NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F029260

Metagenome / Metatranscriptome Family F029260

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F029260
Family Type Metagenome / Metatranscriptome
Number of Sequences 189
Average Sequence Length 49 residues
Representative Sequence MAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSGDAVRLRPERLGR
Number of Associated Samples 165
Number of Associated Scaffolds 189

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 94.18 %
% of genes near scaffold ends (potentially truncated) 98.41 %
% of genes from short scaffolds (< 2000 bps) 89.42 %
Associated GOLD sequencing projects 160
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (99.471 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(11.111 % of family members)
Environment Ontology (ENVO) Unclassified
(30.688 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(35.979 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 12.00%    β-sheet: 8.00%    Coil/Unstructured: 80.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 189 Family Scaffolds
PF01557FAA_hydrolase 91.01
PF00903Glyoxalase 2.12
PF10370DUF2437 1.59
PF01575MaoC_dehydratas 0.53
PF00501AMP-binding 0.53
PF13561adh_short_C2 0.53
PF01266DAO 0.53
PF13669Glyoxalase_4 0.53
PF13379NMT1_2 0.53
PF13560HTH_31 0.53
PF05598DUF772 0.53


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms99.47 %
UnclassifiedrootN/A0.53 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459005|F1BAP7Q01EZ3T2All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300000890|JGI11643J12802_11433376All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300001139|JGI10220J13317_10194194All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300001661|JGI12053J15887_10259201All Organisms → cellular organisms → Bacteria861Open in IMG/M
3300001661|JGI12053J15887_10338763All Organisms → cellular organisms → Bacteria729Open in IMG/M
3300002121|C687J26615_10027075All Organisms → cellular organisms → Bacteria1417Open in IMG/M
3300002123|C687J26634_10130087All Organisms → cellular organisms → Bacteria884Open in IMG/M
3300002124|C687J26631_10112261All Organisms → cellular organisms → Bacteria921Open in IMG/M
3300002155|JGI24033J26618_1064329All Organisms → cellular organisms → Bacteria544Open in IMG/M
3300002407|C687J29651_10060445All Organisms → cellular organisms → Bacteria1334Open in IMG/M
3300002886|JGI25612J43240_1021744All Organisms → cellular organisms → Bacteria947Open in IMG/M
3300002907|JGI25613J43889_10157320All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300003349|JGI26129J50193_1013051All Organisms → cellular organisms → Bacteria609Open in IMG/M
3300004020|Ga0055440_10145066All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300004020|Ga0055440_10207907All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300004047|Ga0055499_10066112All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300004156|Ga0062589_100084707All Organisms → cellular organisms → Bacteria1950Open in IMG/M
3300004156|Ga0062589_100405731All Organisms → cellular organisms → Bacteria1109Open in IMG/M
3300004479|Ga0062595_100329722All Organisms → cellular organisms → Bacteria1049Open in IMG/M
3300005093|Ga0062594_100802439All Organisms → cellular organisms → Bacteria870Open in IMG/M
3300005280|Ga0065696_1401213All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300005295|Ga0065707_11050579All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300005354|Ga0070675_100547557All Organisms → cellular organisms → Bacteria1046Open in IMG/M
3300005406|Ga0070703_10093782All Organisms → cellular organisms → Bacteria1046Open in IMG/M
3300005440|Ga0070705_100734733All Organisms → cellular organisms → Bacteria → Proteobacteria779Open in IMG/M
3300005445|Ga0070708_101803243All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300005451|Ga0066681_10514731All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300005468|Ga0070707_101062118All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300005468|Ga0070707_102163794All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300005518|Ga0070699_100078849Not Available2868Open in IMG/M
3300005546|Ga0070696_101604564All Organisms → cellular organisms → Bacteria559Open in IMG/M
3300005546|Ga0070696_101841157All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300005558|Ga0066698_10992019All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300005617|Ga0068859_100072556All Organisms → cellular organisms → Bacteria → Proteobacteria3479Open in IMG/M
3300005829|Ga0074479_10720206All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300005878|Ga0075297_1037514All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300005985|Ga0081539_10282527All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300006058|Ga0075432_10262907All Organisms → cellular organisms → Bacteria704Open in IMG/M
3300006163|Ga0070715_10161025All Organisms → cellular organisms → Bacteria1109Open in IMG/M
3300006581|Ga0074048_11852785All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300006847|Ga0075431_101571413All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300006871|Ga0075434_100102820All Organisms → cellular organisms → Bacteria2865Open in IMG/M
3300006871|Ga0075434_102362490All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300006881|Ga0068865_100731861All Organisms → cellular organisms → Bacteria848Open in IMG/M
3300006881|Ga0068865_101735911All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300006914|Ga0075436_100447713All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria940Open in IMG/M
3300007258|Ga0099793_10055413All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1761Open in IMG/M
3300009088|Ga0099830_10019176All Organisms → cellular organisms → Bacteria4416Open in IMG/M
3300009137|Ga0066709_103560158All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300009153|Ga0105094_10187726All Organisms → cellular organisms → Bacteria1182Open in IMG/M
3300009174|Ga0105241_12112010All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300009792|Ga0126374_11004049All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300009795|Ga0105059_1020789All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300009807|Ga0105061_1029425All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria769Open in IMG/M
3300009814|Ga0105082_1038839All Organisms → cellular organisms → Bacteria778Open in IMG/M
3300010046|Ga0126384_10371019All Organisms → cellular organisms → Bacteria1199Open in IMG/M
3300010046|Ga0126384_11335766All Organisms → cellular organisms → Bacteria666Open in IMG/M
3300010336|Ga0134071_10186513All Organisms → cellular organisms → Bacteria1020Open in IMG/M
3300010358|Ga0126370_10438888All Organisms → cellular organisms → Bacteria1085Open in IMG/M
3300010358|Ga0126370_10862230All Organisms → cellular organisms → Bacteria814Open in IMG/M
3300010359|Ga0126376_12580839All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300010360|Ga0126372_10276294All Organisms → cellular organisms → Bacteria1459Open in IMG/M
3300010360|Ga0126372_10562211All Organisms → cellular organisms → Bacteria1086Open in IMG/M
3300010362|Ga0126377_11646100All Organisms → cellular organisms → Bacteria717Open in IMG/M
3300010400|Ga0134122_11786504All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300011269|Ga0137392_10110540All Organisms → cellular organisms → Bacteria2179Open in IMG/M
3300011270|Ga0137391_11227036All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300012022|Ga0120191_10066184All Organisms → cellular organisms → Bacteria671Open in IMG/M
3300012096|Ga0137389_10204941All Organisms → cellular organisms → Bacteria1644Open in IMG/M
3300012202|Ga0137363_10937396All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300012202|Ga0137363_11805250All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300012208|Ga0137376_10478520All Organisms → cellular organisms → Bacteria1081Open in IMG/M
3300012211|Ga0137377_10104429All Organisms → cellular organisms → Bacteria2687Open in IMG/M
3300012350|Ga0137372_10694444All Organisms → cellular organisms → Bacteria737Open in IMG/M
3300012351|Ga0137386_10955148All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300012353|Ga0137367_10041181All Organisms → cellular organisms → Bacteria3516Open in IMG/M
3300012353|Ga0137367_10549985All Organisms → cellular organisms → Bacteria811Open in IMG/M
3300012358|Ga0137368_10314218All Organisms → cellular organisms → Bacteria1054Open in IMG/M
3300012361|Ga0137360_11310284All Organisms → cellular organisms → Bacteria625Open in IMG/M
3300012362|Ga0137361_10497259All Organisms → cellular organisms → Bacteria1120Open in IMG/M
3300012532|Ga0137373_10395565All Organisms → cellular organisms → Bacteria1074Open in IMG/M
3300012685|Ga0137397_10186440All Organisms → cellular organisms → Bacteria1542Open in IMG/M
3300012685|Ga0137397_10281963All Organisms → cellular organisms → Bacteria1238Open in IMG/M
3300012899|Ga0157299_10059573All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium883Open in IMG/M
3300012909|Ga0157290_10061978All Organisms → cellular organisms → Bacteria1002Open in IMG/M
3300012930|Ga0137407_12176149All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300012931|Ga0153915_12518918All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300012987|Ga0164307_10513926All Organisms → cellular organisms → Bacteria907Open in IMG/M
3300014885|Ga0180063_1016115All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria2014Open in IMG/M
3300014885|Ga0180063_1203677All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300015077|Ga0173483_10119618All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1124Open in IMG/M
3300015262|Ga0182007_10131631All Organisms → cellular organisms → Bacteria841Open in IMG/M
3300015371|Ga0132258_11236624All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1888Open in IMG/M
3300015372|Ga0132256_100496238All Organisms → cellular organisms → Bacteria1331Open in IMG/M
3300015374|Ga0132255_101973544All Organisms → cellular organisms → Bacteria888Open in IMG/M
3300017659|Ga0134083_10303319All Organisms → cellular organisms → Bacteria678Open in IMG/M
3300017792|Ga0163161_10263628All Organisms → cellular organisms → Bacteria1346Open in IMG/M
3300017973|Ga0187780_10963363All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300017997|Ga0184610_1002858All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria3930Open in IMG/M
3300018028|Ga0184608_10019652All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria2437Open in IMG/M
3300018078|Ga0184612_10073415All Organisms → cellular organisms → Bacteria → Proteobacteria1784Open in IMG/M
3300018422|Ga0190265_10095471All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria2769Open in IMG/M
3300019229|Ga0180116_1091926All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300019883|Ga0193725_1018604All Organisms → cellular organisms → Bacteria1909Open in IMG/M
3300020066|Ga0180108_1154985All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300020068|Ga0184649_1448086All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300020081|Ga0206354_10624416All Organisms → cellular organisms → Bacteria871Open in IMG/M
3300021073|Ga0210378_10043092All Organisms → cellular organisms → Bacteria1784Open in IMG/M
3300021081|Ga0210379_10007446All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria4011Open in IMG/M
3300025157|Ga0209399_10435892All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300025164|Ga0209521_10083148All Organisms → cellular organisms → Bacteria2085Open in IMG/M
3300025289|Ga0209002_10746440All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300025551|Ga0210131_1065780All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300025893|Ga0207682_10269563All Organisms → cellular organisms → Bacteria795Open in IMG/M
3300025910|Ga0207684_10390613All Organisms → cellular organisms → Bacteria1196Open in IMG/M
3300025923|Ga0207681_11182499All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300025926|Ga0207659_11313736All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae621Open in IMG/M
3300025934|Ga0207686_10695788All Organisms → cellular organisms → Bacteria808Open in IMG/M
3300025935|Ga0207709_10098819All Organisms → cellular organisms → Bacteria1925Open in IMG/M
3300025938|Ga0207704_10647017All Organisms → cellular organisms → Bacteria870Open in IMG/M
3300025938|Ga0207704_11465642All Organisms → cellular organisms → Bacteria585Open in IMG/M
3300025960|Ga0207651_10518910All Organisms → cellular organisms → Bacteria1032Open in IMG/M
3300026011|Ga0208532_1001674All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1018Open in IMG/M
3300026088|Ga0207641_10632231All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1050Open in IMG/M
3300026088|Ga0207641_11040055All Organisms → cellular organisms → Bacteria816Open in IMG/M
3300026088|Ga0207641_11531664All Organisms → cellular organisms → Bacteria668Open in IMG/M
3300026318|Ga0209471_1258086All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300026333|Ga0209158_1252454All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300026354|Ga0257180_1070241All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300026358|Ga0257166_1015893All Organisms → cellular organisms → Bacteria968Open in IMG/M
3300026361|Ga0257176_1000302All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria2940Open in IMG/M
3300026361|Ga0257176_1021817All Organisms → cellular organisms → Bacteria930Open in IMG/M
3300026371|Ga0257179_1000433All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria2272Open in IMG/M
3300026376|Ga0257167_1025751All Organisms → cellular organisms → Bacteria861Open in IMG/M
3300026446|Ga0257178_1036587All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300026446|Ga0257178_1042276All Organisms → cellular organisms → Bacteria585Open in IMG/M
3300026452|Ga0256821_1030466All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300026490|Ga0257153_1038278All Organisms → cellular organisms → Bacteria989Open in IMG/M
3300027187|Ga0209869_1007563All Organisms → cellular organisms → Bacteria1171Open in IMG/M
3300027378|Ga0209981_1025609All Organisms → cellular organisms → Bacteria854Open in IMG/M
3300027383|Ga0209213_1106448All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300027388|Ga0208995_1023057All Organisms → cellular organisms → Bacteria1080Open in IMG/M
3300027527|Ga0209684_1016330All Organisms → cellular organisms → Bacteria1155Open in IMG/M
3300027663|Ga0208990_1139014All Organisms → cellular organisms → Bacteria648Open in IMG/M
3300027678|Ga0209011_1082136All Organisms → cellular organisms → Bacteria952Open in IMG/M
3300027695|Ga0209966_1043256All Organisms → cellular organisms → Bacteria944Open in IMG/M
3300027738|Ga0208989_10091514All Organisms → cellular organisms → Bacteria1038Open in IMG/M
3300027775|Ga0209177_10057149All Organisms → cellular organisms → Bacteria1125Open in IMG/M
(restricted) 3300027799|Ga0233416_10284944All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300027815|Ga0209726_10110036All Organisms → cellular organisms → Bacteria1638Open in IMG/M
3300027862|Ga0209701_10150211All Organisms → cellular organisms → Bacteria1423Open in IMG/M
3300027876|Ga0209974_10035765All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caenimonas → unclassified Caenimonas → Caenimonas sp. SL1101649Open in IMG/M
(restricted) 3300027995|Ga0233418_10394981All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300028380|Ga0268265_10498137All Organisms → cellular organisms → Bacteria1147Open in IMG/M
3300028792|Ga0307504_10119109All Organisms → cellular organisms → Bacteria863Open in IMG/M
3300028828|Ga0307312_10505875All Organisms → cellular organisms → Bacteria797Open in IMG/M
3300028828|Ga0307312_10655588All Organisms → cellular organisms → Bacteria695Open in IMG/M
3300030620|Ga0302046_11083078All Organisms → cellular organisms → Bacteria634Open in IMG/M
(restricted) 3300031150|Ga0255311_1002819All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria3282Open in IMG/M
3300031543|Ga0318516_10011480All Organisms → cellular organisms → Bacteria4295Open in IMG/M
3300031564|Ga0318573_10015074All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium3371Open in IMG/M
3300031681|Ga0318572_10506209All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300031713|Ga0318496_10237960All Organisms → cellular organisms → Bacteria1003Open in IMG/M
3300031720|Ga0307469_10025362All Organisms → cellular organisms → Bacteria3324Open in IMG/M
3300031720|Ga0307469_10152244All Organisms → cellular organisms → Bacteria1733Open in IMG/M
3300031720|Ga0307469_10934513All Organisms → cellular organisms → Bacteria805Open in IMG/M
3300031744|Ga0306918_10332355All Organisms → cellular organisms → Bacteria1176Open in IMG/M
3300031769|Ga0318526_10425556All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300031799|Ga0318565_10438634All Organisms → cellular organisms → Bacteria632Open in IMG/M
3300031846|Ga0318512_10017988All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2872Open in IMG/M
3300031860|Ga0318495_10445802All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300031897|Ga0318520_10557900All Organisms → cellular organisms → Bacteria710Open in IMG/M
3300031942|Ga0310916_11572811All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300031949|Ga0214473_10345495All Organisms → cellular organisms → Bacteria1689Open in IMG/M
3300032091|Ga0318577_10123359All Organisms → cellular organisms → Bacteria1224Open in IMG/M
3300032174|Ga0307470_10508956All Organisms → cellular organisms → Bacteria880Open in IMG/M
3300032174|Ga0307470_11723550All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300032177|Ga0315276_10410397All Organisms → cellular organisms → Bacteria1451Open in IMG/M
3300032180|Ga0307471_103287857All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300032180|Ga0307471_104069922All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300032205|Ga0307472_100332927All Organisms → cellular organisms → Bacteria1237Open in IMG/M
3300032516|Ga0315273_11694872All Organisms → cellular organisms → Bacteria766Open in IMG/M
3300033004|Ga0335084_10370531All Organisms → cellular organisms → Bacteria1477Open in IMG/M
3300033433|Ga0326726_11723683All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300033486|Ga0316624_10723108All Organisms → cellular organisms → Bacteria878Open in IMG/M
3300033550|Ga0247829_11337528All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300033813|Ga0364928_0135977All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300034165|Ga0364942_0091932All Organisms → cellular organisms → Bacteria980Open in IMG/M
3300034643|Ga0370545_085351All Organisms → cellular organisms → Bacteria667Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil11.11%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.58%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.82%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.29%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.76%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.23%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.17%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment2.65%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.65%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.65%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment2.12%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.12%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.12%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil2.12%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand2.12%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere2.12%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.12%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.59%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.59%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.59%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.06%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.06%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.06%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil1.06%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.06%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.06%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.06%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.06%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.53%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.53%
SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment0.53%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.53%
Thermal SpringsEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs0.53%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.53%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.53%
TerrestrialEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial0.53%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.53%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.53%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.53%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.53%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.53%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.53%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.53%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.53%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.53%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.53%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.53%
Switchgrass Rhizosphere Bulk SoilHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere Bulk Soil0.53%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.53%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.53%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.53%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.53%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.53%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.53%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459005Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cmEnvironmentalOpen in IMG/M
3300000890Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300001139Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002121Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1EnvironmentalOpen in IMG/M
3300002123Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_3EnvironmentalOpen in IMG/M
3300002124Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3EnvironmentalOpen in IMG/M
3300002155Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7Host-AssociatedOpen in IMG/M
3300002407Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1EnvironmentalOpen in IMG/M
3300002886Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cmEnvironmentalOpen in IMG/M
3300002907Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cmEnvironmentalOpen in IMG/M
3300003349Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PMHost-AssociatedOpen in IMG/M
3300004020Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2EnvironmentalOpen in IMG/M
3300004047Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005280Switchgrass rhizosphere microbial community from Michigan, USA - East Lansing bulk soilHost-AssociatedOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005829Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBCEnvironmentalOpen in IMG/M
3300005878Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104EnvironmentalOpen in IMG/M
3300005985Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006581Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009153Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015EnvironmentalOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300009795Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_40_50EnvironmentalOpen in IMG/M
3300009807Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10EnvironmentalOpen in IMG/M
3300009814Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012022Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2EnvironmentalOpen in IMG/M
3300012909Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300014885Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10DEnvironmentalOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015262Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017997Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coexEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coexEnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300019229Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_1_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019883Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2EnvironmentalOpen in IMG/M
3300020066Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT45_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020068Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020081Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300021073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redoEnvironmentalOpen in IMG/M
3300021081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redoEnvironmentalOpen in IMG/M
3300025157Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3 (SPAdes)EnvironmentalOpen in IMG/M
3300025164Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4EnvironmentalOpen in IMG/M
3300025289Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2EnvironmentalOpen in IMG/M
3300025551Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025893Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026011Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301 (SPAdes)EnvironmentalOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026318Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300026354Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-BEnvironmentalOpen in IMG/M
3300026358Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-BEnvironmentalOpen in IMG/M
3300026361Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-BEnvironmentalOpen in IMG/M
3300026371Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-BEnvironmentalOpen in IMG/M
3300026376Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-BEnvironmentalOpen in IMG/M
3300026446Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-BEnvironmentalOpen in IMG/M
3300026452Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4EnvironmentalOpen in IMG/M
3300026490Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-AEnvironmentalOpen in IMG/M
3300027187Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60 (SPAdes)EnvironmentalOpen in IMG/M
3300027378Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027383Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027388Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027527Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027663Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027678Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027695Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027738Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027799 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MGEnvironmentalOpen in IMG/M
3300027815Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027876Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027995 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_1_MGEnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300030620Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111EnvironmentalOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031799Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031860Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031949Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032177Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032516Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300033486Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_AEnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300033813Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17EnvironmentalOpen in IMG/M
3300034165Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17EnvironmentalOpen in IMG/M
3300034643Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
E41_052340602170459005Grass SoilMPVRSLLHYALEVPDQSIGQRYYRDFGLADESGRG
JGI11643J12802_1143337623300000890SoilMAVKSLLHYALEVPDQAVGQRYYRDFGLADATGGGNAVRLRAPRQSRDN
JGI10220J13317_1019419413300001139SoilMAVKALLHYALEVPDQSVGQRYYRDFGLAETAGGNVVRLRAPRQPRDNVLL
JGI12053J15887_1025920123300001661Forest SoilMAIRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSEAVR
JGI12053J15887_1033876313300001661Forest SoilMAVRSLLHYALEVPDQALGQRYYQDFGLVDESGRGAAVR
C687J26615_1002707513300002121SoilMAVRSFLHYALEVPDQTVGQTYYHDFGLVDATGGGEA
C687J26634_1013008713300002123SoilMAVRSFLHYALEVPDQTVGQKYYQDFGLVDATGNGQAVRLKPARQAREAVLLYPGPRKRLHHLCYGAPG
C687J26631_1011226123300002124SoilVAVKSFLHYALEVPDQAVGQKYYEDFGLVDATGKSNTVRLKPARHSREAVLLYPGPRKR
JGI24033J26618_106432913300002155Corn, Switchgrass And Miscanthus RhizosphereMAVRTFLHYALEVPDQTVGQRFYEDFGLMDGTGSSDAVRLRPEGHGRDVVLLYG
C687J29651_1006044523300002407SoilMAVRSFLHYALEVPDQTVGQTYYHDFGLVDATGGSEAVRLKPARQTREAVMLYAGPRKRLHHLCYGASGEDFA
JGI25612J43240_102174423300002886Grasslands SoilMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSDAVRLRPERLGRDTVLLYGGPRKR
JGI25613J43889_1015732013300002907Grasslands SoilMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSDAVRLRPE
JGI26129J50193_101305123300003349Arabidopsis Thaliana RhizosphereMAVRSFLHYALEVPDPTVGQRFYEDFGLVDGGASGDSVRLRPER
Ga0055440_1014506613300004020Natural And Restored WetlandsMAVSSFLHYALEVPDQTVGQKYYQDFGLVDASGNGQAVRLKTARQSREAVQLYAGPRKR
Ga0055440_1020790723300004020Natural And Restored WetlandsMPVRSLLHYALEVPDQTIGQRYYRDFGLSDDSARGPVVRLRPAR
Ga0055499_1006611223300004047Natural And Restored WetlandsMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSNAVRLRPERLGRDAVL
Ga0062589_10008470733300004156SoilMAVKSLLHYALEVPDQAVGQRYYRDFGLADATGSGNAVRLRAPRQSRDNVLLYEGPRKR
Ga0062589_10040573123300004156SoilMAVKALLHYALEVPDQSVGQRYYRDFGLAETAGGNVVRLRAPRQ
Ga0062595_10032972213300004479SoilMPVRSLLHYALEVPDQAVGQRYYRDFGLADESGQGPAVRLRPARQTRESVLLYEG
Ga0062594_10080243933300005093SoilMPVRSLLHYALEIPDQQIGQRYYSDFGFQDVTGASNTVRLRPSTLEREQI
Ga0065696_140121313300005280Switchgrass Rhizosphere Bulk SoilMAVKALLHYALEVPDQSVGQRYYRDFGLAETAGGNVVRLRAPRQP
Ga0065707_1105057923300005295Switchgrass RhizosphereMAIRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSEAVRLRPE
Ga0070675_10054755713300005354Miscanthus RhizosphereMAVRTFLHYALEVPDQTVGQRFYEDFGLMDGTGSSDAVRLRPEGHGRDAV
Ga0070703_1009378213300005406Corn, Switchgrass And Miscanthus RhizosphereMAVRTFLHYALEVPDQTVGQRFYEDFGLVDSTGRSDAVRLRPERLGRDAVLLYG
Ga0070705_10073473323300005440Corn, Switchgrass And Miscanthus RhizosphereMAVRSFLHYALEVPDQTVGQRFYEDFGLVDGTGSSDAVRL
Ga0070708_10180324323300005445Corn, Switchgrass And Miscanthus RhizosphereMAVRSFLHYALEVPDQAVGQRYYEDFGLVDVTGGDKAVRLKPARQDRET
Ga0066681_1051473123300005451SoilMAVRSLLHYALEVPDQSLGQRYYQDFGLVDESGRGAAVRLRPARQSRE
Ga0070707_10106211813300005468Corn, Switchgrass And Miscanthus RhizosphereMAVRTFLHYALEVPDQTIGQRFYEDFGLVDGTGSSDAVRLRPDRLGRDAVLLYG
Ga0070707_10216379423300005468Corn, Switchgrass And Miscanthus RhizosphereMPVRSLLHYALEVPDQAVGQRYYRDFGLADESGRGPAVRLRPARQTRESVLLYEGPR
Ga0070699_10007884913300005518Corn, Switchgrass And Miscanthus RhizosphereMPVRSLLHYALEIPDQQIGQRYYSDFGFQDVTGASNTVRLRPSTLEREQ
Ga0070696_10160456413300005546Corn, Switchgrass And Miscanthus RhizosphereMAVRALLHYALEVPDQTVGQRYYQNFGLADATGASDAVRLRADRQHRPCV
Ga0070696_10184115713300005546Corn, Switchgrass And Miscanthus RhizosphereMAVRSFLHYALEVPDQTIGQRFYEDFGLVDGTGSSDAVRLRPDR
Ga0066698_1099201913300005558SoilMPIRSLLHYALEVPDQSVGQRYYRDFGLADEASRGAAVRLRAGRQSRESVLLYEGPRK
Ga0068859_10007255663300005617Switchgrass RhizosphereMAVRSFLHYALEVPDQAVGQRYYEDFGLVDVTGGDKA
Ga0074479_1072020613300005829Sediment (Intertidal)MAVRSFLHYALEVPDQTLGQRYYQDFGLVDAGGNGQAVRLKPARQSREAVQLYAGPRKRLHHLCYGAAGDDFVQTRKALAAM
Ga0075297_103751423300005878Rice Paddy SoilMAVRTFLHYALEVPDQTVGQRFYEDFGLVDGTGRSDAVRLRPERHGRDAVLLYGG
Ga0081539_1028252723300005985Tabebuia Heterophylla RhizosphereMAVRSFLHYALEVPDQTVGQRFYEDFGLVDGSGSSEAVRLRPEALGRDAVLLY
Ga0075432_1026290713300006058Populus RhizosphereMAVKSLLHYALEVPDQAVGQRYYRDFGLADATGSGNAVRLRAPRQSRDNVLL
Ga0070715_1016102513300006163Corn, Switchgrass And Miscanthus RhizosphereMPVRSLLHYALEVPDQAVGQRYYRDFGLADESGRGPAVRLRPARQARESVLLYEGP
Ga0074048_1185278523300006581SoilMAVRSFLHYALEVPDQAVGQRYYEDFGLVDVTGGGKAVRLKPARQDRE
Ga0075431_10157141323300006847Populus RhizosphereMAVRTFLHYALEVPDQTVGQRFYEDFGLMDGAGSRDAVRLRPEGHGRDAVLLY
Ga0075434_10010282063300006871Populus RhizosphereMAVKSLLHYALEVPDQAVGQRYYRDFGLADATGGGNAVRLRAPRQSRDNVLLYEGPRK
Ga0075434_10236249013300006871Populus RhizosphereMPVRSLLHYALEVPDQAVGQRYYRDFGLADESSQGPAVRLRPARQT
Ga0068865_10073186123300006881Miscanthus RhizosphereMAVRTFLHYALEVPDQTVGQRFYEDFGLMDGTGSSDAVRLR
Ga0068865_10173591123300006881Miscanthus RhizosphereMAVRSFLHYALEVPDQTVGQRFYEDFGLVDGTGASDAVRLRPERLGRDIVLLYGGP
Ga0075436_10044771323300006914Populus RhizosphereMAVRSLLHYALEVPDQAVGQRYYRDFGLADDSGGDAAVRLRPTRQSRESVLLYE
Ga0099793_1005541333300007258Vadose Zone SoilMPVRSLLHYALEVPDQSVGQRYYRDFGPADESGRGA
Ga0099830_1001917613300009088Vadose Zone SoilMPVRSLLHYALEVPDQTLGQRYYQDFGLVDESGRGAAVRLRTARQTRESVQLYEGPRKR
Ga0066709_10356015813300009137Grasslands SoilMAVRSLLHYALEVPDQSLGQRYYQDFGLVDESGRGAA
Ga0105094_1018772623300009153Freshwater SedimentMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSDAVRLGP*
Ga0105241_1211201013300009174Corn RhizosphereMAVRSFLHYALEVPDQTVGQRFYEDFGLVDGTGASDA
Ga0126374_1100404923300009792Tropical Forest SoilMAVKSLLHYALEVPDQAVGQRYYRDFGLADATGSGNAVRLRAPRQSRDNVLLYEGP
Ga0105059_102078923300009795Groundwater SandMAVRSFLHYALEVPDQTIGQRFYEDFGLVDGTERGD
Ga0105061_102942513300009807Groundwater SandMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGASDAVRLRPERLG
Ga0105082_103883913300009814Groundwater SandMAVRSFLHYALEVPDQTVGQRFYEDFGLVDGTERGDAVRLRPARLGRESVLLYGGARKR
Ga0126384_1037101933300010046Tropical Forest SoilMPVTSFLHYALEVPDQAIGQKYYEDFGLVDATGGSEAV
Ga0126384_1133576613300010046Tropical Forest SoilMAVKSLLHYALEVPDQAVGQRYYHDFGLADATGSGNA
Ga0134071_1018651323300010336Grasslands SoilMPVRSLLHYALEVPDQTLGQRYYQDFGLVDESGRGAAVRLRTARQTRESVQLYEGPRKRLHHLCF
Ga0126370_1043888823300010358Tropical Forest SoilMAVRSLLHYALEVPDQTVGQRYYRDFGLADDSRGGAAVRLR
Ga0126370_1086223013300010358Tropical Forest SoilMPVRSLLHYALEVPDQSVGQRYYRDFGLADDSGRGPAVRLRPAKQGRESVLLYEGPRKRL
Ga0126376_1258083913300010359Tropical Forest SoilMPVRSFLHYALEVPDQAVGQKYYRDFGLAEANGGGD
Ga0126372_1027629433300010360Tropical Forest SoilMAVRTFLHYALEVPDQAVGQRFYEDFGLVDGTGSSDAVRLRPERLARDAVLLYGGAR
Ga0126372_1056221123300010360Tropical Forest SoilMAVRSLLHYALEVPDQAVGQRYYRDFGLADDSRGGAAVRLRPAHQGRESVLLYEGPR
Ga0126377_1164610023300010362Tropical Forest SoilMAVRSLLHYALEVPDQTVGQRYYRDFGLADDSRGGAAVRLRPTHRRRESVLLYEGPRKRL
Ga0134122_1178650423300010400Terrestrial SoilMAVRSFLHYALEVPDQAVGQRYYEDFGLVDITGGDKAVRLKPARQDREAVLLYEG
Ga0137392_1011054033300011269Vadose Zone SoilMAVRSLLHYALEVPDQALGQRYYQDFGLVDESGRGAAVRLRPARQSRESVQLYEGP
Ga0137391_1122703623300011270Vadose Zone SoilMPVRSLLHYALEVPDQAVGQRYYRDFGLAEDSGRGPAV
Ga0120191_1006618423300012022TerrestrialMAVKSLLHYALEVPDQAVGQRYYRDFGLADALGGRQ
Ga0137389_1020494133300012096Vadose Zone SoilMAVRTFLHYALEVPDLTVGQRLYEDFGLVDGTGRSDAVRLRPERLGRDTVLLYGG
Ga0137363_1093739623300012202Vadose Zone SoilMPVRSLLHYALEVPDQAVGQRYYRDFGLADESGRGPAVRLRPARQTRESVLL
Ga0137363_1180525023300012202Vadose Zone SoilMAVRSLLHYALEVPDQSLGQRYYQDFGLVDESGRGAAVRLPPARQSRESVQLYEGPRKRL
Ga0137376_1047852013300012208Vadose Zone SoilMAVRTFLHYALEVPDLTVGQRFYEDFGLVDGTGRSDSVRLRPERFGR
Ga0137377_1010442913300012211Vadose Zone SoilMAVRSLLHYALEVPDQSLGQRYYQDFGLVDESGRGAAVRLRPA
Ga0137372_1069444413300012350Vadose Zone SoilMPVRSLLHYALEVPDQAVGQRYYRDFGLADDSGRGPAVRLRPARQTRESVLLYEGPRKRL
Ga0137386_1095514813300012351Vadose Zone SoilMPVRSLLHYALEVPDQAVGQRYYRDFGLADDSGRGPAVRLRPARQTRESVLLYEGPRKRLQHLCFGATGEDFART
Ga0137367_1004118163300012353Vadose Zone SoilMPVRSLLHYALEVPDQAVGQRYYRDFGLADDSGRGPAVRLRPARQTRESVLLYEGPR
Ga0137367_1054998523300012353Vadose Zone SoilMPVRSLLHYALEVPDQSVGQRYYRDFGLADESGRGPAVRLRPARQSRESVLLY
Ga0137368_1031421823300012358Vadose Zone SoilMPVRSLLHYALEVPDQAVGQRYYRDFGLADDSGRGPAVRLRPARQT
Ga0137360_1131028413300012361Vadose Zone SoilMAVRTFLHYALEVPDLTVGQRFYEDFGLVDDTGRSDAVRLRPERLGRDTVLLYGGARKR
Ga0137361_1049725923300012362Vadose Zone SoilMAVRSLLHYALEVPDQALGQRYYQDFGLVDESGRGPAVRLRPS
Ga0137373_1039556523300012532Vadose Zone SoilMPVRSLLHYALEVPDQAVGQRYYRDFGLADDSGRGPAVRLRPARQTRESVLLYEGPRKRLHHLC
Ga0137397_1018644033300012685Vadose Zone SoilMPVRSLLHYALEVPDQAVGQRYYRDFGLSDESGRGPAVRLRPARQSRESVLLYEGPRKRLHHLCFGAIGE
Ga0137397_1028196323300012685Vadose Zone SoilMPVRSLLHYALEVPDQTVGQRYYRDFGLADDSGRGAAVRLRAG
Ga0157299_1005957313300012899SoilMAVRSFLHYALEVPDQTVGQRYYEDFGLVDVTGGDKAVRLKPARQDREAV
Ga0157290_1006197813300012909SoilMAVRSFLHYALEVPDQAVGQRYYEDFGLVDVTGGDKAVRLKPARQDREAVLLYE
Ga0137407_1217614923300012930Vadose Zone SoilMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSEAVRLRPERLGRD
Ga0153915_1251891823300012931Freshwater WetlandsMAVRSFLHYALEVPDQTVGQKYYQDFGLVDASGSGEAVRLKPAR
Ga0164307_1051392623300012987SoilMAVRTFLHYALEVPDQTVGQRFYEDFGLMDRSGSSDAVRLRPDGHGRDAVLL
Ga0180063_101611513300014885SoilMAIRSFLHYALEVPDQAVGQRFYEDFGLVDGTGASDAV
Ga0180063_120367723300014885SoilMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSDAVRLRPERLARDT
Ga0173483_1011961813300015077SoilMAVRSFLHYALEVPDPTVGQRFYEDFGLVDGGASGDSVRLRPERLGRDAVLL
Ga0182007_1013163113300015262RhizosphereMAVRTFLHYALEVPDQTVGQRFYEDFGLMDGTGSSDAVR
Ga0132258_1123662413300015371Arabidopsis RhizosphereMPVRSLLHYALEVPDQAVGQRYYRDFGLADESGRGPAVRLRPARQARESV
Ga0132256_10049623813300015372Arabidopsis RhizosphereMAVRSFLHYALEVPDPTIGRRFYEDFGLVDGRGSGDSVRLRPDRL
Ga0132255_10197354423300015374Arabidopsis RhizosphereMAVRTFLHYALEVPDQTVGQRFYEDFGLMDGAGSRDAVRLRPEGHGRD
Ga0134083_1030331923300017659Grasslands SoilMPVRALLHYALEVPDQATGQTYYRDFGLEDASGHGDVVRLR
Ga0163161_1026362823300017792Switchgrass RhizosphereMPVRSLLHYALEVPDQAVGQRYYRDFGLADESGRGPAVRLRPARQARESVLLYEGPRKRLHHLCF
Ga0187780_1096336313300017973Tropical PeatlandMAVRSFLHYALEVPDQTVGQRFYEDFGLLDGTGASDAVR
Ga0184610_100285853300017997Groundwater SedimentMAIRSFLHYALEVPDQAVGQRFYEDFGLVDGTGASD
Ga0184608_1001965213300018028Groundwater SedimentMAVKALLHYALEVPDQSLGQRYYRDFGLAETAGGNVVRLRAPRQP
Ga0184612_1007341523300018078Groundwater SedimentMAVRSFLHYALEVPDQTVGQKYYQDFGLVDATGNGPAVRLKPARQTREAVMLYAGSRKRLHHLCYGATG
Ga0190265_1009547153300018422SoilMAVRSFLHYALEVPDQAVGQRFYEDFGLIDGTGSS
Ga0180116_109192613300019229Groundwater SedimentMPVRSLLHYALEVPDQAVGQRYYRDFGLADDSGRGPAVRLRPARQSRESVLLYEGSRKRLHHLCFGATGE
Ga0193725_101860413300019883SoilMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSGDAVRLRPERLGR
Ga0180108_115498523300020066Groundwater SedimentMAVKALLHYALEVPDQAVGQRYYRDFGLAETAGGNVV
Ga0184649_144808613300020068Groundwater SedimentMAVRSFLHYALEVPDQTVGQKYYQDFGLVDASGSGEAVRLKPARQTREAVLLYSGPRKRLHHLCYGAAGE
Ga0206354_1062441623300020081Corn, Switchgrass And Miscanthus RhizosphereMAVRTFLHYALEVPDQTVGQRFYEDFGLMDGTGSSDAVRLRPEGHGRDAVLLYGGPRKHL
Ga0210378_1004309233300021073Groundwater SedimentMAIRSFLHYALEVPDQAVGQRFYEDFGLVDGTGASDAVRLRPERL
Ga0210379_1000744653300021081Groundwater SedimentMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSDAVRLRPERLGRDTVLLYGGPRK
Ga0209399_1043589213300025157Thermal SpringsMAVRALLHYALEVPDQAVGQRFYEDFGLVDGTGSSDAVRLRPERLGRDAVLLYGG
Ga0209521_1008314813300025164SoilMAVRSFLHYALEVPDQTVGQKYYQDFGLVDATGNGQAVRLKPARQAREAVLLYPGPRKRL
Ga0209002_1074644013300025289SoilMVRSLLHYALEVPDQTVGQRFYQDFGLLDTTGRDDAVRLRPGPLDRVQVLLYGG
Ga0210131_106578023300025551Natural And Restored WetlandsMPVRSLLHYALEVPDQTIGQRYYRDFGLSDDSARGPVVRLRPARQSR
Ga0207682_1026956313300025893Miscanthus RhizosphereMAVRTFLHYALEVPDQTVGQRFYEDFGLMDGTGSSDAVRLRPEGHGRDAVLL
Ga0207684_1039061323300025910Corn, Switchgrass And Miscanthus RhizosphereMPVRSLLHYALEVPDQSVGQRYYRDFGLADESGRGAAVRLRAGRQPRESVLLYEGPRKRL
Ga0207681_1118249913300025923Switchgrass RhizosphereMAVRSFLHYALEVPDQTVGQRFYEDFGLVDGTGASDAVRLRPERLGRDIVLLYGG
Ga0207659_1131373623300025926Miscanthus RhizosphereMAVRTFLHYALEVPDQTVGQRFYEDFGLMDGTGSSDAVRLRPEGHGRDAVLLY
Ga0207686_1069578813300025934Miscanthus RhizosphereMPVRSLLHYALEVPDQAVGQRYYRDFGLADESGRGP
Ga0207709_1009881933300025935Miscanthus RhizosphereMAVRTFLHYALEVPDQTVGQRFYEDFGLMDGTGSSDAV
Ga0207704_1064701713300025938Miscanthus RhizosphereMAVRTFLHYALEVPDQTVGQRFYEDFGLMDGTGSSDAVRLRPEGHGRD
Ga0207704_1146564223300025938Miscanthus RhizosphereMAVRSFLHYALEVPDQTVGQRFYEDFGLVDGTGASDAVRLRPERLGRDIVLLYGGPRKRL
Ga0207651_1051891013300025960Switchgrass RhizosphereMAVRTFLHYALVVPDQTVGQRFYEDFGLMDGTGSSDAVRLRPEGHGR
Ga0208532_100167423300026011Rice Paddy SoilMAVRTFLHYALEVPDQAVGRRFYEDFGLVDGTGPSEAVRLR
Ga0207641_1063223113300026088Switchgrass RhizosphereMAVHSFLHYALTVPDLSVGQNFYTDFGFTDMTGQSNTV
Ga0207641_1104005523300026088Switchgrass RhizosphereMPVRSLLHYALEVPDQAVGQRYYRDFGLADESGRGPAVR
Ga0207641_1153166413300026088Switchgrass RhizosphereMAVRTFLHYALEVPDQTVGQRFYEDFGLMDGAGSRDAV
Ga0209471_125808623300026318SoilMAVRSLLHYALEVPDQSLGQRYYQDFGLVDESGRSAAVRLR
Ga0209158_125245413300026333SoilMAVRSLLHYALEVPDQSLGQRYYQDFGLVDESGRGAAVRLRPAR
Ga0257180_107024123300026354SoilMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSNAVRLRPERLGRDTVLLY
Ga0257166_101589313300026358SoilMPVRSLLHYALEVPDQSVGQRYYRDFGLADESGRGAAVRLRAGRQSRESVLLYEGPRK
Ga0257176_100030213300026361SoilMAVRTFLHYALEVPDLTVGQRFYEDFGLVDGTGRSDAVRLRPERLGRDTV
Ga0257176_102181713300026361SoilMAVRSLLHYALEVPDQALGQRYYQDFGLVDESGRGAVVRLRPARQSRE
Ga0257179_100043313300026371SoilMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSN
Ga0257167_102575113300026376SoilMAVRSLLHYALEVPDQALGQRYYQDFGLVDESGRGAVVRL
Ga0257178_103658713300026446SoilMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSNAVRL
Ga0257178_104227623300026446SoilMAVRSLLHYALEVPDQALGQRYYQDFGLVDESGRGAAVRLRPA
Ga0256821_103046623300026452SedimentMAVRSFLHYALEVPDQALGQKYYQDFGLVDAGGSGQ
Ga0257153_103827823300026490SoilMAVRTFLHYALEIPDQTVGQRFYEDFGLVDGTGRSDAVRLRPDRLGRDAV
Ga0209869_100756313300027187Groundwater SandMAVRSFLHYALEVPDQTVGQRFYEDFGLVDGTERGDAVRL
Ga0209981_102560913300027378Arabidopsis Thaliana RhizosphereMAVRSFLHYALEVPDPSVGQRFYEDFGLVDGGASGDSVRLRPERLGRDAVLLY
Ga0209213_110644813300027383Forest SoilMAIRSFLHYALEVPDPAVGQRFYEDFGLVDGTGSS
Ga0208995_102305713300027388Forest SoilMAIRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSEAVRLRPERLGRDTV
Ga0209684_101633013300027527Tropical Forest SoilMAVRSLLHYALEVPDQTVGQRYYRDFGLADDSRGGAAVRLRPAHQGRESVLL
Ga0208990_113901413300027663Forest SoilMAIRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSEAVRLRPERLGRDTVL
Ga0209011_108213623300027678Forest SoilMAVRSFLHYALEVPDQTIGQKYYQDFGLVDATGNGNAVRLKPARQAREAVMLYAGPRKRLHHL
Ga0209966_104325613300027695Arabidopsis Thaliana RhizosphereMAVKSLLHYALEVPDQAVGQRYYRDFGLADATGSGNAV
Ga0208989_1009151413300027738Forest SoilMAIRSFLHYALEVPDQAVGQRFYEDFGLVDSTGSSEAVRLRPERL
Ga0209177_1005714913300027775Agricultural SoilMAVRTFLHYALEVPDQTVGQRFYEDFGLVDGTGSSDAVRLRPKRLGR
(restricted) Ga0233416_1028494413300027799SedimentMAVRVFLHYALEVPDQTVGQKYYQDFGLVDATGSGGAVRLKPARL
Ga0209726_1011003613300027815GroundwaterMAIRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSDAVRL
Ga0209701_1015021123300027862Vadose Zone SoilMAVRSLLHYALEVPDQALGQRYYQDFGLVDESGRGAAARLRPARQSRESVQLYEGPRKRL
Ga0209974_1003576513300027876Arabidopsis Thaliana RhizosphereMAVRTFLHYALEVPDQTVGQRFYEDFGLMDGTGSSDAVRLRPEG
(restricted) Ga0233418_1039498123300027995SedimentMAVRSFLHYALEVPDQAEGQRFYQDFGLVDGTGSSNAVRL
Ga0268265_1049813723300028380Switchgrass RhizosphereMAVKALLHYALEVPDQSVGQRYYRDFGLAETAGGNVVRLRAPR
Ga0307504_1011910923300028792SoilMAVRSFLHYALEVPDQTVGQRFYEDFGLVDGTGSGDAVRLRPERLGRDTVLLYGGPRK
Ga0307312_1050587523300028828SoilMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSDAVRLRPERLGRD
Ga0307312_1065558823300028828SoilMAIRSFLHYALEVPDQAVGQRFYEDFGLVDGTGASDAVRLRPERLGRDTVLLYGGARKRL
Ga0302046_1108307823300030620SoilMAVRSFLHYALDVPDQAVGQRFYEDFGLVDGTGASDAVRLRPERLGRDTV
(restricted) Ga0255311_100281933300031150Sandy SoilMAVRSFLHYALEVPDQAVGQRFYEDFGLVDSTGLSDAVRLRP
Ga0318516_1001148013300031543SoilMAVRSLLHYALEVPDQAVGQRYYRDFGLADDSRGGAAVR
Ga0318573_1001507463300031564SoilMAVRSLLHYALEVPDQAVGQRYYRDFGLADDSRGGAAVRLRPARQ
Ga0318572_1050620913300031681SoilMAVRSLLHYALEVPDQAVGQRYYRDFGLADDSRGGAAVRLRPARQSRESVLLYEGA
Ga0318496_1023796013300031713SoilMAVRSLLHYALEVPDQAVGQRYYRDFGLADDSRGGAAVRLRPARQSRESVLLYE
Ga0307469_1002536253300031720Hardwood Forest SoilMAVRSFLHYALEVPDQTVGQRFYEDFGLVDGSGSSDAVRLRPEGLDRAAVLLYGG
Ga0307469_1015224413300031720Hardwood Forest SoilMAVRTFLHYALEIPDQTVGQRFYEDFGLVDGTGSSDAVRLRPDRLGRDAVLLYGG
Ga0307469_1093451313300031720Hardwood Forest SoilMPVRSLLHYALEVPDQSIGQRYYRDFGLADESGRGA
Ga0306918_1033235513300031744SoilMAVRSLLHYALEVPDQAVGQRYYRDFGLADDSRGGAAVRLRP
Ga0318526_1042555613300031769SoilMAVRSLLHYALEVPDQAVGQRYYRDFGLADDSRGGAAVRLRPARQSRESVLLY
Ga0318565_1043863423300031799SoilMAVRSLLHYALEVPDQAVGQRYYRDFGLADDSRGGAAVRLRPARQSRESVLLYEG
Ga0318512_1001798813300031846SoilMAVRSLLHYALEVPDQAVGQRYYRDFGLADDSRGGAAVRLR
Ga0318495_1044580213300031860SoilMAVRSLLHYALEVPDQAVGQRYYRDFGLADDSRGGA
Ga0318520_1055790023300031897SoilMAVRSLLHYALEVPDQAVGQRYYRDFGLADDSRGGAAVRLRPARQSRESV
Ga0310916_1157281113300031942SoilMAVRSLLHYALEVPDQAVGQRYYRDFGLADDSRGGAAVRLRPARQSRES
Ga0214473_1034549513300031949SoilMAVRSFLHYALEVPDQTVGQKYYQDFGLVDATGNGQAVRLKPARQAREAVLLYPGPRKRLHHLCYGAPGEDFAQTKAA
Ga0318577_1012335913300032091SoilMAVRSLLHYALEVPDQAVGQRYYRDFGLADDSRGGAAVRLRPARQSRE
Ga0307470_1050895613300032174Hardwood Forest SoilMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSNAVRLRPERLARDTVLLSGGAR
Ga0307470_1172355013300032174Hardwood Forest SoilMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSDAVRL
Ga0315276_1041039713300032177SedimentMAVRSFLHYALEVPDQTVGQTYYQDFGLVDATGSGPAVRLKPARQSREAVLLYAGPRKRL
Ga0307471_10328785713300032180Hardwood Forest SoilMAVRSFLHYALEVPDQAIGQRFYEDFGLVDGTGSSDAVRLRPERLGRDTVLLYGGPRKR
Ga0307471_10406992223300032180Hardwood Forest SoilMAVRSFLHYALEVPDPSVGQRFYEDFGLVNGRGSGDSVRLRPE
Ga0307472_10033292713300032205Hardwood Forest SoilMPVRSLLHYALEVPDQAVGQRYYRDFGLADESGRGPAVRLRPARQARESVLLYEG
Ga0315273_1169487223300032516SedimentMAVRSFLHYALEVPDQTVGQKYYQDFGLVDATGSGPAVRLKPSRQTR
Ga0335084_1037053123300033004SoilMAVRSFLHYALEVPDQAVGQRFFEDFGLVNGTGSSDAVRLRPERLARDAVLLYGGARKRLHHLCYGAPGED
Ga0326726_1172368323300033433Peat SoilMAVRSFLHYALEVPDQTVGQKYYQDFGLVDASGSGEAVRLKPARQTREAVLLYPGPRKRLHHLCYGATGE
Ga0316624_1072310823300033486SoilMAVRTFLHYALEVPDQTVGQRFYEDFGLVDGTGGSDAVHLRPERLGRDAVLLYGGP
Ga0247829_1133752823300033550SoilMAVRSFLHYALEVPDQTVGQRFYEDFGLVDGTGASDAVRLRPERLGRDTVLLY
Ga0364928_0135977_471_5963300033813SedimentMAIRSFLHYALEVPDQAVGQRFYEDFGLVDGTGASDAVRLRP
Ga0364942_0091932_1_1593300034165SedimentMAVRSFLHYALEVPDQAVGQRFYEDFGLVDGTGSSDAVRLRPERLDRESVLLY
Ga0370545_085351_2_1183300034643SoilMPVKSFLHYALEVPDQTVGQKYYQDFGLVDATGGNDAVR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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