Metagenome / Metatranscriptome Family F028290

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F028290
Family Type	Metagenome / Metatranscriptome
Number of Sequences	192
Average Sequence Length	52 residues
Representative Sequence	MYAIAVVLLNALSFASLAYVANRKGYHAMAALLAAGAWLFGVTGGVLIWVWR
Number of Associated Samples	109
Number of Associated Scaffolds	192

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.52 %
% of genes near scaffold ends (potentially truncated)	23.44 %
% of genes from short scaffolds (< 2000 bps)	89.06 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (76.042 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.729 % of family members)
Environment Ontology (ENVO)	Unclassified (23.438 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.542 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.75% β-sheet: 0.00% Coil/Unstructured: 41.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 192 Family Scaffolds
PF00486	Trans_reg_C	2.60
PF04773	FecR	2.08
PF13505	OMP_b-brl	2.08
PF01068	DNA_ligase_A_M	2.08
PF04392	ABC_sub_bind	1.04
PF01145	Band_7	1.04
PF00491	Arginase	1.04
PF11074	DUF2779	1.04
PF00072	Response_reg	0.52
PF01124	MAPEG	0.52
PF13474	SnoaL_3	0.52
PF11578	DUF3237	0.52
PF00011	HSP20	0.52
PF13604	AAA_30	0.52
PF02586	SRAP	0.52
PF08388	GIIM	0.52
PF00589	Phage_integrase	0.52
PF02798	GST_N	0.52
PF00313	CSD	0.52
PF13406	SLT_2	0.52
PF01381	HTH_3	0.52
PF10137	TIR-like	0.52
PF03968	LptD_N	0.52
PF13683	rve_3	0.52
PF11272	DUF3072	0.52
PF00881	Nitroreductase	0.52
PF01266	DAO	0.52

COG ID	Name	Functional Category	% Frequency in 192 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.08
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.08
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	1.04
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.04
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.52
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.52

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.04 %
All Organisms	root	All Organisms	23.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.04 %
cellular organisms	root	All Organisms → cellular organisms	23.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	20.31 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14.58 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.04 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.52 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.04 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.90 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.08 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.04 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.52 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.04 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.65 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.08 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.04 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.52 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.52 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.52 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.52 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.04 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.08 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.08 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.04 %
Chelativorans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans	0.52 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.52 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	0.52 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.52 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.08 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.04 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.52 %
unclassified Chelativorans	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans	0.52 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.52 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.52 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.52 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.08 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.04 %
Bradyrhizobium sp. ARR65	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	0.52 %
Chelativorans sp. ZYF759	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. ZYF759	0.52 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.52 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.52 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.52 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.52 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459018\|G1P06HT02HGQKH	Not Available	597	Open in IMG/M
2209111022\|2221207768	Not Available	996	Open in IMG/M
3300003505\|JGIcombinedJ51221_10051928	Not Available	1559	Open in IMG/M
3300003505\|JGIcombinedJ51221_10059384	Not Available	1471	Open in IMG/M
3300003505\|JGIcombinedJ51221_10072614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1343	Open in IMG/M
3300003505\|JGIcombinedJ51221_10117972	Not Available	1063	Open in IMG/M
3300003505\|JGIcombinedJ51221_10274410	Not Available	686	Open in IMG/M
3300004114\|Ga0062593_102691638	Not Available	566	Open in IMG/M
3300004479\|Ga0062595_101721270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	591	Open in IMG/M
3300004635\|Ga0062388_102049282	Not Available	593	Open in IMG/M
3300005354\|Ga0070675_101860446	Not Available	555	Open in IMG/M
3300005355\|Ga0070671_101715483	Not Available	557	Open in IMG/M
3300005435\|Ga0070714_101391106	Not Available	685	Open in IMG/M
3300005436\|Ga0070713_100736428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	943	Open in IMG/M
3300005556\|Ga0066707_10896202	Not Available	544	Open in IMG/M
3300005602\|Ga0070762_10531233	Not Available	774	Open in IMG/M
3300005764\|Ga0066903_102925853	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300006041\|Ga0075023_100192942	Not Available	781	Open in IMG/M
3300006041\|Ga0075023_100239604	Not Available	720	Open in IMG/M
3300006041\|Ga0075023_100269253	Not Available	689	Open in IMG/M
3300006057\|Ga0075026_100446493	Not Available	735	Open in IMG/M
3300006057\|Ga0075026_100567213	Not Available	663	Open in IMG/M
3300006059\|Ga0075017_100422543	Not Available	1002	Open in IMG/M
3300006102\|Ga0075015_100461976	Not Available	725	Open in IMG/M
3300006102\|Ga0075015_100549491	Not Available	671	Open in IMG/M
3300006102\|Ga0075015_101032180	Not Available	504	Open in IMG/M
3300006172\|Ga0075018_10247739	Not Available	862	Open in IMG/M
3300006172\|Ga0075018_10670945	Not Available	558	Open in IMG/M
3300006174\|Ga0075014_100053550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1742	Open in IMG/M
3300006174\|Ga0075014_100070445	Not Available	1559	Open in IMG/M
3300006175\|Ga0070712_100812001	Not Available	803	Open in IMG/M
3300006175\|Ga0070712_101842777	Not Available	530	Open in IMG/M
3300006577\|Ga0074050_11826938	Not Available	576	Open in IMG/M
3300006580\|Ga0074049_13118795	Not Available	549	Open in IMG/M
3300006893\|Ga0073928_10108684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2310	Open in IMG/M
3300006893\|Ga0073928_10109656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2297	Open in IMG/M
3300006893\|Ga0073928_10117058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2204	Open in IMG/M
3300006893\|Ga0073928_10130650	Not Available	2055	Open in IMG/M
3300006893\|Ga0073928_10178542	Not Available	1683	Open in IMG/M
3300007982\|Ga0102924_1016624	All Organisms → cellular organisms → Bacteria → Proteobacteria	5647	Open in IMG/M
3300007982\|Ga0102924_1023294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4385	Open in IMG/M
3300007982\|Ga0102924_1081064	Not Available	1713	Open in IMG/M
3300007982\|Ga0102924_1319628	Not Available	610	Open in IMG/M
3300009098\|Ga0105245_11786903	Not Available	667	Open in IMG/M
3300009522\|Ga0116218_1026059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2612	Open in IMG/M
3300009522\|Ga0116218_1168483	Not Available	993	Open in IMG/M
3300009523\|Ga0116221_1098024	Not Available	1298	Open in IMG/M
3300009698\|Ga0116216_10043692	All Organisms → cellular organisms → Bacteria	2771	Open in IMG/M
3300009700\|Ga0116217_10763215	Not Available	596	Open in IMG/M
3300010048\|Ga0126373_11926143	Not Available	654	Open in IMG/M
3300010154\|Ga0127503_10976014	Not Available	591	Open in IMG/M
3300010375\|Ga0105239_10479903	Not Available	1412	Open in IMG/M
3300010379\|Ga0136449_101202798	Not Available	1193	Open in IMG/M
3300011106\|Ga0151489_1455454	Not Available	751	Open in IMG/M
3300011120\|Ga0150983_10715376	Not Available	818	Open in IMG/M
3300011120\|Ga0150983_13735072	Not Available	677	Open in IMG/M
3300011120\|Ga0150983_14440934	Not Available	642	Open in IMG/M
3300012089\|Ga0153924_1093306	Not Available	605	Open in IMG/M
3300012200\|Ga0137382_10860614	Not Available	653	Open in IMG/M
3300012958\|Ga0164299_10508585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	803	Open in IMG/M
3300012960\|Ga0164301_11281275	Not Available	593	Open in IMG/M
3300012984\|Ga0164309_10148305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans → unclassified Chelativorans → Chelativorans sp. ZYF759	1556	Open in IMG/M
3300012984\|Ga0164309_10258512	Not Available	1232	Open in IMG/M
3300012985\|Ga0164308_12169293	Not Available	517	Open in IMG/M
3300012987\|Ga0164307_10683853	Not Available	802	Open in IMG/M
3300012989\|Ga0164305_11687829	Not Available	568	Open in IMG/M
3300012989\|Ga0164305_12187075	Not Available	509	Open in IMG/M
3300013297\|Ga0157378_10890355	All Organisms → cellular organisms → Bacteria → Proteobacteria	920	Open in IMG/M
3300014056\|Ga0120125_1189550	Not Available	509	Open in IMG/M
3300014325\|Ga0163163_10988878	Not Available	904	Open in IMG/M
3300015371\|Ga0132258_12656964	Not Available	1250	Open in IMG/M
3300015372\|Ga0132256_103866403	Not Available	504	Open in IMG/M
3300015373\|Ga0132257_103637038	Not Available	561	Open in IMG/M
3300015374\|Ga0132255_101251487	Not Available	1119	Open in IMG/M
3300015374\|Ga0132255_101661490	Not Available	969	Open in IMG/M
3300016270\|Ga0182036_11468716	Not Available	572	Open in IMG/M
3300016371\|Ga0182034_11344687	Not Available	624	Open in IMG/M
3300016404\|Ga0182037_11369729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300016404\|Ga0182037_11576380	Not Available	584	Open in IMG/M
3300017933\|Ga0187801_10289235	Not Available	665	Open in IMG/M
3300017933\|Ga0187801_10328341	Not Available	626	Open in IMG/M
3300018006\|Ga0187804_10213021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	827	Open in IMG/M
3300018006\|Ga0187804_10245675	Not Available	772	Open in IMG/M
3300020579\|Ga0210407_10023257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4606	Open in IMG/M
3300020579\|Ga0210407_10041693	All Organisms → cellular organisms → Bacteria → Proteobacteria	3418	Open in IMG/M
3300020579\|Ga0210407_10050954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	3091	Open in IMG/M
3300020579\|Ga0210407_10054361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2992	Open in IMG/M
3300020579\|Ga0210407_10105040	Not Available	2149	Open in IMG/M
3300020579\|Ga0210407_10330855	Not Available	1191	Open in IMG/M
3300020579\|Ga0210407_10419209	Not Available	1047	Open in IMG/M
3300020579\|Ga0210407_10448716	Not Available	1009	Open in IMG/M
3300020579\|Ga0210407_10525721	Not Available	924	Open in IMG/M
3300020579\|Ga0210407_10539064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	911	Open in IMG/M
3300020579\|Ga0210407_10688506	All Organisms → cellular organisms → Bacteria → Proteobacteria	793	Open in IMG/M
3300020579\|Ga0210407_10818522	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300020580\|Ga0210403_10304948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1305	Open in IMG/M
3300020580\|Ga0210403_10397368	Not Available	1126	Open in IMG/M
3300020580\|Ga0210403_10723981	Not Available	796	Open in IMG/M
3300020580\|Ga0210403_11370108	Not Available	537	Open in IMG/M
3300020581\|Ga0210399_10098129	Not Available	2394	Open in IMG/M
3300020581\|Ga0210399_10223659	Not Available	1568	Open in IMG/M
3300020583\|Ga0210401_10144102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2228	Open in IMG/M
3300020583\|Ga0210401_11206626	Not Available	615	Open in IMG/M
3300021088\|Ga0210404_10061361	Not Available	1802	Open in IMG/M
3300021088\|Ga0210404_10746957	Not Available	558	Open in IMG/M
3300021168\|Ga0210406_10317719	Not Available	1263	Open in IMG/M
3300021168\|Ga0210406_10344308	Not Available	1204	Open in IMG/M
3300021168\|Ga0210406_10612960	Not Available	848	Open in IMG/M
3300021168\|Ga0210406_10781129	Not Available	728	Open in IMG/M
3300021168\|Ga0210406_11306451	Not Available	522	Open in IMG/M
3300021171\|Ga0210405_10028965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4445	Open in IMG/M
3300021178\|Ga0210408_10246944	Not Available	1421	Open in IMG/M
3300021178\|Ga0210408_10273136	Not Available	1347	Open in IMG/M
3300021178\|Ga0210408_10586296	Not Available	883	Open in IMG/M
3300021178\|Ga0210408_10622040	Not Available	854	Open in IMG/M
3300021178\|Ga0210408_11252810	Not Available	564	Open in IMG/M
3300021178\|Ga0210408_11393096	Not Available	528	Open in IMG/M
3300021178\|Ga0210408_11410945	Not Available	524	Open in IMG/M
3300021180\|Ga0210396_11733590	Not Available	507	Open in IMG/M
3300021181\|Ga0210388_11422218	Not Available	582	Open in IMG/M
3300021403\|Ga0210397_10275773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1228	Open in IMG/M
3300021403\|Ga0210397_11343420	Not Available	555	Open in IMG/M
3300021404\|Ga0210389_11422173	Not Available	529	Open in IMG/M
3300021405\|Ga0210387_11141363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	678	Open in IMG/M
3300021407\|Ga0210383_11737625	Not Available	510	Open in IMG/M
3300021420\|Ga0210394_10749424	Not Available	855	Open in IMG/M
3300021432\|Ga0210384_10203653	Not Available	1779	Open in IMG/M
3300021475\|Ga0210392_10387199	Not Available	1017	Open in IMG/M
3300021477\|Ga0210398_10351109	Not Available	1203	Open in IMG/M
3300021478\|Ga0210402_10152879	All Organisms → cellular organisms → Bacteria → Proteobacteria	2103	Open in IMG/M
3300021479\|Ga0210410_10353185	Not Available	1318	Open in IMG/M
3300021479\|Ga0210410_11321963	Not Available	613	Open in IMG/M
3300021559\|Ga0210409_10401277	All Organisms → cellular organisms → Bacteria → Proteobacteria	1227	Open in IMG/M
3300021559\|Ga0210409_10899340	Not Available	759	Open in IMG/M
3300021559\|Ga0210409_11469215	Not Available	557	Open in IMG/M
3300022525\|Ga0242656_1067228	Not Available	651	Open in IMG/M
3300022557\|Ga0212123_10066824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3129	Open in IMG/M
3300022557\|Ga0212123_10090686	All Organisms → cellular organisms → Bacteria → Proteobacteria	2535	Open in IMG/M
3300022557\|Ga0212123_10174650	Not Available	1625	Open in IMG/M
3300022557\|Ga0212123_10239184	Not Available	1312	Open in IMG/M
3300022557\|Ga0212123_10917762	Not Available	514	Open in IMG/M
3300022717\|Ga0242661_1103654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	597	Open in IMG/M
3300022724\|Ga0242665_10021461	Not Available	1492	Open in IMG/M
3300022724\|Ga0242665_10099358	Not Available	861	Open in IMG/M
3300022726\|Ga0242654_10137964	Not Available	803	Open in IMG/M
3300022726\|Ga0242654_10305728	Not Available	586	Open in IMG/M
3300024227\|Ga0228598_1008852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2024	Open in IMG/M
3300024227\|Ga0228598_1103605	Not Available	575	Open in IMG/M
3300025320\|Ga0209171_10300142	Not Available	857	Open in IMG/M
3300025907\|Ga0207645_10358665	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
3300025915\|Ga0207693_11311443	Not Available	541	Open in IMG/M
3300025932\|Ga0207690_11222175	Not Available	628	Open in IMG/M
3300027070\|Ga0208365_1021727	All Organisms → cellular organisms → Bacteria → Proteobacteria	828	Open in IMG/M
3300027102\|Ga0208728_101254	Not Available	757	Open in IMG/M
3300027696\|Ga0208696_1265553	Not Available	530	Open in IMG/M
3300027889\|Ga0209380_10862542	Not Available	510	Open in IMG/M
3300027910\|Ga0209583_10351990	Not Available	686	Open in IMG/M
3300027910\|Ga0209583_10404416	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300027911\|Ga0209698_10500083	Not Available	941	Open in IMG/M
3300027915\|Ga0209069_10051280	Not Available	1940	Open in IMG/M
3300027915\|Ga0209069_10104273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1373	Open in IMG/M
3300027915\|Ga0209069_10720091	Not Available	588	Open in IMG/M
3300027915\|Ga0209069_10877245	Not Available	542	Open in IMG/M
3300028906\|Ga0308309_11523683	Not Available	571	Open in IMG/M
3300030494\|Ga0310037_10030371	All Organisms → cellular organisms → Bacteria	2600	Open in IMG/M
3300030494\|Ga0310037_10074812	Not Available	1589	Open in IMG/M
3300031231\|Ga0170824_107270528	Not Available	785	Open in IMG/M
3300031231\|Ga0170824_122337577	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1252	Open in IMG/M
3300031231\|Ga0170824_122365909	Not Available	1153	Open in IMG/M
3300031474\|Ga0170818_111042235	Not Available	1147	Open in IMG/M
3300031708\|Ga0310686_100533229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1856	Open in IMG/M
3300031708\|Ga0310686_102224067	Not Available	1523	Open in IMG/M
3300031708\|Ga0310686_107052013	Not Available	794	Open in IMG/M
3300031708\|Ga0310686_107289261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	991	Open in IMG/M
3300031708\|Ga0310686_107770453	Not Available	1368	Open in IMG/M
3300031708\|Ga0310686_110640189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	881	Open in IMG/M
3300031708\|Ga0310686_113669637	Not Available	899	Open in IMG/M
3300031708\|Ga0310686_114002231	Not Available	1528	Open in IMG/M
3300031708\|Ga0310686_114329482	Not Available	1945	Open in IMG/M
3300031716\|Ga0310813_11064858	Not Available	740	Open in IMG/M
3300031754\|Ga0307475_11440498	Not Available	530	Open in IMG/M
3300031910\|Ga0306923_11084924	Not Available	864	Open in IMG/M
3300031912\|Ga0306921_10585443	Not Available	1292	Open in IMG/M
3300032001\|Ga0306922_11802091	Not Available	603	Open in IMG/M
3300032059\|Ga0318533_10744682	Not Available	719	Open in IMG/M
3300032160\|Ga0311301_10435807	Not Available	1983	Open in IMG/M
3300032160\|Ga0311301_11758714	All Organisms → cellular organisms → Bacteria → Proteobacteria	741	Open in IMG/M
3300032180\|Ga0307471_103661077	Not Available	544	Open in IMG/M
3300032180\|Ga0307471_103984860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300032205\|Ga0307472_102072152	Not Available	571	Open in IMG/M
3300032261\|Ga0306920_103429389	Not Available	588	Open in IMG/M
3300033433\|Ga0326726_11296929	Not Available	709	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.15%
Host-Associated	Host-Associated	8.33%
Engineered	Engineered	0.52%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.79%
Aquatic	Environmental → Aquatic	21.35%
Plants	Host-Associated → Plants	7.81%
Fungi	Host-Associated → Fungi	0.52%
Solid Waste	Engineered → Solid Waste	0.52%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.27%
Sediment	Environmental → Aquatic → Sediment	10.42%
Thermal Springs	Environmental → Aquatic → Thermal Springs	7.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.21%
Freshwater	Environmental → Aquatic → Freshwater	3.12%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.08%
Peat	Environmental → Terrestrial → Peat	0.52%
Roots	Host-Associated → Plants → Roots	0.52%
Mycelium	Host-Associated → Fungi → Mycelium	0.52%
Grass	Engineered → Solid Waste → Grass	0.52%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.42%
Loam	Environmental → Terrestrial → Soil → Loam	9.90%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	7.81%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.08%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.52%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.52%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.52%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.52%
Composting	Engineered → Solid Waste → Grass → Composting	0.52%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	39.06%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.23%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.42%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	7.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.60%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.08%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.04%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.52%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.52%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.52%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.52%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.52%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.52%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.52%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.52%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.73%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	10.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.38%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	7.81%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.17%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.08%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.08%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.04%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.04%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.52%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.52%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.52%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.52%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.52%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.52%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.52%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.52%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.52%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459018	Litter degradation MG2	Engineered	Open in IMG/M
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011106	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012089	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG	Host-Associated	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014056	Permafrost microbial communities from Nunavut, Canada - A20_5cm_0M	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027102	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF028 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2MG_00973700	2170459018	Switchgrass, Maize And Mischanthus Litter	MFALGVLVLNALSFASLAYIANRKGYHAMAALAAGGAWLFGAASVLVWIWR
2222042793	2209111022	Grass Soil	VIAVVLLNALTFASLAYIANRKGYHAMAALAAAGTWLFGVTGGVLIWGIWR
JGIcombinedJ51221_100519281	3300003505	Forest Soil	MYAVAFVALNALSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLILVWR*
JGIcombinedJ51221_100593842	3300003505	Forest Soil	MFAIAVVLLNALSFASLAYVANRKGYHAMAALAAAGAWLFGVTGGMLI*
JGIcombinedJ51221_100726141	3300003505	Forest Soil	MFALMVVLLNALSFASLAYLANRKGYHAMAALAAAGAWLFGAATVLILYGR*
JGIcombinedJ51221_101179722	3300003505	Forest Soil	MYAVAVVVLNVLSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLILVWR*
JGIcombinedJ51221_102744102	3300003505	Forest Soil	MYAVAVVVLNALSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLILVWR*
Ga0062593_1026916382	3300004114	Soil	IAVVLLNTLSFASLAYLANRKGYHTTAALLAAGAWLFGVAGGVLIWATISR*
Ga0062595_1017212702	3300004479	Soil	MFAVVAVAILITLSFASLAYIASRKGYHTTAAVAAAGAWLFGAISVVIWFWYSR*
Ga0062388_1020492821	3300004635	Bog Forest Soil	MFAVVVVLLNALSFASLAYVANRKGYHAMAALLAAGAWLFGVLAAC*
Ga0070675_1018604462	3300005354	Miscanthus Rhizosphere	MFALAVVVLNAISFASLAYIANRKKHLGMAALAAAGAWLLGIAGVLLWVWR*
Ga0070671_1017154832	3300005355	Switchgrass Rhizosphere	MFAFAVVFLNALSFASLAYIANRKGYHGMAALAAGGAWLFGADDQ*
Ga0070714_1013911061	3300005435	Agricultural Soil	MYAIAVVLLNALDCASLAYIANRKGYHAMAALAAAGAWLFGVTGVLLWVWR*
Ga0070713_1007364282	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MFALAVVVLNALGFASLAYVANRKGYNAMAALAAAGAWLFGVTGVLLWVWR*
Ga0066707_108962022	3300005556	Soil	MYAIAIVLLNALSFASLAYVANRKGYHTMAALAAAGAWLFGVTGGVLIWGLWR*
Ga0070762_105312333	3300005602	Soil	MPLPFMLYAVAVVLLNTLSFASLAYVANRKGRHALAALAAAGAWLFGAASVLIWFWR*
Ga0066903_1029258532	3300005764	Tropical Forest Soil	LIELSLHMFAVTVVLLNTLSFASLAYFANRKGYHTMAALLAAGAWLFGVVGGVLIWATLWR*
Ga0075023_1001929422	3300006041	Watersheds	MYAVAVVVLNALSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLIVAWR*
Ga0075023_1002396041	3300006041	Watersheds	MFAITVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGLLIWGIWR*
Ga0075023_1002692531	3300006041	Watersheds	SRTMYAVAVVVLNALSFTSLAYVANRKGYHTMAALAAAGAWLFGVASVWMILVWR*
Ga0075026_1004464932	3300006057	Watersheds	MSRTMFAVVVVLLNTLSFTSLAYIANRKGYHAMAALAAAGAWLFGVTGGVLIWGIWR*
Ga0075026_1005672132	3300006057	Watersheds	MFAVVVVLLNALSFASLAYVANRKGQHTMAALLAAGAWLFGATSVLVWVWR*
Ga0075017_1004225431	3300006059	Watersheds	MFAVVVVLLNALSFASLAYVANRKGHHALAALLAAGAWLFGAASVLIWFWR*
Ga0075015_1004619761	3300006102	Watersheds	MYAVAVVVLNALSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLI
Ga0075015_1005494912	3300006102	Watersheds	LSLSRTMYAIAVVLLNTLSFASLAYFANRKGYHAMAALAAAGAWLFGATSGLLIWGIWR*
Ga0075015_1010321803	3300006102	Watersheds	MYAVAVVVLNALSFASLAYIANRKGHHTMAALAAAGAWLFGVASVWLILVWR*
Ga0075018_102477391	3300006172	Watersheds	MFAVVVVLLNALSFASLAYVANRKGQHTMAALLAAGAWLFGVTGVLIWVWR*
Ga0075018_106709452	3300006172	Watersheds	MPLPFMLYAVAVVLLNTLSFASLAYVANRKGHHAMAALAAARAWLFGAASVLIWFWR*
Ga0075014_1000535501	3300006174	Watersheds	MFAITVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGVLIWG
Ga0075014_1000704454	3300006174	Watersheds	MFALMVVLLNALSFASLAYLANRKGYHAMAALAAAGAWLFG
Ga0070712_1008120012	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MFAFAVVLLNAVSFASLAYVANRKGHHAMAALAAAGAWLFGVTSVLIWIWR*
Ga0070712_1018427772	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSRTVFALVVVLLNALSFASLAYIANRKGYHGMAALAAGGAWLFGAASVLVWIWR*
Ga0074050_118269382	3300006577	Soil	MFAITVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGMLIWGLWR*
Ga0074049_131187952	3300006580	Soil	MYAVAVVVLNALSFASLAYVANRKGYHTMAALLAAGAWLFGVASVWLILVWR*
Ga0073928_101086845	3300006893	Iron-Sulfur Acid Spring	MYAIAVVLLNALSFASLAYIANRKGYHTMAALAAAGAWLFGVTGGVLIWGIWR*
Ga0073928_101096565	3300006893	Iron-Sulfur Acid Spring	MYAIAVVLLNTLSFVSLAYLANRNGYHTMAALLAAGAWLFGAAGGVLIWGTLWH*
Ga0073928_101170585	3300006893	Iron-Sulfur Acid Spring	MFAVVVVLLNALRFASLAYVANRKGHHALPALLAAGAWLFGAASVLIWFWR*
Ga0073928_101306502	3300006893	Iron-Sulfur Acid Spring	MYAIAVVLLNALSFASLAYVANRKGYHAMAGLAAAGAWLFGVTGGVLIWGGWR*
Ga0073928_101785423	3300006893	Iron-Sulfur Acid Spring	MPLPFMLYAVAVVLLNTLVFASLAYVANRKGHHAMAALAAAGAWLFGAASVLIWFWR*
Ga0102924_10166249	3300007982	Iron-Sulfur Acid Spring	MYAVAVVALNALSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLILVWR*
Ga0102924_10232941	3300007982	Iron-Sulfur Acid Spring	MYAVAVVVLNALSFASLAYVANRKGYHAMAALLAAGAWLFSVASVWLILVWR*
Ga0102924_10810643	3300007982	Iron-Sulfur Acid Spring	MFALMVVLLNALSFASLAYVANRKGYHAMAALAAAGAWLFSAATVLILYGR*
Ga0102924_13196281	3300007982	Iron-Sulfur Acid Spring	MPLPFMLYAVAVVLLNTLVFASLAYVANRKGHHAMAALAAAGAWLFGAASVLIW
Ga0105245_117869031	3300009098	Miscanthus Rhizosphere	MFALAVVVLNALGFASLAYVANRKGYNAMAAMAAAGAWLLGIAGVLLWVWR*
Ga0116218_10260593	3300009522	Peatlands Soil	MYAIAVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGALIWGIWR*
Ga0116218_11684831	3300009522	Peatlands Soil	MYAVAVVVLNALSFTSLAYVANRKGYHTMAALAAAGAWLFGVASVWMILVWR*
Ga0116221_10980241	3300009523	Peatlands Soil	MYAVAVVVLNALSFASLAYVANRKGYHAMAALAAAGAWLFGAATVLILYGR*
Ga0116216_100436923	3300009698	Peatlands Soil	MYAVAVVVLNALSFASLAYVANRKGYHAMAALAAAGAWLFGVTGGVLIWGIWR*
Ga0116217_107632152	3300009700	Peatlands Soil	MYAVAVVVLNALSFASLAYVANRKGYHAMAALAAVGAWLFGVTGGVLIWGIWR*
Ga0126373_119261431	3300010048	Tropical Forest Soil	MYAIAVVLLNALIFASLAYIANRKGYHTMAALAAAGAWLFGVTGGVLIWGIWR*
Ga0127503_109760141	3300010154	Soil	MFAVVVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGLLIWGIWR*
Ga0105239_104799031	3300010375	Corn Rhizosphere	MFAIAVVLLNALSFALLAYIANRKGYHALAALAAAGAWLFGVAGGLLIWGVLWR*
Ga0136449_1012027981	3300010379	Peatlands Soil	MFAVVVVLLNALSFASLAYVANRKGYHAMAALAAAGAWLFGVASVWLILVWR*
Ga0151489_14554541	3300011106	Soil	MFAVVVVLLNAFSFAALAYIANRKGYHAMAALAAAGAWLFRVTGGVLIWGIWR*
Ga0150983_107153762	3300011120	Forest Soil	MSRSTFAIAVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGLLIWGTLWR*
Ga0150983_137350721	3300011120	Forest Soil	MFAVVVVLLNALSFGSLVNRKGQHTMAALLAAGAWLFGVTGVLIWFQR*
Ga0150983_144409341	3300011120	Forest Soil	MFAVVVVLLNALSFASLAYVANRKGQHTMAALLAAGAWLFFGVTGVLVWAWR*
Ga0153924_10933063	3300012089	Attine Ant Fungus Gardens	MYAIAIVLLNTLSFASLAYIANRKGYHSMAALAAGGAWLFGAASVLMWIWR*
Ga0137382_108606142	3300012200	Vadose Zone Soil	AVAVVLLNTLSFASLAYVANRKGYHAMAALAAAGAWLFGVASVLIWFWR*
Ga0164299_105085851	3300012958	Soil	MFAVVVVLLNALSFASLAYIANRKGHHTMAALAAAGAWLFGVASVWLILVWR*
Ga0164301_112812751	3300012960	Soil	MYAVAVVVLNALSFASLAYVANRKGYHAMAALLAAGAWLFGVAGVWLILVWR*
Ga0164309_101483053	3300012984	Soil	MFAVVVVLLNALSFASLAYVANRKGQHAMAALLAAGAWLFGVIGVLIWIWR*
Ga0164309_102585121	3300012984	Soil	MFAVVVVLLNALSSASLAYVANRKGRHAMAALLAAGAWLFGVIGVLIWIWR*
Ga0164308_121692932	3300012985	Soil	MYAVAVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGVLIWGIWR*
Ga0164307_106838533	3300012987	Soil	MYAVAVVVLNALSFASLAYIANRKGYHAMAALLAAGAWLFGA
Ga0164305_116878291	3300012989	Soil	VVVLLNALSFASLAYVVNRKGHHAMAALLAAGAWLFGVAAVLIWFWR*
Ga0164305_121870752	3300012989	Soil	VVVLLNALSFASLAYVANRKGYHAMAALLAAGAWLFSVASVWLILVWR*
Ga0157378_108903552	3300013297	Miscanthus Rhizosphere	MFALAVVVLNALGFASLAYVANRKGYSAMAAMAAAGAWLFGVASVWLILVWR*
Ga0120125_11895502	3300014056	Permafrost	MFAVVVVLLNALSFASLAYVASRKGQHTMAALLAAGAWLFGATGVLIWFWR*
Ga0163163_109888781	3300014325	Switchgrass Rhizosphere	MFAFAVVFLNALSFASLAYIANRKGYHGMAALAAGGAWLFGAASVLVWIWR*
Ga0132258_126569641	3300015371	Arabidopsis Rhizosphere	MFALAVVVLNALSFASLAYIANRKGYNSMAALAAAGAWLFGVTGVLLWGWR*
Ga0132256_1038664031	3300015372	Arabidopsis Rhizosphere	LKLVLTGRGIERVSRTMFALVVVLLNALCFASLAYIANRKGYHAMAALAAGGAWLFGAASVL
Ga0132257_1036370382	3300015373	Arabidopsis Rhizosphere	MFALAVVVLNAISFASLAYIANRKKHLGMAALAAAGAWLLG
Ga0132255_1012514871	3300015374	Arabidopsis Rhizosphere	MFAFAIVLLNALSFASLSYIANRKGYHGTAALAAGGAWLFGAAGVLVWIWR*
Ga0132255_1016614902	3300015374	Arabidopsis Rhizosphere	VLLSTLSFASLAYLANRKGYHTMAALLAAGAWLFGVAGGVLIWATISR*
Ga0182036_114687162	3300016270	Soil	MYAIVVVLLNTLTFAFLAYIADRKGYHAMAALAAAGAWLFGVTGGVLIWGVWR
Ga0182034_113446872	3300016371	Soil	MYAIVVVLLNTLIFAFLAYIADRKGYHAMAALAAARARLFGVTGGVLIWGIWR
Ga0182037_113697291	3300016404	Soil	MYAIAVVLLNALIFASLAYIANRKGYHTMAALAAAGAWLFGMTAGVLIWGIWC
Ga0182037_115763801	3300016404	Soil	MYAVVVVLLNALIFAALAYIANRKGYQAMAALAAAGAWLFGVTGGVLIWGVWR
Ga0187801_102892351	3300017933	Freshwater Sediment	MYAVAFVALNALSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLILVWR
Ga0187801_103283411	3300017933	Freshwater Sediment	MFAVVVVLLNALSFASLAYVANRKGQHTMAALLAAGAWLFGATSVLVWVWR
Ga0187804_102130211	3300018006	Freshwater Sediment	MYAVAVVVLNALSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLILVWR
Ga0187804_102456752	3300018006	Freshwater Sediment	MSRTMFAIAVVLLNTLSFASLAYFANRKGYHAMAALAAAGAWLFGATSGLLIWGIIWR
Ga0210407_100232575	3300020579	Soil	MYAVAVVVLNALSFASLAYIANRKGYHAMAALLAAGAWLFGVASVWLILVWR
Ga0210407_100416937	3300020579	Soil	MFAITVVLLNTLSFASLAYIANRKGYHAMAALAAAGAWLFGVASVWLIVAWR
Ga0210407_100509546	3300020579	Soil	MYAVAVVVLNVLSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLILVWR
Ga0210407_100543612	3300020579	Soil	MFALMVVLLNALSFASLAYLANRKGYHAMAALAAAGAWLFGAATVLILYGR
Ga0210407_101050404	3300020579	Soil	MYAIAVVLLNALSFASLAYIANRKGHHTMAALAAAGAWLFGVASVWLILVWR
Ga0210407_103308552	3300020579	Soil	VVVLLNALSFASLAYVVNRKGHHAMAALLAAGAWLFGVAAVLIWFWR
Ga0210407_104192093	3300020579	Soil	MFAVVVVLLNALSFASLAYVANRKGQHAMAALLAAGAWRFGVTAVLIWFWR
Ga0210407_104487162	3300020579	Soil	MYAIAVVLLNTLSFVSLAYVANRKGYHTMAALLAVGAWLFGAA
Ga0210407_105257212	3300020579	Soil	MVGSVVVVLLNALSFASLAYVANRKGQHTMAALLPAGAWLFGATGVLIWVWR
Ga0210407_105390643	3300020579	Soil	QVDAIAVVLLNTLSFVSLAYVANRKGYHTMAALLAVGAWLFGAAGGVLIWGTLWH
Ga0210407_106885063	3300020579	Soil	NMFAVVVVLLNALSFASLAYVASRKGQHAMAALLAAGTWVFGLTAVLIWFWR
Ga0210407_108185221	3300020579	Soil	MYAIAIVLLNALSFASLAYIANRKGYHTMAALAAAGAWLFGVTGGVLIWGIWR
Ga0210403_103049482	3300020580	Soil	MYAVAVVVLNALSFASLAYLANRKGHHAMAALAAAGAWLFGVTGLLLWFWR
Ga0210403_103973684	3300020580	Soil	MFAVVVVLLNALSFASLAYVANRKGHHALAALLAAGAWLFGAASVLIWFWR
Ga0210403_107239813	3300020580	Soil	TFAIAVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGLLIWGTLWR
Ga0210403_113701081	3300020580	Soil	MYAIAVVLLNTLSFVSLAYVANRKGYHTMAALLAVGAWLFGAAGGVLIWGTLWY
Ga0210399_100981294	3300020581	Soil	MSRTTFAIAVVLLNALSFASLAYIANRKGHYVMAALAAAGAWLFGVTGVLMWVWR
Ga0210399_102236593	3300020581	Soil	MFAVVVVLLNALSFASLAYVVNRKGHHALAALLAAGAWLFGAASVLIWFWR
Ga0210401_101441021	3300020583	Soil	NTLSFTSLAYIANRKGYHAMAALAAAGAWLFGVTGGVLIWGIWR
Ga0210401_112066262	3300020583	Soil	MFGVVVVLLNALSFASLAYVVNRKGQHAMAALLAAGAWLFGVTAVLIWFWR
Ga0210404_100613614	3300021088	Soil	MFAVVVVLLNALSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLILVWR
Ga0210404_107469572	3300021088	Soil	MSRTMFAVVVVLLNTLSFTSLAYIANRKGYHAMAALAAAGAWLFGVTGGVLIWGIW
Ga0210406_103177193	3300021168	Soil	MYAVAVVVLNALSFASLAYVANRKGYYAMAALLAAGAWLFGVASVWLILVWR
Ga0210406_103443081	3300021168	Soil	MVGSVVVVLLNALSFASLAYVANRKGQHTLAALLPAGAWLFGATGVLIWVWR
Ga0210406_106129602	3300021168	Soil	MSRSTFAIAVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGLLIWGTLWR
Ga0210406_107811292	3300021168	Soil	MPLPFMLYAVAVVLLNTLSFASLAYVANRKGHHALAAVAAAGAWLFGAASVLIWFWR
Ga0210406_113064512	3300021168	Soil	MFAVVIVLLNALSFASLAYVANRRGQHTTAALLAAGAWLFGVTGVLIWFWR
Ga0210405_100289659	3300021171	Soil	MPLPFMLYAVAVVLLNTLSFASLAYVANRKGRHALAALAAAGAWLFGAASVLIWFWR
Ga0210408_102469443	3300021178	Soil	MSRTMFAVVVVLLNTLSFTSLAYIANRKGYHAMAALAAAGAWLFGVTGGVLIWGIWR
Ga0210408_102731363	3300021178	Soil	MFAVVVVLLNALSFASLAYVANRKGHHALAALLATGASLFGAASVLIWFWR
Ga0210408_105862961	3300021178	Soil	MFAITVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGVLIWGIWR
Ga0210408_106220402	3300021178	Soil	MSRTMFVVVVVLLNAVSFTSLAYIANRKGYHTMAALAAAGAWLFGVTGGVLIWGIWR
Ga0210408_112528101	3300021178	Soil	MFAVVVVLLNALSFALLAYVANRKGQHAMAALLAAGAWLFGVTAVLIWFWR
Ga0210408_113930962	3300021178	Soil	MFAIAVVLLNALSFASLAYVANRKGYHAMAALAAAGAWLFGVTGGMLI
Ga0210408_114109452	3300021178	Soil	ATDRGALSGLMPLPFMLYAVAVVLLNTLSFASLAYVANRKGHHALAALAAAGAWLFGAASVLIWFWR
Ga0210396_117335901	3300021180	Soil	MPLPFMLYAVAVVLLDTLSFASLAYVANRKGHHALAALAAAGAWLFGAASVLIWFWR
Ga0210388_114222182	3300021181	Soil	MFAVVVVLLNALSFASLAYVANRRGRHTMAAPLAARAWLFGVTGVLIWVTR
Ga0210397_102757732	3300021403	Soil	MPLPFMLYAVAVVLLNTLSFASLAYVANRKGHHALAALAAAGAWLFGAASVLIWFWR
Ga0210397_113434201	3300021403	Soil	MFAITVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGLLI
Ga0210389_114221732	3300021404	Soil	MYAIAIVLLNALSFASLAYIANRKGYHTMAALAAAGAWLFGVTGGVL
Ga0210387_111413632	3300021405	Soil	MFAVVVVLLNALSFASLAYVANRKRQHTMAALLAAGAWLFGVTGVLVWVWR
Ga0210383_117376252	3300021407	Soil	PAGALMSRTMFAIAVVLQNTLSFASLAYFANRKGYHAMAALAAAGAWLFGVISGLLIWGIWR
Ga0210394_107494242	3300021420	Soil	VHGIELSRAMYAVAVVVLNALSFASLAYIANRKGYHAMAALLAAGAWLFGVASVWLILVW
Ga0210384_102036531	3300021432	Soil	IMYAVAVVVLNALSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLILVWR
Ga0210392_103871991	3300021475	Soil	MFAVVVVLLNALSFGSLVNRKGQHTMAALLAAGAWLFGVTGVLIWFQR
Ga0210398_103511093	3300021477	Soil	LNVLSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLILVWR
Ga0210402_101528791	3300021478	Soil	AVAFVALNALSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLILVWR
Ga0210410_103531853	3300021479	Soil	MYAIAVVLLNALSFASLAYIANRKGHHTMAALAAAGAWLFGVASVWLIWVWR
Ga0210410_113219631	3300021479	Soil	LYAVAVVLLNTLSFASLAYVANRKGRHALAALAAAGAWLFGAASVLIWFWR
Ga0210409_104012771	3300021559	Soil	MFAVVVVLLNALSFASLAYIANRKGYHTMAALAAAGAWLFGVTAVLIWFWR
Ga0210409_108993401	3300021559	Soil	MYAVAFVALNALSFASLAHVANRKGYHAMAALLAAGAWLFGVASVWLILVWR
Ga0210409_114692151	3300021559	Soil	MYAIAIVLLNALSFASLAYIANRKGYHTMAALAAAGAWLFG
Ga0242656_10672283	3300022525	Soil	MSRTMFAVVVVLLNTLSFTSLAYIANRKGYHAMAALAAAGAWLFGVTGGVLIGGIWR
Ga0212123_100668247	3300022557	Iron-Sulfur Acid Spring	MYAIAVVLLNALSFASLAYIANRKGYHTMAALAAAGAWLFGVTGGVLIWGIWR
Ga0212123_100906864	3300022557	Iron-Sulfur Acid Spring	MYAVAVVALNALSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLILVWR
Ga0212123_101746502	3300022557	Iron-Sulfur Acid Spring	MYAVAVVVLNALSFASLAYVANRKGYHAMAALLAAGAWLFSVASVWLILVWR
Ga0212123_102391842	3300022557	Iron-Sulfur Acid Spring	MPLPFMLYAVAVVLLNTLVFASLAYVANRKGHHAMAALAAAGAWLFGAASVLIWFWR
Ga0212123_109177622	3300022557	Iron-Sulfur Acid Spring	MYAIAVVLLNALSFASLAYVANRKGYHAMAGLAAAGAWLFGVTGGVLIWGGWR
Ga0242661_11036541	3300022717	Soil	AVVIVLLNALSFASLAYVANRRGQHTTAALLAAGAWLFGVTGVLIWFWR
Ga0242665_100214611	3300022724	Soil	LNALSFASLAYVANRKGYHAMAALLAAGAWLFGVASVWLILVWR
Ga0242665_100993581	3300022724	Soil	MFAVVVVLLNALSFASLAYVANRKGAARHGGPAGGGAWLFAVTGVLIWVWR
Ga0242654_101379642	3300022726	Soil	MYAIAIVLLNALSFASLAYVANRKGYHTMAALAAAGAWLFGVTGGVLIWVWR
Ga0242654_103057281	3300022726	Soil	MFAVVVVLLNALSFASLAYVANRKGYHTMAALAAAGAWLFGVTGVLIWFQR
Ga0228598_10088526	3300024227	Rhizosphere	MYVIAVVLLNALTFASLAYIANRKGYHAMAALAAAGAWLFGVTGGVLIWGIWR
Ga0228598_11036051	3300024227	Rhizosphere	MFAVVVVLLNALSFASLAYVVNRKGHHAMAALLAAGAWLFGV
Ga0209171_103001423	3300025320	Iron-Sulfur Acid Spring	MFAVVVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGV
Ga0207645_103586653	3300025907	Miscanthus Rhizosphere	RTMFALAVVVLNAISFASLAYIANRKKHLGMAALAAAGAWLLGIAGVLLWVWR
Ga0207693_113114431	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSRTVFALVVVLLNALSFASLAYIANRKGYHAMAALAAGGAWLFGAASVLVWIWR
Ga0207690_112221752	3300025932	Corn Rhizosphere	MFALAVVVLNALGFASLAYVANRKGYNAMAAMAAAGAWLFGVTAVLLWIWR
Ga0208365_10217272	3300027070	Forest Soil	MFAVVVVLLNALSFASLACVANRKGQHTMAALLAAGAWLLGVTGVLVWVWR
Ga0208728_1012542	3300027102	Forest Soil	MYAIAVVLLNALSFASLAYVANRKGYHAMAALLAAGAWLFGVTGGVLIWVWR
Ga0208696_12655531	3300027696	Peatlands Soil	QNMFAVVVVLLNALSFASLAYVANRKGYHAMAALAAAGAWLFGVASVWLILVWR
Ga0209380_108625422	3300027889	Soil	MSRTMFAVVVVLLNTLSFTSLAYIANRKGYHAMAALAAAGAWLWVTGGV
Ga0209583_103519901	3300027910	Watersheds	SRTMYAVAVVVLNALSFTSLAYVANRKGYHTMAALAAAGAWLFGVASVWMILVWR
Ga0209583_104044161	3300027910	Watersheds	VVLLNTLSFASLAYIANRKGYHAMAALAAAGAWLFGVASVWLIVAWR
Ga0209698_105000833	3300027911	Watersheds	MYAVAVVVLNALSFTSLAYVANRKGYHTMAALAAAGAWLFGVASVWM
Ga0209069_100512801	3300027915	Watersheds	MFAFAVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGVLIWGIWR
Ga0209069_101042731	3300027915	Watersheds	VVVLNALSFASLAYIANRKGYHAMAALLAAGAWLFGVASVWLILVWR
Ga0209069_107200911	3300027915	Watersheds	MYAVAVVVLNALSFASLAYVANRKGYHAMAALAAAGAWLFGVTGGVLIWGM
Ga0209069_108772451	3300027915	Watersheds	MFAVVVVLLNALSFASLAYVANRKGHHALAALLAAGAWLCGAASVLIWFWR
Ga0308309_115236832	3300028906	Soil	MFALMVVLLNALSFASLAYLANRKGYHAMAALAAAGAWLFGVTGGVLIWGIWR
Ga0310037_100303713	3300030494	Peatlands Soil	MYAVAVVVLNALSFASLAYVANRKGYHAMAALAAAGAWLFGVTGGVLIWGIWR
Ga0310037_100748123	3300030494	Peatlands Soil	MYAVAVVVLNALSFTSLAYVANRKGYHTMAALAAAGAWLFGVASVWMILVWR
Ga0170824_1072705282	3300031231	Forest Soil	MFAVAVVLLNALSFASLAYVANRKGQHTMAALLAAGAWLFGVTGVLIWIWR
Ga0170824_1223375771	3300031231	Forest Soil	MFAVVVVLLNALSFASLAYVVNRKGYHAMAAPAAAGAWLFGVTGGMLIWGLWR
Ga0170824_1223659093	3300031231	Forest Soil	MYAVAVVVLNALSFASLAYLANRKGHHAMAALAAAGAWLFGVTGVLLWFWR
Ga0170818_1110422352	3300031474	Forest Soil	MFAVVVVLLNALSFASLAYVANRKGQHTMAPFLAAGAWLFGVASVWLILVWR
Ga0310686_1005332293	3300031708	Soil	MFAVVVVLLNALSFASLAYIANRKGSHAMAALAAAGAWLFGVTGGVLIWGIWR
Ga0310686_1022240672	3300031708	Soil	MYAIAVVLLNALTFASLAYIANRKGYHAMAALAAAGAWLFGVTGGVLIWGIWR
Ga0310686_1070520133	3300031708	Soil	FAVVVVLLNALSFASLAYVANRKGQHAMAALLAAGAWRFGVTAVLIWFWR
Ga0310686_1072892611	3300031708	Soil	MYAVVVALLNALSFASLAYIANRKGYHTMAALAAAGAWLFGVTGGVLIWG
Ga0310686_1077704533	3300031708	Soil	MFAIVVVLLNALSFASIAYIANRKGHHAMAALAAAGAWLFGVTGVLLWFWR
Ga0310686_1106401893	3300031708	Soil	MFAVVVVLLNALSFASLAYVANRKGQHTMAALLAAGAWLFGVTAVLIWVWR
Ga0310686_1136696372	3300031708	Soil	MYAIAVVLLNALSFALLAYIANRKGYHTMAALAAAGAWLFGVTGGVLIWG
Ga0310686_1140022311	3300031708	Soil	LLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGLLIWGTLWR
Ga0310686_1143294822	3300031708	Soil	MSRSTFAIAVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGMLIWGLWR
Ga0310813_110648582	3300031716	Soil	MFAIAVALLNALSFALLAYIANRKGYHALAALAAAGAWLFGVAGGLLIWGVLWR
Ga0307475_114404982	3300031754	Hardwood Forest Soil	MFAVVVVLLNSLSFASLAYVANRKGYHAMAALAAAGAWLFGVTGVLIWFWR
Ga0306923_110849242	3300031910	Soil	LSSAVQHDVRFVLLNALIFALLAYIANRKGHHTMAALIAAAAWLFGVTGGVLIWGVWR
Ga0306921_105854434	3300031912	Soil	MYAIVVVLLNTLTFAFLAYIADRKGYHAMAALAAAGAWLFGVTGGVLIWGIWR
Ga0306922_118020911	3300032001	Soil	MYAIAVVLLNALIFASLAYIANRKGYHTMAALAAAGAWLFGMTAGVLIWGIWR
Ga0318533_107446823	3300032059	Soil	MFALVVVLLNALSFASLSYVANRKGRYGCSGSGGSMFGVTGGVLIW
Ga0311301_104358074	3300032160	Peatlands Soil	MFAVVVVLLNALSFASLAYVANRKGYHAMAALAAAGAWLFGVASVWLILVWR
Ga0311301_117587141	3300032160	Peatlands Soil	MYAIAVVLLNALSFASLAYIANRKGYHAMAALAAAGAWLFGVTGGALIWGIWR
Ga0307471_1036610772	3300032180	Hardwood Forest Soil	MFAVVVVLLNALSFASLAYVVNRKGQHTMAALLAAGAWLFGVHF
Ga0307471_1039848601	3300032180	Hardwood Forest Soil	MFAIAVVLLNTLSFASLAYVANRKGHHAMAALAAAGAWLFGVTGLLLWFWR
Ga0307472_1020721521	3300032205	Hardwood Forest Soil	MFAVVVVLLNALSFASLAYVANRKGQHTMAALLAAGAWLFGVTGVLVWFWR
Ga0306920_1034293891	3300032261	Soil	MYAIVVVLLNTLTFAFLAYIADRKGYHAMAALAAAGAWLFGVTGGVL
Ga0326726_112969292	3300033433	Peat Soil	MFAVVVVLLNALSFASLAYVANRKGQHTLAALLAAGAWLFGVTSVLIWVWR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F028290

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences