in IMG/M
3300010360\|Ga0126372_13066871	Not Available	518	Open in IMG/M
3300010361\|Ga0126378_10792679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1057	Open in IMG/M
3300010366\|Ga0126379_10513757	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300010366\|Ga0126379_10654557	Not Available	1141	Open in IMG/M
3300010376\|Ga0126381_100121657	All Organisms → cellular organisms → Bacteria	3379	Open in IMG/M
3300010376\|Ga0126381_103169636	Not Available	651	Open in IMG/M
3300012677\|Ga0153928_1120575	Not Available	509	Open in IMG/M
3300012948\|Ga0126375_10804097	Not Available	745	Open in IMG/M
3300012948\|Ga0126375_10922120	Not Available	704	Open in IMG/M
3300012971\|Ga0126369_10164715	All Organisms → cellular organisms → Bacteria	2101	Open in IMG/M
3300015371\|Ga0132258_10376210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3521	Open in IMG/M
3300016270\|Ga0182036_10439597	Not Available	1023	Open in IMG/M
3300016270\|Ga0182036_10948146	Not Available	707	Open in IMG/M
3300016270\|Ga0182036_11867375	Not Available	509	Open in IMG/M
3300016319\|Ga0182033_10608597	Not Available	950	Open in IMG/M
3300016319\|Ga0182033_10666570	Not Available	909	Open in IMG/M
3300016341\|Ga0182035_10304748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1308	Open in IMG/M
3300016341\|Ga0182035_12023070	Not Available	523	Open in IMG/M
3300016341\|Ga0182035_12091209	Not Available	514	Open in IMG/M
3300016357\|Ga0182032_10270537	Not Available	1329	Open in IMG/M
3300016357\|Ga0182032_10581229	Not Available	930	Open in IMG/M
3300016357\|Ga0182032_11060474	Not Available	694	Open in IMG/M
3300016357\|Ga0182032_11678282	Not Available	554	Open in IMG/M
3300016371\|Ga0182034_10153941	Not Available	1731	Open in IMG/M
3300016371\|Ga0182034_10251858	All Organisms → cellular organisms → Bacteria	1394	Open in IMG/M
3300016371\|Ga0182034_11078608	Not Available	696	Open in IMG/M
3300016387\|Ga0182040_11561833	Not Available	561	Open in IMG/M
3300016404\|Ga0182037_11769366	Not Available	552	Open in IMG/M
3300016422\|Ga0182039_10662789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	917	Open in IMG/M
3300016422\|Ga0182039_10855171	Not Available	810	Open in IMG/M
3300016445\|Ga0182038_10154207	Not Available	1757	Open in IMG/M
3300017822\|Ga0187802_10000157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15669	Open in IMG/M
3300017822\|Ga0187802_10021287	Not Available	2233	Open in IMG/M
3300017822\|Ga0187802_10030554	All Organisms → cellular organisms → Bacteria	1909	Open in IMG/M
3300017823\|Ga0187818_10042619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1950	Open in IMG/M
3300017927\|Ga0187824_10015754	Not Available	2204	Open in IMG/M
3300017927\|Ga0187824_10065181	Not Available	1138	Open in IMG/M
3300017933\|Ga0187801_10278434	Not Available	677	Open in IMG/M
3300017936\|Ga0187821_10024995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2094	Open in IMG/M
3300017936\|Ga0187821_10061879	Not Available	1350	Open in IMG/M
3300017943\|Ga0187819_10077518	All Organisms → cellular organisms → Bacteria	1982	Open in IMG/M
3300017943\|Ga0187819_10446908	Not Available	740	Open in IMG/M
3300017959\|Ga0187779_10142370	Not Available	1473	Open in IMG/M
3300017966\|Ga0187776_10928197	Not Available	634	Open in IMG/M
3300017994\|Ga0187822_10062845	Not Available	1069	Open in IMG/M
3300018006\|Ga0187804_10343966	Not Available	655	Open in IMG/M
3300018006\|Ga0187804_10363099	Not Available	637	Open in IMG/M
3300018058\|Ga0187766_10027986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3257	Open in IMG/M
3300020150\|Ga0187768_1061541	Not Available	839	Open in IMG/M
3300020580\|Ga0210403_10156500	All Organisms → cellular organisms → Bacteria → Proteobacteria	1864	Open in IMG/M
3300020581\|Ga0210399_10075797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983	2727	Open in IMG/M
3300021420\|Ga0210394_10081803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2790	Open in IMG/M
3300021420\|Ga0210394_11014975	Not Available	718	Open in IMG/M
3300021560\|Ga0126371_10006636	All Organisms → cellular organisms → Bacteria → Proteobacteria	10309	Open in IMG/M
3300021560\|Ga0126371_10056222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3780	Open in IMG/M
3300021560\|Ga0126371_10064369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3547	Open in IMG/M
3300021560\|Ga0126371_10659018	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300021560\|Ga0126371_10967866	Not Available	994	Open in IMG/M
3300021560\|Ga0126371_13059583	Not Available	566	Open in IMG/M
3300022510\|Ga0242652_1015183	Not Available	779	Open in IMG/M
3300025905\|Ga0207685_10827655	Not Available	511	Open in IMG/M
3300025915\|Ga0207693_10163469	Not Available	1752	Open in IMG/M
3300025915\|Ga0207693_10891216	Not Available	683	Open in IMG/M
3300025915\|Ga0207693_11442378	Not Available	510	Open in IMG/M
3300025929\|Ga0207664_11146045	Not Available	694	Open in IMG/M
3300026824\|Ga0207723_116541	Not Available	566	Open in IMG/M
3300026847\|Ga0207802_1021917	Not Available	551	Open in IMG/M
3300026852\|Ga0207838_104887	Not Available	750	Open in IMG/M
3300026896\|Ga0207730_1023928	Not Available	521	Open in IMG/M
3300026910\|Ga0207840_1009737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1027	Open in IMG/M
3300026927\|Ga0207744_1021712	Not Available	599	Open in IMG/M
3300026979\|Ga0207817_1014118	Not Available	889	Open in IMG/M
3300027680\|Ga0207826_1014579	Not Available	2140	Open in IMG/M
3300027725\|Ga0209178_1024507	All Organisms → cellular organisms → Bacteria → Proteobacteria	1887	Open in IMG/M
3300027765\|Ga0209073_10215548	Not Available	735	Open in IMG/M
3300027787\|Ga0209074_10012890	Not Available	2114	Open in IMG/M
3300027787\|Ga0209074_10016321	Not Available	1939	Open in IMG/M
3300027874\|Ga0209465_10026610	All Organisms → cellular organisms → Bacteria	2701	Open in IMG/M
3300027898\|Ga0209067_10143978	Not Available	1262	Open in IMG/M
3300027911\|Ga0209698_10301814	Not Available	1267	Open in IMG/M
3300027915\|Ga0209069_10057192	All Organisms → cellular organisms → Bacteria → Proteobacteria	1839	Open in IMG/M
3300027986\|Ga0209168_10120429	Not Available	1344	Open in IMG/M
3300031474\|Ga0170818_107259653	Not Available	1390	Open in IMG/M
3300031474\|Ga0170818_112411869	Not Available	550	Open in IMG/M
3300031543\|Ga0318516_10452692	Not Available	738	Open in IMG/M
3300031544\|Ga0318534_10198859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1157	Open in IMG/M
3300031545\|Ga0318541_10284676	Not Available	921	Open in IMG/M
3300031545\|Ga0318541_10552346	Not Available	644	Open in IMG/M
3300031545\|Ga0318541_10804787	Not Available	524	Open in IMG/M
3300031564\|Ga0318573_10454532	Not Available	689	Open in IMG/M
3300031564\|Ga0318573_10505914	Not Available	650	Open in IMG/M
3300031573\|Ga0310915_10212260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1356	Open in IMG/M
3300031573\|Ga0310915_10298913	Not Available	1137	Open in IMG/M
3300031573\|Ga0310915_10897653	Not Available	621	Open in IMG/M
3300031640\|Ga0318555_10778614	Not Available	516	Open in IMG/M
3300031719\|Ga0306917_10195917	All Organisms → cellular organisms → Bacteria	1527	Open in IMG/M
3300031744\|Ga0306918_10086997	All Organisms → cellular organisms → Bacteria	2190	Open in IMG/M
3300031744\|Ga0306918_10329901	Not Available	1180	Open in IMG/M
3300031744\|Ga0306918_10739666	Not Available	769	Open in IMG/M
3300031744\|Ga0306918_11160051	Not Available	597	Open in IMG/M
3300031744\|Ga0306918_11407043	Not Available	534	Open in IMG/M
3300031747\|Ga0318502_10731196	Not Available	599	Open in IMG/M
3300031753\|Ga0307477_10012738	Not Available	5754	Open in IMG/M
3300031753\|Ga0307477_10166602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1536	Open in IMG/M
3300031753\|Ga0307477_10818313	Not Available	618	Open in IMG/M
3300031780\|Ga0318508_1109540	Not Available	771	Open in IMG/M
3300031780\|Ga0318508_1221411	Not Available	543	Open in IMG/M
3300031781\|Ga0318547_10248021	Not Available	1073	Open in IMG/M
3300031781\|Ga0318547_10990306	Not Available	525	Open in IMG/M
3300031796\|Ga0318576_10430849	Not Available	623	Open in IMG/M
3300031819\|Ga0318568_10388108	Not Available	870	Open in IMG/M
3300031833\|Ga0310917_10565343	Not Available	773	Open in IMG/M
3300031833\|Ga0310917_10751006	Not Available	660	Open in IMG/M
3300031879\|Ga0306919_10527833	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300031890\|Ga0306925_10061513	Not Available	3937	Open in IMG/M
3300031890\|Ga0306925_10341460	Not Available	1608	Open in IMG/M
3300031890\|Ga0306925_11833770	Not Available	579	Open in IMG/M
3300031897\|Ga0318520_10557089	Not Available	711	Open in IMG/M
3300031897\|Ga0318520_10592017	Not Available	689	Open in IMG/M
3300031910\|Ga0306923_10651396	All Organisms → cellular organisms → Bacteria → Proteobacteria	1177	Open in IMG/M
3300031910\|Ga0306923_11851005	Not Available	618	Open in IMG/M
3300031912\|Ga0306921_10137605	Not Available	2852	Open in IMG/M
3300031912\|Ga0306921_10475647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1454	Open in IMG/M
3300031912\|Ga0306921_11024407	Not Available	930	Open in IMG/M
3300031912\|Ga0306921_11059308	Not Available	911	Open in IMG/M
3300031912\|Ga0306921_11379505	Not Available	776	Open in IMG/M
3300031912\|Ga0306921_11573717	Not Available	715	Open in IMG/M
3300031942\|Ga0310916_10065146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2832	Open in IMG/M
3300031942\|Ga0310916_10865037	Not Available	759	Open in IMG/M
3300031945\|Ga0310913_11152221	Not Available	541	Open in IMG/M
3300031946\|Ga0310910_10203055	Not Available	1538	Open in IMG/M
3300031947\|Ga0310909_10893656	Not Available	730	Open in IMG/M
3300031954\|Ga0306926_10713316	Not Available	1215	Open in IMG/M
3300031954\|Ga0306926_12509998	Not Available	565	Open in IMG/M
3300031959\|Ga0318530_10141372	Not Available	975	Open in IMG/M
3300031962\|Ga0307479_10123578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2527	Open in IMG/M
3300031962\|Ga0307479_11342385	Not Available	675	Open in IMG/M
3300032001\|Ga0306922_12013368	Not Available	562	Open in IMG/M
3300032035\|Ga0310911_10906227	Not Available	508	Open in IMG/M
3300032041\|Ga0318549_10319088	Not Available	700	Open in IMG/M
3300032041\|Ga0318549_10509596	Not Available	541	Open in IMG/M
3300032052\|Ga0318506_10472587	Not Available	556	Open in IMG/M
3300032059\|Ga0318533_10696319	Not Available	746	Open in IMG/M
3300032060\|Ga0318505_10444382	Not Available	613	Open in IMG/M
3300032089\|Ga0318525_10508058	Not Available	617	Open in IMG/M
3300032094\|Ga0318540_10256649	Not Available	844	Open in IMG/M
3300032094\|Ga0318540_10357269	Not Available	706	Open in IMG/M
3300032094\|Ga0318540_10418944	Not Available	647	Open in IMG/M
3300032261\|Ga0306920_100307914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2358	Open in IMG/M
3300032261\|Ga0306920_104134707	Not Available	524	Open in IMG/M
3300032261\|Ga0306920_104308491	Not Available	511	Open in IMG/M
3300033290\|Ga0318519_10163616	Not Available	1251	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.58%
Host-Associated	Host-Associated	1.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.32%
Aquatic	Environmental → Aquatic	12.26%
Plants	Host-Associated → Plants	0.94%
Fungi	Host-Associated → Fungi	0.47%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.32%
Freshwater	Environmental → Aquatic → Freshwater	6.60%
Sediment	Environmental → Aquatic → Sediment	5.66%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.47%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.47%
Mycelium	Host-Associated → Fungi → Mycelium	0.47%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.21%
Loam	Environmental → Terrestrial → Soil → Loam	21.23%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.47%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.47%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.23%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.25%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.42%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.47%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.47%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.38%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.60%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.30%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.94%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.47%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.47%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.47%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.47%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000699	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 79	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012677	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ012 MetaG	Host-Associated	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022510	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026824	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 27 (SPAdes)	Environmental	Open in IMG/M
3300026847	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 20 (SPAdes)	Environmental	Open in IMG/M
3300026852	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 62 (SPAdes)	Environmental	Open in IMG/M
3300026896	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 71 (SPAdes)	Environmental	Open in IMG/M
3300026910	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 65 (SPAdes)	Environmental	Open in IMG/M
3300026927	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 56 (SPAdes)	Environmental	Open in IMG/M
3300026979	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12536J11923_1039642	3300000699	Tropical Forest Soil	MNYLLQVAKHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLHSLTH*
AF_2010_repII_A001DRAFT_100999653	3300000793	Forest Soil	MSYLRNIAVQRPMLRVTGEVLLAFCCAAPLVLALTSLVAYGLHSLTH*
AF_2010_repII_A10DRAFT_10381681	3300000816	Forest Soil	QRPMLRVAGEVVVVFCFAAPLVLAFSSFVAYGLHSLTH*
JGIcombinedJ51221_100046722	3300003505	Forest Soil	MSYLRNIAIQRPMLRVTGEVVLVFCCSAPLVLAFSSFIAYGLHSLSH*
JGIcombinedJ51221_100160182	3300003505	Forest Soil	MSYLTNIANQRPMLRVTGEVFLVFCCAAPLVLAFSSFVAYGLHSLSH*
Ga0066395_100336094	3300004633	Tropical Forest Soil	MSYLAGVANQRPLLRITAQVLLAFCCAAPLVLAFSSFVAYGVHTLMH*
Ga0066395_101336832	3300004633	Tropical Forest Soil	MSYLSHVVNQRPMLRVAGEVLLAFCCAAPLVLAFSSFVAAGVHSLTH*
Ga0066395_103311432	3300004633	Tropical Forest Soil	LRGVTRLAEQTEKGAERQMSHLLQVANQRPMLRVAGEVVVVFCFAAPLVLAFSSFVAYGLHSLTQ*
Ga0066388_1000984262	3300005332	Tropical Forest Soil	MSYLYNVANQRPMLRLTVEVTLAFCCAAPVVLLISSVVAYGVRALTH*
Ga0066388_1005955183	3300005332	Tropical Forest Soil	MSYLRNIAIQRPMLRVTGEVLLAFCCAAPLVLALTSFVASGLHSLSH*
Ga0066388_1006247633	3300005332	Tropical Forest Soil	MNYLLQVANQRPMLRVAAEVVVAFCFAAPLVLAFSSVVAYGLHSLTH*
Ga0066388_1007266692	3300005332	Tropical Forest Soil	MSYLLQVANQRPMLRVAAEVVVVFCFAAPLVLAFSSVVAYGLHSLTH*
Ga0066388_1016328965	3300005332	Tropical Forest Soil	VSRRPGVKRQMSYLLQVANQRPMLRVTGEVLLAFCCAAPLVLAFSGLGASGLHSLTH*
Ga0066388_1017823701	3300005332	Tropical Forest Soil	MSYLLQVANQRPMLRVTGEVILAFCCAAPLVLVFSSLVAYGLQSVTH*
Ga0066388_1023944861	3300005332	Tropical Forest Soil	MNYLLQVANQRPMLRVTAEVVVVFCCAAPLVLAFSSFVAYGLHSLTH*
Ga0066388_1035750171	3300005332	Tropical Forest Soil	MSYLLQVANQRPMLRVAAEVVAVFCFAAPLVLAFSSVVAYGLHSLTH*
Ga0066388_1039909481	3300005332	Tropical Forest Soil	MSYLSHVVSQRPMLRVTGEVLLAFCCAAPLVLAFTSFVAYALQ
Ga0066388_1052315241	3300005332	Tropical Forest Soil	MSYLTGVANQRPLLRITAQVLLAFCCAAPLVLAFSSFVAYGVHTLMH*
Ga0066388_1069989291	3300005332	Tropical Forest Soil	AERQMSHLLQVANQRPMLRVAGEVVVVFCFAAPLVLAFSSFVAYGLHSLTQ*
Ga0066388_1087597981	3300005332	Tropical Forest Soil	MSYLLRVANQRPMLRVAGEVLLVFCCAAPLVLALTGLVAYGLHSLGN*
Ga0008090_143456001	3300005363	Tropical Rainforest Soil	LSEVANQRPMVRVTAQVLLAFCCAAPLVLAFSSFVAYGVHTLMH*
Ga0008090_155894731	3300005363	Tropical Rainforest Soil	LRGVTRLAEQTEKGAERQMSHLLQVANQRPMLRVAGEVVVVFCFAAPLVLAFSSFVAYGLHSLTH*
Ga0070714_1022525841	3300005435	Agricultural Soil	MSYLSDVTTQRPMFRITAGVFLAFCCAAPLVLAFSSAVAYGVHLLIH*
Ga0070713_1000631185	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSYLTKIASHRSMIRVTAEVLLAFCCAAPLVLAFTSLVAYGLHSLTN*
Ga0070710_105476711	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSYLSHVVSLRPMLRVTGEVLLAFCCAAPLVLAFTSFVAY
Ga0066681_101715191	3300005451	Soil	MSYLLQVTNQRPMLRVTAKFFRILLAAPLVLAFSSLVAFGLQSVTH*
Ga0066705_105326581	3300005569	Soil	MSYPLNVASQRPMVRLAVQVILAFCCAAPLVLLLSSVVAYGVHT
Ga0066903_1001464862	3300005764	Tropical Forest Soil	MSYLLQVANHRPMLRVTAEVVLVFCCAAPLVLAFSSFVAYGLHSLTH*
Ga0066903_1002024578	3300005764	Tropical Forest Soil	MSYLRNIANQRPMVRISAEVVLAFCCAAPLVLAFTSFVAYGLHSLTH*
Ga0066903_1008555681	3300005764	Tropical Forest Soil	VSRRPGVKRQMSYLLQVANQRPMLRVTGEVLLAFCCAAPLVLAFSGLVASGLHSLTH*
Ga0066903_1019499113	3300005764	Tropical Forest Soil	MSYLLQVANQRPMLRVTGEVLLAFCCAALLVLAFSSLVAYGLHSVTH*
Ga0066903_1027774972	3300005764	Tropical Forest Soil	MSYLSDVTHRRPMFRITAEVFLAFCCAAPLVLAFSSLVAYGVHSLMH*
Ga0066903_1060536802	3300005764	Tropical Forest Soil	MNYLLQVAKHRPMLRVTGQVLLAFCCAAPPVLALSSFVAYGLHSLTH*
Ga0066903_1069437081	3300005764	Tropical Forest Soil	QRPLLRITAQVLLAFCCAAPLVLAFSSVVAYGVHTLMH*
Ga0066903_1080060911	3300005764	Tropical Forest Soil	ERQMSYLSDVTSRRPMFRITAGVVLAFCCAAPLVLAFSTVVAYGVHLLIH*
Ga0066903_1080750751	3300005764	Tropical Forest Soil	MSYLAGVANQRPLLRITAQVLLAFCCAAPLVLAFSSVVAYGVH
Ga0066696_101564573	3300006032	Soil	MSYPLNVASQRPMVRLAVQVILAFCCAAPLVLLLSSVVAYGVHTLVH*
Ga0075024_1000561233	3300006047	Watersheds	MSYLRNIAIQRPMLRVTGEVLLAFCCAAPLVFAFSSFVAYGLYSLSH*
Ga0075029_1001061592	3300006052	Watersheds	MSYLTDVANQRPLLRITAQVLLAFCCAAPLVLAFSSFVAYGVHALMH*
Ga0075026_1003315351	3300006057	Watersheds	HKGWERQMSYLRNIAIQRPMLRVTGEVLLVFCCAAPLVLAFSSFVTYDLHSLSH*
Ga0075026_1008989321	3300006057	Watersheds	MSYLRNIAIQRPMLRVTGEVLLAFCCAAPLVLAFTSFVAYGLHSLTH*
Ga0075026_1010390031	3300006057	Watersheds	HKGWERQMSYLRNIAIQRPMLRVTGEVLLVFCCAAPLVFAFSSFVAYGLYSLSH*
Ga0075017_1001084913	3300006059	Watersheds	MSYLRNIAIQRPMLRVTGEVLLVFCCAAPLVFAFSSFVAYGLYSLSH*
Ga0075015_1000810992	3300006102	Watersheds	MSYLADVANQRPLLRITAQVLLAFCCAAPLVLAFSSFVAYGVHALMH*
Ga0075018_108192411	3300006172	Watersheds	MSYLRNIAIQRPMLRVTGEVLLVFCCAAPLVFAFSSFVAYG
Ga0075014_1003346033	3300006174	Watersheds	KGWERQMSYLRNIANHRPMIRVTGEVLLAFCCAAPLVLALSSFVAYGLHSLTH*
Ga0070712_1007434772	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSYLRNITNHRPMLRLTAEVVFVFCCAAPLVLAFTSLVAYGLHSLTN*
Ga0079222_100480641	3300006755	Agricultural Soil	MSYLRNIANHHRPMIRVTAEVLLAFCCAALLVLAFTSLVAYGLRSLTN*
Ga0079222_102207181	3300006755	Agricultural Soil	MSYLRNIAIQRPMLRVTGEVLLAFCCAAPLVLALTSFVAYGLNSLSH*
Ga0079220_100384703	3300006806	Agricultural Soil	MSYSLNVASQRPMVRLAVQVILAFCCAAPLVLLLSSVVAYGVHTLIR*
Ga0079219_105906405	3300006954	Agricultural Soil	HMSYLSHVVSLRPMLRVTGEVLLAFCCAAPLVLAFTSFVAYALQVTH*
Ga0075435_1014203242	3300007076	Populus Rhizosphere	MSYLSDVTTQRPMFRITAGVFLAFCCAAPLVLAFSSAVAYG
Ga0126374_100047386	3300009792	Tropical Forest Soil	MSYLTQVAHQRPMLRVTAEIALVFCCAAPLVLAFSSLVGYGVSLMIH*
Ga0126374_102564551	3300009792	Tropical Forest Soil	MSYLSHVASQRPMLRVTGEIVLAFCCAAPLVLAFLSFVASGLHSLTY*
Ga0126373_1000407411	3300010048	Tropical Forest Soil	MSYLSGVASQRPLLRVSAQILLAFCCAAPLVLAFSSFVAYGVHTLLH*
Ga0126373_100981612	3300010048	Tropical Forest Soil	MSYLAGVANQRPLLRITAQVLLAFCCAAPLVLAFSSVVAYGVHTLMH*
Ga0126376_129707931	3300010359	Tropical Forest Soil	LRGVTRLAEQTEKGAERQMSHLLQVANQRPMLRAAGEVVVVFCFAAPLVLAFSSFVAYGLHSLTQ*
Ga0126372_102935373	3300010360	Tropical Forest Soil	LRGVTRLAEQTEKGAERQMSHLLQVANQRPMLRVAGEDVVVFCFAAPLVLAFSSFVAYGLHSLTQ*
Ga0126372_128937351	3300010360	Tropical Forest Soil	MNYLLQVANQRPMLRVAGEVVVVFCFAAPLVLAFSSVVAYGLHSLTH*
Ga0126372_130668711	3300010360	Tropical Forest Soil	QRPLLRITAQVLLAFCCAAPLVLAFSSFVAYGVHTLMH*
Ga0126378_107926791	3300010361	Tropical Forest Soil	VSRRPGVKRQMSYLSHVASQRPMLRVTGEIVLAFCCAAPLVLAFLSLVASGLHSLTY*
Ga0126379_105137573	3300010366	Tropical Forest Soil	MSYLTGVANQRPLLRIIAQVLLAFCCAAPLVLAFSS
Ga0126379_106545572	3300010366	Tropical Forest Soil	MSYLLQVANQRPMLRVTGEVLLAFCCAAPLVLAFLSFVASGLHSLTY*
Ga0126381_1001216575	3300010376	Tropical Forest Soil	LRGVTRLAEQTEKDAERQMSHLLQVANQRPMLRVAGEVVVVFCFAAPLVLAFSSFVAYGLHSLTQ*
Ga0126381_1031696361	3300010376	Tropical Forest Soil	HRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLHSLTH*
Ga0153928_11205751	3300012677	Attine Ant Fungus Gardens	MTYLRNIAIQRPMLRVTGEVVLVFCCSAPLVLAFSSFIAYGLHSLSH*
Ga0126375_108040972	3300012948	Tropical Forest Soil	MSYLRNIANQRPMLRVTGEVVLAFCCAAPLVLAFTSFVASGLHSLTH*
Ga0126375_109221203	3300012948	Tropical Forest Soil	GVKRQMSYLSHVANQRPMLRTAGKILLAFCCAAPLVLALTSFVDYGLHSLTH*
Ga0126369_101647153	3300012971	Tropical Forest Soil	MHYLLQVAKHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLHSLTH*
Ga0132258_103762103	3300015371	Arabidopsis Rhizosphere	MNYLTKIANHRPMLRVTGEVILVFCCAAPLVLAFSSLVGYGLHSLTH*
Ga0182036_104395971	3300016270	Soil	VSRRAGVKRQMSYLLQVANQRPMLRVTGEVLLAFCCAAPLVLAFLSLVAYGLHSVTH
Ga0182036_109481461	3300016270	Soil	MNYLLQVANQRPMLPVAGEVVVVFCFAAPLVLAFSSFVAYGLHS
Ga0182036_118673752	3300016270	Soil	MSYLSHVANQRPMLRVTGEVLLAFCCAAPLVLAFSSFVASGLH
Ga0182033_106085973	3300016319	Soil	MSYLLQVANQRPMLRVAAEVVVVFCFAAPLVLAFSSVVA
Ga0182033_106665701	3300016319	Soil	AITRYVSRRAGVKRQMSYLLQVANQRQMLRVTGEVLLAFCYAAPVVLAFSSLVAYVVTH
Ga0182035_103047481	3300016341	Soil	MSYLRNIAVQRPMLRVTGEVLLAFCCAAPLVLALTSLVAYG
Ga0182035_120230701	3300016341	Soil	MNHLLQIAKHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLHSLTH
Ga0182035_120912091	3300016341	Soil	MNYLLQVGNQRPMLRVAGEVVVVFCFAAPLVLAFSSVVAYGLHSLTH
Ga0182032_102705373	3300016357	Soil	MSYLLQVANQRPMLRVAGEVVVVFCFAAPLVLAFSSVVAYSLHSLTH
Ga0182032_105812291	3300016357	Soil	ERQMSYLTGVANQRPLLRITAQVLVAFCCAAPLVLAFSSLVAYGVHTLMH
Ga0182032_110604741	3300016357	Soil	SASQRPMLRVTGEIVLAFCCAAPLVLAFLSFVASGLHSLTY
Ga0182032_116782821	3300016357	Soil	MSYLSHVASQRPMLRVTGEIVLAFCCAAPLVLAFLSFVASGL
Ga0182034_101539411	3300016371	Soil	MSYLRNIAIQRPMLRVTGEVLLAFCCAAPLVLAVSSLVAYGLHSLTN
Ga0182034_102518583	3300016371	Soil	MSYLTGVANQRPLLRITAQVLLAFCCAAPLVLAFSSFVADGDSVVQVRQR
Ga0182034_110786081	3300016371	Soil	MSYLPSAANQRPFLRITAEVIVAFCCAAPLVLAFSVLVAYGVSALVH
Ga0182040_115618331	3300016387	Soil	QMSYLRNIAIQRPMLRVTGEVLLAFCCAAPLVLAFSSLVAYGLHSLTN
Ga0182037_117693662	3300016404	Soil	MNYLLQVAKHRPMLRVTGQVLLAFCCAAPLVLALSSFV
Ga0182039_106627891	3300016422	Soil	MNYLLQVAKHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLHS
Ga0182039_108551711	3300016422	Soil	GEHKGWERQMSYLRNIAIQRPMLRVTGEVLLAFCCAAPLVLAFSSLVAYGLHSLTN
Ga0182038_101542071	3300016445	Soil	MNYLLQVAKHRPMLRVTGQVLLAFCSAAPLVLALSSFVAYGLHSLTH
Ga0187802_1000015710	3300017822	Freshwater Sediment	MSYLADVANQRPLLRITAQVLLAFCCAAPLVLAFSSFVAYGVHALMH
Ga0187802_100212874	3300017822	Freshwater Sediment	MSYLTNIANRRPMLRVTGEVLLVFCCATPLVLAFSSFVAYGLHSLTH
Ga0187802_100305544	3300017822	Freshwater Sediment	MSYLRNIAIQRPMLRVTGEVLLVFCCAAPLVLALTSFVAYGLNSLSH
Ga0187818_100426194	3300017823	Freshwater Sediment	MSYLTNIANQRPMLRVTGEVFLVFCCAAPLVLAFSSFVAYGLHSLSH
Ga0187824_100157543	3300017927	Freshwater Sediment	MSYLRNIAIQRPMLRVTGEVLLAFCCAAPLVLALTSLVAYGLRSLSH
Ga0187824_100651812	3300017927	Freshwater Sediment	MSYLTDVANQRPLLRIAAQVVLAFCCAAPLVLAFSSFVAYGVHALMH
Ga0187801_102784342	3300017933	Freshwater Sediment	MSYLTNIVNGRPMLRVTGEVLLVFCCAAPLVLAFSSFIAYGLLSLTH
Ga0187821_100249951	3300017936	Freshwater Sediment	MSYLTNIANQRPMVRVTGEVLLVFCCATPLVLAFSSFVAYGLHSLTH
Ga0187821_100618791	3300017936	Freshwater Sediment	MSYLRNIAIQRPMLRVTGEVLLAFCCAAPLVLAFASLVAYGLHSL
Ga0187819_100775182	3300017943	Freshwater Sediment	MSYLRNIAHRRPMLRVTGEVLLVFCCAAPLVLAISSFVAYGLHSLSH
Ga0187819_104469081	3300017943	Freshwater Sediment	MNSLFQIAKHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLHSLTH
Ga0187779_101423703	3300017959	Tropical Peatland	MSYLNSVANQRPLLRITAQVVLAFCCAAPLVLAFSSFVAYGVHTLMH
Ga0187776_109281971	3300017966	Tropical Peatland	YLRNIAIQRPMIRVTGEVLLAFCCAAPLVLALTSFVAYGLHSLSH
Ga0187822_100628452	3300017994	Freshwater Sediment	MTELLNAASHIANQRPMVRLSVQVILAFCCAAPLILLFSSVVAYGVHALMH
Ga0187804_103439661	3300018006	Freshwater Sediment	MSYLRNIAIQRPMLRVTGEVLLVFCCAAPLVLALTSFVAYGLNSLS
Ga0187804_103630991	3300018006	Freshwater Sediment	MSYLTNIANQRPMLRVTGEVLLAFCCAAPLVLAFSSFVAYGLRSLSH
Ga0187766_100279864	3300018058	Tropical Peatland	MTYLANVAKQRSMLRVTTEIVLTFCCATPLVFAFSSLVAYGVNSLTH
Ga0187768_10615413	3300020150	Tropical Peatland	YLNSVANQRPLLRITAQVVLAFCCAAPLVLAFSSFVAYGVHTLMH
Ga0210403_101565003	3300020580	Soil	MSYLRNIAIQRPMLRVTGEVVLVFCCSAPLVLAFSSFIAYGLHSLSH
Ga0210399_100757972	3300020581	Soil	MSYLRNIAVQRPMLRVTGEVLLAFCCAAPLVLAFTSIVAYGLHSLTH
Ga0210394_100818031	3300021420	Soil	MSYLTGVANQRPLLRITAQVLLAFCCAAPLVLAFSSFVAYGVHTLMH
Ga0210394_110149752	3300021420	Soil	MNSLFQIAKHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYG
Ga0126371_1000663612	3300021560	Tropical Forest Soil	MSYLAGVANQRPLLRITAQVLLAFCCAAPLVLAFSSVVAYGVHTLMH
Ga0126371_100562221	3300021560	Tropical Forest Soil	MSYLTQVAHQRPMLRVTAEIALVFCCAAPLVLAFSSLVGYGVSLMIH
Ga0126371_100643695	3300021560	Tropical Forest Soil	MSYLSHVVNQRPMLRVAGEVLLAFCCAAPLVLAFSSFVAAGVHSLTH
Ga0126371_106590181	3300021560	Tropical Forest Soil	KGGERQMHYLSQVANHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLHSLTH
Ga0126371_109678662	3300021560	Tropical Forest Soil	MSYLLQVANQRWMLRVTAEVVLVFCCAAPLVLAFTSFVGYGLHSLTR
Ga0126371_130595832	3300021560	Tropical Forest Soil	MSYLSGVASQRPLLRVSAQILLAFCCAAPLVLAFSSFVAYGVHTLLH
Ga0242652_10151831	3300022510	Soil	SYLTNIANRRPMLRVTGEVLLVFCCATPLVLAFSSFVAYGLHSLTH
Ga0207685_108276552	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSYLRNIANHHRPMIRVTAEVLLAFCCAALLVLAFTSLVAYGLRSLTN
Ga0207693_101634694	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSYLRNITNHRPMLRLTAEVVFVFCCAAPLVLAFTSLVAYGLHSLTN
Ga0207693_108912162	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSYLSHVVSQRPMLRVTGEVLLAFCCAAPLVLAFTSF
Ga0207693_114423782	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	SYLRNIATHRPMIRVTGEVLLAFCCAAPLVLAFTSLVAYGLRSLTN
Ga0207664_111460452	3300025929	Agricultural Soil	MSYLSDVTTQRPMFRITAGVFLAFCCAAPLVLAFSSAVAYGVHLLIN
Ga0207723_1165412	3300026824	Tropical Forest Soil	MSYLLQVANQRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLHSLTH
Ga0207802_10219171	3300026847	Tropical Forest Soil	MSYLLQVANQRPMLHVTGEVLLAFCCAAPLVLALSSFVAYGLHSLTH
Ga0207838_1048872	3300026852	Tropical Forest Soil	MSYLLQVANQRPMLRVTGEVLLAFCCAAPLVLALSSFVAYGLHSLTH
Ga0207730_10239281	3300026896	Tropical Forest Soil	MNYLLQVAKHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLH
Ga0207840_10097371	3300026910	Tropical Forest Soil	MSYLLQVANQRPMLHVTGEVLLAFCCAAPLVLAFLSL
Ga0207744_10217122	3300026927	Tropical Forest Soil	NYLLQVAKHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLHSLTH
Ga0207817_10141183	3300026979	Tropical Forest Soil	MSYLLQVANQRPMLRVTSEVLLAFCCAAPLVLAFLSLVAYGLHSVTH
Ga0207826_10145793	3300027680	Tropical Forest Soil	MSYLTSVANQRPLLRITAQVILAFCCAAPVVLAFSSFVAYGVHTLMH
Ga0209178_10245072	3300027725	Agricultural Soil	MSYLRNIAIQRPMLRVTGEVLLAFCCAAPLVLALTSFVAYGLNSLSH
Ga0209073_102155481	3300027765	Agricultural Soil	NIANHHRPMIRVTAEVLLAFCCAALLVLAFTSLVAYGLRSLTN
Ga0209074_100128904	3300027787	Agricultural Soil	MSYLTGVANQRPLLRITAQVLLAFCCAAPLVLAFSS
Ga0209074_100163211	3300027787	Agricultural Soil	MSYLRNIANHHRPMIRVTAEVLLAFCCAAPLVLAFTSLVAYGLRSLTN
Ga0209465_100266102	3300027874	Tropical Forest Soil	MSHLLQVANQRPMLRVAGEVVVVFCFAAPLVLAFSSFVAYGLYSLTQ
Ga0209067_101439784	3300027898	Watersheds	MSYLTDVANQRPLLRITAQVLLAFCCAAPLVLAFSSFVAYGVHALMH
Ga0209698_103018143	3300027911	Watersheds	MSYLTDVANQRPLLRITAQVLLAFCCAPPLVLAFSSFVAYVVHAL
Ga0209069_100571922	3300027915	Watersheds	MSYLRNIAIQRPMLRVTGEVLLAFCCAAPLVFAFSSFVAYGLYSLSH
Ga0209168_101204292	3300027986	Surface Soil	MTDFFNAASHIANQRPMVRLSVQVILAFCCAAPLILLFSSVVAYGVHALMH
Ga0170818_1072596533	3300031474	Forest Soil	MSYLRNIAIQRPMLRVTGEVVLVFCCAAPLVLAFSSFVAYSLHSLSH
Ga0170818_1124118691	3300031474	Forest Soil	MSYLSHVANQRPMLRVTGEIVLAFCCAAPLVLALTSVVAYGLHS
Ga0318516_104526921	3300031543	Soil	MSYLTGVANQRPLLRITAQVLVAFCCAAPLVLAFSSLVAY
Ga0318534_101988592	3300031544	Soil	MSYLYNVANQRPMLRLTVEVTLAFCCAAPVVLLISSVVAYGVRALTH
Ga0318541_102846762	3300031545	Soil	MSYLTGVANQRPLLRITAQVLVAFCCAAPLVLAFSSLVAYGVHTLMH
Ga0318541_105523462	3300031545	Soil	MSYLIQVANRRPMLRVTAEVVLTFCCAAPLILALSSLVGYGVHS
Ga0318541_108047872	3300031545	Soil	MSYLSHVASQRPMLRVTGEIVLAFCCAAPLVLAFLSFVASGLHSLTY
Ga0318573_104545321	3300031564	Soil	MSYLRNIAVQRPMLRVTGEVLLAFCCAAPLVLALTSLVA
Ga0318573_105059141	3300031564	Soil	HKGGRQMSYLRNIAVQRPMLRVTGEVLLAFCCAAPLVLALTSLVAYGLHSLTH
Ga0318515_104752522	3300031572	Soil	VNQRPILRVSGEIVLAFCCAAPLVLLVSSLVAYGVRSFLQ
Ga0310915_102122602	3300031573	Soil	MSYLLQVTNQRPMLRVTAEVVLMFCCAAPVVLAFSSFVAYGLHSLTH
Ga0310915_102989131	3300031573	Soil	MSYLLQVANQRPMLRVAAEVVVVFCFAAPLVLAFSSVVAYGLHSLTH
Ga0310915_108976531	3300031573	Soil	MSYLRNIAIQRPMLRVTGEVLLAFCCAAPLVLAFSSLVAYGLHSLTN
Ga0318555_107786142	3300031640	Soil	LLQVAKHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLHSLTH
Ga0306917_101959171	3300031719	Soil	MSYLTGVANQRPLLRITAQVLVAFCCAAPLVLAFSSLVAYGVHT
Ga0306918_100869973	3300031744	Soil	MSYLSHVANQRPMLRVAGEVLLVFFFAAPLVLAFT
Ga0306918_103299011	3300031744	Soil	MSYLRNIAVQRPMLRVTGEVLLAFCCAAPLVLALTSLVAYGLHSL
Ga0306918_107396662	3300031744	Soil	MSYLPSAANQRPLLRITAEVIVAFCCAAPLVLAFSVLVAYGVSALVH
Ga0306918_111600511	3300031744	Soil	NIAIQRPMLRVTGEVLLAFCCAAPLVLAFSSLVAYGLHSLTN
Ga0306918_114070432	3300031744	Soil	MLRGAGEVLLVFCFAAPLVLAFTSLVAYGLHSLTN
Ga0318502_107311963	3300031747	Soil	QRPMLRVTGEVLLAFCCAAPLVLAFLSLVAYGLHSVTH
Ga0307477_100127387	3300031753	Hardwood Forest Soil	MSYLTKIANHRPMIRVTAEVLFAFCCAAPLVLAFTSLVAYSLHSLTN
Ga0307477_101666023	3300031753	Hardwood Forest Soil	MSYLRNVAIQRPMLRVTGEVLLVFCCAAPLVLAFSSFVAYGLH
Ga0307477_108183131	3300031753	Hardwood Forest Soil	MSYLRNIAVQRPMLRVTGEVLLAFCCAAPLVLAFTSLVAYGLHSLTH
Ga0318508_11095401	3300031780	Soil	MSYLTGVANQRPLLRITAQVFLAFCCAAPLVLAFSSVVAYGV
Ga0318508_12214112	3300031780	Soil	MSYLSHVANQRPMLRVTGEVLLAFCCAAPLVLAFSSFVASGLHS
Ga0318547_102480211	3300031781	Soil	MSYLTGVANQRPLLRITAQVFLAFCCAAPLVLAFSSVVAYGVHTLMH
Ga0318547_109903062	3300031781	Soil	MLRVAGEVVVVFCFAAPLVLAFSSVVAYSLHSLTH
Ga0318576_104308491	3300031796	Soil	MSYLLQVANQRPMLRVTGEVLLAFCCAAALVLAFLSLVAYGLHSVTH
Ga0318568_103881081	3300031819	Soil	MNYLLQVAKHRPMLRVTGQVLLAFCCAAPLVLALS
Ga0310917_105653432	3300031833	Soil	ITRYVSRRPGVKCQMGYLLQVANQRPMLRVTGEVLLAFCYATPVVLAFSSLVAYVVTH
Ga0310917_107510061	3300031833	Soil	MNYLLQVGNQRPMLRVAGEVVVVFCFAAPLVLAFS
Ga0306919_105278331	3300031879	Soil	MNYLLQVAKHRPMLRVTGQVLLAFCCAAPLVLALSS
Ga0306925_100615137	3300031890	Soil	MNYLLQVAKHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGL
Ga0306925_103414604	3300031890	Soil	MSYLRNIAVQRPMLRVTGEVLLAFCCAAPLVLALTSLVAYGLHSLTH
Ga0306925_118337702	3300031890	Soil	MSYLSHVANQRPMLRVTGEVLLAFCCAAPLVLASGLH
Ga0318520_105570892	3300031897	Soil	PGVQRQMSYLSHVANQRPMLRVAGEVLLVFCFAAPLVLAFTSLVAYGLHSLTN
Ga0318520_105920173	3300031897	Soil	ITRYVSRRAGVKRQMSYLLQVANQRPMLRVTGEVLLAFCCAAPLVLAFLSLVAYGLHSVT
Ga0306923_106513962	3300031910	Soil	LQVAKHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLHSLTH
Ga0306923_118510051	3300031910	Soil	SYLTGVANQRPLLRITAQVLLAFCCAAPLVLAFSSVVAYGVHTLMH
Ga0306921_101376057	3300031912	Soil	MSYLSGVASQRPLLRVSAQILLAFCCAAPLVLAFSSFVVYGVHTLLH
Ga0306921_104756471	3300031912	Soil	QMSYLSHVANQRPMLRVTGEVLLAFCCAAPLVLAFSSFVASGLHSLAH
Ga0306921_110244071	3300031912	Soil	MNYLLQVANQRPMLRVAGEVVVVFCFAAPLVLAFSSVVAYGLHSLTH
Ga0306921_110593081	3300031912	Soil	SYLSYVVNQRPILRVSGEIVLAFCCAAPLVLLVSSLVAYGVRSFLQ
Ga0306921_113795052	3300031912	Soil	MNYLSHVASQRPMLRVTGEIVLAFCCAAPLVLAFLSFVASGLHSLTY
Ga0306921_115737171	3300031912	Soil	GWERQMSYLRNIAVQRPMLRVTGEVLLAFCCAAPLVLALTSLVAYGLHSLTH
Ga0310916_100651463	3300031942	Soil	MSYLSHVANQRPMLRVTGEVLLAFCCAAPLVLAFSSFVASGLHSLAH
Ga0310916_108650372	3300031942	Soil	MSYLTGVANQRPLLRITAQVFLAFCCAAPLVLAFSSVVAYG
Ga0310913_111522212	3300031945	Soil	MLRITAEVVLVFCCAAPLVLALTSFVDYGLHSLTH
Ga0310910_102030553	3300031946	Soil	QRPMLRVTGEVLLAFCCAAPLVLAFSSLVAYGLHSLTN
Ga0310909_108936561	3300031947	Soil	MNYLLQVANQRPMLRVAGEVVVVFCFAAPLVLAFSCVVAYGLHSLTH
Ga0306926_107133163	3300031954	Soil	LTGVANQRPLLRITAQVLVAFCCAAPLVLAFSSLVAYGVHTLMH
Ga0306926_125099982	3300031954	Soil	MSYLLQVANQRRMLRVAAEVVVVFCFAAPLVLVFSSVVAYGLHSLTH
Ga0318530_101413721	3300031959	Soil	MSYLLQVANQRPMLRVTGEVLLAFCCAAPLVLAFLS
Ga0307479_101235783	3300031962	Hardwood Forest Soil	MSYLRNVAIQRPMLRVTGEVLLVFCCAAPLVLAFSSFVAYGLHSLSH
Ga0307479_113423852	3300031962	Hardwood Forest Soil	NHHRPMIRVTGEVLLAFCCAAPLVLAFTSLVAYGLRSLTN
Ga0306922_120133682	3300032001	Soil	VANQRPMLRVAGEVLLVFCCAAPLVLAFTSLVAYGLHSLAN
Ga0310911_109062272	3300032035	Soil	MSYLSHVANQRPMLRVTGEVLLAFCCAAPLVLAFSS
Ga0318549_103190881	3300032041	Soil	KHRPMLRVTGQVLLAFCCAAPLVLALSSFVAYGLHSLTH
Ga0318549_105095962	3300032041	Soil	MNYLSHVASQRPMLRVTGEIVLAFCCAAPPVLAFLSFVA
Ga0318506_104725871	3300032052	Soil	MSYLSHVANQRPMLRVTGEVLLAFCCAAPLVLAFSSFV
Ga0318533_106963191	3300032059	Soil	MSYLLQITNQRPMLRGTAEVVLMFCCAAPVVLAFSSFVAYGLHSLTH
Ga0318505_104443821	3300032060	Soil	LSGVASQRPLLRVSAQNLLALCCAAPLVLAFSSFVAYGVHTLLH
Ga0318525_105080581	3300032089	Soil	SYLYNVANQRPMLRLTVEVTLAFCCAAPVVLLISSVVAYGVRALTH
Ga0318540_102566491	3300032094	Soil	MSYLLQVANQRPMLRVAAEVVVVFCFAAPLVLAFSSVVAYSLHSLTH
Ga0318540_103572692	3300032094	Soil	MSYLLQVANQRQMLRVTGEVLLAFCCAAPLVLAFLSLV
Ga0318540_104189441	3300032094	Soil	YVSRRAGVKRQMSYLLQVANQRQMLRVTGEVLLAFCCAAPLVLAFLSLVAYGLHSVTH
Ga0306920_1003079141	3300032261	Soil	AITRYVSRRPRVKRQMSYLSHVANQRPMLRVTGEVLLAFCCAAPLVLASGLHSLAH
Ga0306920_1041347072	3300032261	Soil	MNYLLQVANQRPMLRVAGEVVVVFCFAAPLVLAFSSVVAYSLHSLTH
Ga0306920_1043084911	3300032261	Soil	MSYLTGVANQRPLLRITAQILLAFCCAAPLVLAFSSFVAYGVHTLMH
Ga0318519_101636161	3300033290	Soil	MSYLRNIAVQRPMLRVTGEVLLAFCCAAPLVLALTSLVAYGLHS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F022958

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences