NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F031559

Metagenome / Metatranscriptome Family F031559

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F031559
Family Type Metagenome / Metatranscriptome
Number of Sequences 182
Average Sequence Length 56 residues
Representative Sequence MSDSFINRTSRVAIAGRVAERLRPQGWNELTLRGDYHTPFGKSEARAEAAKWLCVV
Number of Associated Samples 119
Number of Associated Scaffolds 182

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 79.67 %
% of genes near scaffold ends (potentially truncated) 23.63 %
% of genes from short scaffolds (< 2000 bps) 84.07 %
Associated GOLD sequencing projects 110
AlphaFold2 3D model prediction Yes
3D model pTM-score0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (59.341 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(18.681 % of family members)
Environment Ontology (ENVO) Unclassified
(31.868 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(41.758 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 39.29%    β-sheet: 0.00%    Coil/Unstructured: 60.71%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.29
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 182 Family Scaffolds
PF04773FecR 2.75
PF13467RHH_4 2.75
PF04392ABC_sub_bind 2.20
PF03401TctC 1.10
PF00839Cys_rich_FGFR 1.10
PF13430DUF4112 1.10
PF00313CSD 1.10
PF04909Amidohydro_2 1.10
PF00574CLP_protease 1.10
PF04014MazE_antitoxin 1.10
PF13458Peripla_BP_6 0.55
PF13783DUF4177 0.55
PF01364Peptidase_C25 0.55
PF04226Transgly_assoc 0.55
PF07080DUF1348 0.55
PF00589Phage_integrase 0.55
PF09361Phasin_2 0.55
PF06823DUF1236 0.55
PF11604CusF_Ec 0.55
PF00690Cation_ATPase_N 0.55
PF03330DPBB_1 0.55
PF13185GAF_2 0.55
PF03734YkuD 0.55
PF00561Abhydrolase_1 0.55

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 182 Family Scaffolds
COG0616Periplasmic serine protease, ClpP classPosttranslational modification, protein turnover, chaperones [O] 2.20
COG0740ATP-dependent protease ClpP, protease subunitPosttranslational modification, protein turnover, chaperones [O] 2.20
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 2.20
COG1030Membrane-bound serine protease NfeD, ClpP classPosttranslational modification, protein turnover, chaperones [O] 1.10
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 1.10
COG0474Magnesium-transporting ATPase (P-type)Inorganic ion transport and metabolism [P] 0.55
COG1376Lipoprotein-anchoring transpeptidase ErfK/SrfKCell wall/membrane/envelope biogenesis [M] 0.55
COG2261Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein familyGeneral function prediction only [R] 0.55
COG3034Murein L,D-transpeptidase YafKCell wall/membrane/envelope biogenesis [M] 0.55
COG3558Uncharacterized conserved protein, nuclear transport factor 2 (NTF2) superfamilyFunction unknown [S] 0.55


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A59.34 %
All OrganismsrootAll Organisms40.66 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2040502001|FACENC_GAMC6GA01AVRGHNot Available518Open in IMG/M
2088090015|GPICI_8731729Not Available1885Open in IMG/M
2189573002|GZIGXIF01BVASCNot Available537Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101634747Not Available1136Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101636551Not Available819Open in IMG/M
3300000559|F14TC_103005859Not Available799Open in IMG/M
3300000580|AF_2010_repII_A01DRAFT_1000777Not Available4909Open in IMG/M
3300000580|AF_2010_repII_A01DRAFT_1043011Not Available698Open in IMG/M
3300000597|AF_2010_repII_A1DRAFT_10037007Not Available1302Open in IMG/M
3300000754|JGI11851J11668_1002732All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium722Open in IMG/M
3300000793|AF_2010_repII_A001DRAFT_10006760Not Available2697Open in IMG/M
3300000816|AF_2010_repII_A10DRAFT_1008659All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1064Open in IMG/M
3300000816|AF_2010_repII_A10DRAFT_1018939Not Available726Open in IMG/M
3300001431|F14TB_101740155Not Available1276Open in IMG/M
3300003911|JGI25405J52794_10110302Not Available617Open in IMG/M
3300003998|Ga0055472_10050023Not Available1052Open in IMG/M
3300004024|Ga0055436_10146019Not Available719Open in IMG/M
3300004025|Ga0055433_10070867All Organisms → cellular organisms → Bacteria746Open in IMG/M
3300004463|Ga0063356_100618853All Organisms → cellular organisms → Bacteria1468Open in IMG/M
3300004479|Ga0062595_100373343All Organisms → cellular organisms → Bacteria → Proteobacteria1006Open in IMG/M
3300004479|Ga0062595_100855070Not Available759Open in IMG/M
3300004479|Ga0062595_101338120Not Available648Open in IMG/M
3300005289|Ga0065704_10413143All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860739Open in IMG/M
3300005294|Ga0065705_10173256Not Available1653Open in IMG/M
3300005332|Ga0066388_100073560All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3740Open in IMG/M
3300005332|Ga0066388_100246729Not Available2423Open in IMG/M
3300005332|Ga0066388_100368646All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2083Open in IMG/M
3300005332|Ga0066388_100373585All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2072Open in IMG/M
3300005332|Ga0066388_100471078All Organisms → cellular organisms → Bacteria1895Open in IMG/M
3300005332|Ga0066388_101160465All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phreatobacteraceae → Phreatobacter → Phreatobacter cathodiphilus1315Open in IMG/M
3300005332|Ga0066388_101650001Not Available1131Open in IMG/M
3300005332|Ga0066388_102076735All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1021Open in IMG/M
3300005332|Ga0066388_102132736Not Available1009Open in IMG/M
3300005332|Ga0066388_102803702Not Available890Open in IMG/M
3300005332|Ga0066388_103267108Not Available828Open in IMG/M
3300005332|Ga0066388_108460093Not Available512Open in IMG/M
3300005354|Ga0070675_100740058All Organisms → cellular organisms → Bacteria897Open in IMG/M
3300005439|Ga0070711_100598234All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium920Open in IMG/M
3300005713|Ga0066905_100148028Not Available1686Open in IMG/M
3300005713|Ga0066905_100346998All Organisms → cellular organisms → Bacteria1184Open in IMG/M
3300005713|Ga0066905_100412318All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD00691099Open in IMG/M
3300005713|Ga0066905_100450919Not Available1057Open in IMG/M
3300005713|Ga0066905_100532780Not Available982Open in IMG/M
3300005713|Ga0066905_100629971Not Available912Open in IMG/M
3300005713|Ga0066905_100714144All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis861Open in IMG/M
3300005764|Ga0066903_103222195Not Available882Open in IMG/M
3300005764|Ga0066903_105216845All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria687Open in IMG/M
3300005764|Ga0066903_108126242Not Available537Open in IMG/M
3300005764|Ga0066903_108231625Not Available533Open in IMG/M
3300005937|Ga0081455_10002933All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales19997Open in IMG/M
3300005937|Ga0081455_10023558All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae5727Open in IMG/M
3300005937|Ga0081455_10023991All Organisms → cellular organisms → Bacteria5661Open in IMG/M
3300005937|Ga0081455_10249795Not Available1298Open in IMG/M
3300005937|Ga0081455_10646313Not Available682Open in IMG/M
3300005983|Ga0081540_1321696Not Available530Open in IMG/M
3300006049|Ga0075417_10000762All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria7907Open in IMG/M
3300006049|Ga0075417_10001786All Organisms → cellular organisms → Bacteria → Proteobacteria6151Open in IMG/M
3300006049|Ga0075417_10148754Not Available1088Open in IMG/M
3300006050|Ga0075028_100682387All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria617Open in IMG/M
3300006058|Ga0075432_10020212Not Available2277Open in IMG/M
3300006194|Ga0075427_10004911All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1892Open in IMG/M
3300006196|Ga0075422_10098350All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1121Open in IMG/M
3300006844|Ga0075428_100054049All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis4400Open in IMG/M
3300006844|Ga0075428_101561824All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria690Open in IMG/M
3300006846|Ga0075430_100081682All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis2708Open in IMG/M
3300006846|Ga0075430_100430918All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1088Open in IMG/M
3300006847|Ga0075431_100687351All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1001Open in IMG/M
3300006852|Ga0075433_10156366All Organisms → cellular organisms → Bacteria → Proteobacteria2028Open in IMG/M
3300006852|Ga0075433_10915842Not Available764Open in IMG/M
3300006852|Ga0075433_11313277Not Available627Open in IMG/M
3300006854|Ga0075425_100203719Not Available2274Open in IMG/M
3300006854|Ga0075425_100523100Not Available1366Open in IMG/M
3300006854|Ga0075425_100689244Not Available1173Open in IMG/M
3300006871|Ga0075434_100745229Not Available997Open in IMG/M
3300006904|Ga0075424_102493592Not Available542Open in IMG/M
3300006914|Ga0075436_100093445All Organisms → cellular organisms → Bacteria2091Open in IMG/M
3300006969|Ga0075419_10239267Not Available1211Open in IMG/M
3300007076|Ga0075435_100216224Not Available1627Open in IMG/M
3300007076|Ga0075435_101301237Not Available637Open in IMG/M
3300009100|Ga0075418_11562757Not Available716Open in IMG/M
3300009100|Ga0075418_12640034Not Available548Open in IMG/M
3300009147|Ga0114129_12650883Not Available598Open in IMG/M
3300009156|Ga0111538_10700899Not Available1283Open in IMG/M
3300009162|Ga0075423_10794441Not Available1001Open in IMG/M
3300009162|Ga0075423_12864245Not Available528Open in IMG/M
3300009168|Ga0105104_10544684Not Available656Open in IMG/M
3300009792|Ga0126374_10203814Not Available1254Open in IMG/M
3300010043|Ga0126380_10070615Not Available1980Open in IMG/M
3300010043|Ga0126380_10611604Not Available860Open in IMG/M
3300010043|Ga0126380_11875094Not Available544Open in IMG/M
3300010047|Ga0126382_10423425All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1046Open in IMG/M
3300010047|Ga0126382_10816327Not Available797Open in IMG/M
3300010047|Ga0126382_11527244Not Available615Open in IMG/M
3300010358|Ga0126370_10042508All Organisms → cellular organisms → Bacteria → Proteobacteria2834Open in IMG/M
3300010359|Ga0126376_10060185All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2730Open in IMG/M
3300010359|Ga0126376_11021579Not Available829Open in IMG/M
3300010360|Ga0126372_12733139Not Available545Open in IMG/M
3300010362|Ga0126377_11997698Not Available656Open in IMG/M
3300010366|Ga0126379_13269777Not Available543Open in IMG/M
3300010375|Ga0105239_11849938Not Available700Open in IMG/M
3300010376|Ga0126381_101694360Not Available913Open in IMG/M
3300010376|Ga0126381_102191750Not Available795Open in IMG/M
3300010403|Ga0134123_13311052Not Available520Open in IMG/M
3300010868|Ga0124844_1297751Not Available546Open in IMG/M
3300012937|Ga0162653_100004668All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC68601425Open in IMG/M
3300012948|Ga0126375_10291249Not Available1128Open in IMG/M
3300012948|Ga0126375_11375717Not Available597Open in IMG/M
3300012948|Ga0126375_11427382Not Available588Open in IMG/M
3300012955|Ga0164298_10016124All Organisms → cellular organisms → Bacteria3070Open in IMG/M
3300012957|Ga0164303_11269137Not Available543Open in IMG/M
3300012961|Ga0164302_10194831All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1240Open in IMG/M
3300012971|Ga0126369_10953500Not Available945Open in IMG/M
3300012971|Ga0126369_12633646Not Available587Open in IMG/M
3300012986|Ga0164304_10137013All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1522Open in IMG/M
3300012989|Ga0164305_11400199Not Available616Open in IMG/M
3300013306|Ga0163162_12589168Not Available584Open in IMG/M
3300013308|Ga0157375_12644717Not Available600Open in IMG/M
3300015371|Ga0132258_10846765Not Available2307Open in IMG/M
3300015371|Ga0132258_10949118Not Available2173Open in IMG/M
3300015371|Ga0132258_12045794All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1440Open in IMG/M
3300015372|Ga0132256_103266603Not Available545Open in IMG/M
3300015373|Ga0132257_100572485All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1393Open in IMG/M
3300016387|Ga0182040_10000146All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales30213Open in IMG/M
3300018064|Ga0187773_10210251Not Available1041Open in IMG/M
3300018067|Ga0184611_1094707Not Available1034Open in IMG/M
3300018072|Ga0184635_10187507Not Available825Open in IMG/M
3300018072|Ga0184635_10284918All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860651Open in IMG/M
3300018081|Ga0184625_10069839All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC68601784Open in IMG/M
3300018081|Ga0184625_10147173All Organisms → cellular organisms → Bacteria → Proteobacteria1230Open in IMG/M
3300018081|Ga0184625_10382933All Organisms → cellular organisms → Bacteria728Open in IMG/M
3300019269|Ga0184644_1084138All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860729Open in IMG/M
3300019869|Ga0193705_1086185All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860597Open in IMG/M
3300019877|Ga0193722_1073493Not Available846Open in IMG/M
3300021078|Ga0210381_10129471All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria843Open in IMG/M
3300021344|Ga0193719_10058356Not Available1674Open in IMG/M
3300021344|Ga0193719_10193601All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria870Open in IMG/M
3300021560|Ga0126371_10028617All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root14625195Open in IMG/M
3300021560|Ga0126371_10840477Not Available1063Open in IMG/M
3300021560|Ga0126371_11345067Not Available847Open in IMG/M
3300021951|Ga0222624_1349276All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860638Open in IMG/M
3300021951|Ga0222624_1351465All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria527Open in IMG/M
3300022195|Ga0222625_1485701All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860649Open in IMG/M
3300022694|Ga0222623_10338587Not Available575Open in IMG/M
3300022756|Ga0222622_10086983All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1885Open in IMG/M
3300025916|Ga0207663_10526859All Organisms → cellular organisms → Bacteria921Open in IMG/M
3300025961|Ga0207712_11146384Not Available693Open in IMG/M
3300027873|Ga0209814_10003160All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales6110Open in IMG/M
3300027873|Ga0209814_10069344Not Available1481Open in IMG/M
3300027880|Ga0209481_10359030Not Available744Open in IMG/M
3300027907|Ga0207428_10055701Not Available3143Open in IMG/M
3300027909|Ga0209382_12080395All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria541Open in IMG/M
3300028708|Ga0307295_10071568All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria913Open in IMG/M
3300028784|Ga0307282_10383547Not Available680Open in IMG/M
3300028814|Ga0307302_10167902Not Available1066Open in IMG/M
3300028828|Ga0307312_10251401Not Available1144Open in IMG/M
3300030969|Ga0075394_11964787All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria636Open in IMG/M
3300030993|Ga0308190_1200267All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860502Open in IMG/M
3300031096|Ga0308193_1069672All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium560Open in IMG/M
3300031170|Ga0307498_10002258Not Available3026Open in IMG/M
3300031170|Ga0307498_10155397All Organisms → cellular organisms → Bacteria → Proteobacteria763Open in IMG/M
3300031170|Ga0307498_10283009Not Available614Open in IMG/M
(restricted) 3300031197|Ga0255310_10085870Not Available838Open in IMG/M
3300031199|Ga0307495_10190632Not Available557Open in IMG/M
3300031226|Ga0307497_10478723Not Available610Open in IMG/M
3300031231|Ga0170824_109517190Not Available1026Open in IMG/M
3300031446|Ga0170820_10842217Not Available532Open in IMG/M
3300031469|Ga0170819_14831011All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860514Open in IMG/M
3300031545|Ga0318541_10000149All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales19649Open in IMG/M
3300031547|Ga0310887_11127565All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium504Open in IMG/M
3300031679|Ga0318561_10049835Not Available2092Open in IMG/M
3300031720|Ga0307469_11350659All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860678Open in IMG/M
3300031720|Ga0307469_11589835All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria628Open in IMG/M
3300031724|Ga0318500_10122156Not Available1205Open in IMG/M
3300031740|Ga0307468_100985574All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860740Open in IMG/M
3300031859|Ga0318527_10341344Not Available638Open in IMG/M
3300032180|Ga0307471_100666427All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1204Open in IMG/M
3300033433|Ga0326726_10324870Not Available1448Open in IMG/M
3300033433|Ga0326726_11937366Not Available574Open in IMG/M
3300034090|Ga0326723_0461214Not Available581Open in IMG/M
3300034643|Ga0370545_096533All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860637Open in IMG/M
3300034680|Ga0370541_021149All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria734Open in IMG/M
3300034681|Ga0370546_031901All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860753Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere18.68%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil13.19%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil12.64%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil12.64%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil4.95%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere3.85%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment3.30%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment2.75%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.75%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.20%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.20%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.65%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.65%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.65%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.10%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.10%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.55%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.55%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.55%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.55%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.55%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.55%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.55%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.55%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.55%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.55%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.55%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere0.55%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.55%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.55%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.55%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.55%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.55%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.55%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.55%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2040502001Soil microbial communities from sample at FACE Site 2 North Carolina CO2+EnvironmentalOpen in IMG/M
2088090015Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
2189573002Grass soil microbial communities from Rothamsted Park, UK - FE1 (NaCl 30g/L 5ml)EnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000559Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemlyEnvironmentalOpen in IMG/M
3300000580Forest soil microbial communities from Amazon forest - 2010 replicate II A01EnvironmentalOpen in IMG/M
3300000597Forest soil microbial communities from Amazon forest - 2010 replicate II A1EnvironmentalOpen in IMG/M
3300000754Amended soil microbial communities from Kansas Great Prairies, USA - acetate Total DNA F2.4TBEnvironmentalOpen in IMG/M
3300000793Forest soil microbial communities from Amazon forest - 2010 replicate II A001EnvironmentalOpen in IMG/M
3300000816Forest soil microbial communities from Amazon forest - 2010 replicate II A10EnvironmentalOpen in IMG/M
3300001431Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemlyEnvironmentalOpen in IMG/M
3300003911Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300003998Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2EnvironmentalOpen in IMG/M
3300004024Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004025Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005289Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300005983Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1Host-AssociatedOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006194Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1Host-AssociatedOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300010868Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)EnvironmentalOpen in IMG/M
3300012937Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300018064Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018067Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coexEnvironmentalOpen in IMG/M
3300018072Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2EnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300019269Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019869Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2EnvironmentalOpen in IMG/M
3300019877Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1EnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300021344Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300021951Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022195Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022694Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coexEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027880Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028708Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300030969Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030993Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031096Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031170Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_SEnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031199Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_SEnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031469Fir Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031859Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300034090Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00NEnvironmentalOpen in IMG/M
3300034643Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034680Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034681Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
FACENCE_52852602040502001SoilMSNTFVNWTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARTEAAKWLCQI
GPICI_029265802088090015SoilMSITFINRTSRVTIAGRVAASRRPHEWNELTMLGDYHLPFGKTEARAEAAKWLCRV
FE1_065590502189573002Grass SoilMSVTFINWTSRVAIAGRVAERRRPQGWNELTLRGDYHAPFGKAEARAEAEKWIWQI
INPhiseqgaiiFebDRAFT_10163474743300000364SoilMSDSFINRTSRVAIAGRVAERLRPQGWDDLSLRGDYHPPFGKTEARIEAAKWLCLV*
INPhiseqgaiiFebDRAFT_10163655133300000364SoilMSDSFINWTSRVAIAGRIGERLRLRGWNELTLCGDYHAPFGKSEARAEAAKWLCLV*
F14TC_10300585923300000559SoilMSNSFINWSSRVAIAGRIGKRLRPQGWNKFTLRGDYHLPFGKSEARAEAAKWLCQV*
AF_2010_repII_A01DRAFT_100077753300000580Forest SoilMSDSFINQTSRVAIAARVAEHHRPQYWTEFTLRGDYHSPFGKIEARAEAAKWLCLV*
AF_2010_repII_A01DRAFT_104301123300000580Forest SoilMSDSFINQTSRVAIAGRVAERHRPQYWNELTFRGDYHPPFGKIEARAEAAKWLCLI*
AF_2010_repII_A1DRAFT_1003700713300000597Forest SoilMSDSFINQTSRVAIAGRVXEHHRPWNELTLRGDYHPPFGKIEARAEAAKWLCLV*
JGI11851J11668_100273223300000754SoilMSITFINRTSRVAIAGRVAEWRRPHEWNEXTMLGDYHLPFGKAEARAEAAKWLCQV*
AF_2010_repII_A001DRAFT_1000676043300000793Forest SoilMSDSFINQTSRVAIAGRVAEHHRPWNELTLRGDYHPPFGKIEARAEAAKWLCLV*
AF_2010_repII_A10DRAFT_100865923300000816Forest SoilMSDSFINQTSRVAIAGRFAEHHRPQYWTELTLRGDYHPPFGKIEARAEAAKWLCLV*
AF_2010_repII_A10DRAFT_101893913300000816Forest SoilMSDSFINQTSRVAIAGRVAERHRPQYWNELTFRGDYHPPFGKIEARAEAAKWL
F14TB_10174015513300001431SoilNWTSRVAIAGRIGERLRLRGWNELTLCGDYHAPFGKSEARAEAAKWLCLV*
JGI25405J52794_1011030223300003911Tabebuia Heterophylla RhizosphereMSDNFINWSSRVAIAGRIGERLRPQGWNEFTLRGDYHLPFGKSEARAEAAKWLCQV*
Ga0055472_1005002323300003998Natural And Restored WetlandsMSDTSTNLTSRVAIAGRVAELRRQSQGWSETITLGDYHQPFGKMEARAEAAKWLWQP*
Ga0055436_1014601913300004024Natural And Restored WetlandsMLDNFTNWTSRVAIAGRVAERRRQPQDWNETMTLGDYHLPFGKVTAPAEAARWLCQP*
Ga0055433_1007086723300004025Natural And Restored WetlandsPMSDTFINRTSRVAIAGRIAEERRPQDWNELSTPGDYHPPFGESEAKAEAAKWLCQV*
Ga0063356_10061885323300004463Arabidopsis Thaliana RhizosphereMSDIFVNWTSRVAIAGRIAERRRPQDWNELTTPGDYHAPFGKIEAKVEAAKWLCQV*
Ga0062595_10037334323300004479SoilNTFMNLTSRVAIAGRRPRSWNESMILGDYHLPFGKVEARAEAAKWIWQI*
Ga0062595_10085507013300004479SoilMSDSFINQTSRVAIAGRVAEHHRPQYWTELTLRGDYHAPFGKIEARAEAAKWLCLV*
Ga0062595_10133812023300004479SoilMSITFINRTSRVAIAGRVAESRRPHEWNELAMLGDYHLPFGKTEARAEAAKWLCQV*
Ga0065704_1041314323300005289Switchgrass RhizosphereMSITFINRTSRVAIAGRVAEWRRPHEWNELTMLGDYHLPFGKAEARAEAAKWLCQV*
Ga0065705_1017325633300005294Switchgrass RhizosphereMIGGTMSITFINRTSRVAIAGRVAEWRRPHEWNELTMLGDYHLPFGKAEARAEAAKWLCQV*
Ga0066388_10007356023300005332Tropical Forest SoilMSDIFINWSSRVAISGRIGERLRPQGWNEFTLRGDYHAPFGKSEARVEAAKWLCQV*
Ga0066388_10024672943300005332Tropical Forest SoilMSDSFINQTSRVAISARVAEHHRPENWTELTTRGDYHLPFGKTEARTEAAKWLCQI*
Ga0066388_10036864623300005332Tropical Forest SoilMSDSFINQTSRVAIAGRVAEHQRPQYWTELTLRGDYHPPFGKIEARAEAAKWLCLV*
Ga0066388_10037358523300005332Tropical Forest SoilMSDSFINQTSRVAIAGRVAERHRPQYWNELTFQGDYHPPFGKIEARAEAAKWLCLI*
Ga0066388_10047107833300005332Tropical Forest SoilMSDSFINWTSRVAIAGRVGGQRHESWNELTLRGDYHAPFGKSQARAEAAKWLCQV*
Ga0066388_10116046523300005332Tropical Forest SoilMSDSFINWTSRVAIAGRVGERLRQESWNELTLRGDYHAPFGKSQARAEAAKWLWQV*
Ga0066388_10165000113300005332Tropical Forest SoilMSDSFINQTSRVAIAGRVSEHHRPWNELTLRGDYHPPFGKIEARAEAAKWLCLV*
Ga0066388_10207673523300005332Tropical Forest SoilMSGSFINHTSRVAIAGRVAEHQRPLCWSDLTLRGDYHPPFGKIEARLEAAKWLCLI*
Ga0066388_10213273623300005332Tropical Forest SoilMEVPMSDSFINWSSRVAIAGRIGERLRPQGWNEFIRGDYHRPFGKSEARAEAAKWLCQV*
Ga0066388_10280370213300005332Tropical Forest SoilMSDVFINWASRVAIAGRIGERLRPQGNDFTLRGDYHRPFGKSEARAEAVKWLC
Ga0066388_10326710833300005332Tropical Forest SoilMSDVFINWASRVAIAGRIGERLRPQGNDFTLRGDYHRPFGKSEARAE
Ga0066388_10846009313300005332Tropical Forest SoilMSDSFINQTSRVAIAARVAEHHRPQYWTELTLRGDYHSPFGKIEARAEAAKWLCL
Ga0070675_10074005833300005354Miscanthus RhizosphereMSGSFINHTSRVAIAGRVAEHHRPPCWNDLTLRGDYHPPFGKIEARLEAAKWLCLV*
Ga0070711_10059823413300005439Corn, Switchgrass And Miscanthus RhizosphereMSITFINRTSRVAIAGRLAEWRRQPQNWNELNMLGDYHLPFGKAEARAEAAKWLCQV*
Ga0066905_10014802823300005713Tropical Forest SoilMSDSFINQTSRVAIAARVAEHHRPQYWTELTLRGDYHSPFGKIEARAEAAKWLCLV*
Ga0066905_10034699823300005713Tropical Forest SoilMSDSFINWSSRVAIAGRIGERLRPQGWNEFTLRGDYQLPFGKSEARAEAAKWLCQV*
Ga0066905_10041231813300005713Tropical Forest SoilMSDSFINWSSRVAIAGRIGERHQPQGWNEFTLRGDYHLPFGKSEARAEA
Ga0066905_10045091913300005713Tropical Forest SoilNFRDPHHSRTQSTILYLRIDLRLEAPMSSSFINQTSRVAIAGRVAEHHRPWNELTLRGDYHPPFGRIEARTEAAKWLCLV*
Ga0066905_10053278033300005713Tropical Forest SoilMWDSFINWTSRVAIAGRIGERLRPQGWNELTLRGDYHPPFGKNEARAEAAKWLCQV*
Ga0066905_10062997123300005713Tropical Forest SoilMETPVSDTFINWTSRVAIAGRIGERLRAQGWNELTLRGDYHLPFGKSEARAEAAKWLCLV
Ga0066905_10071414433300005713Tropical Forest SoilMSGSFINHTSRVAIAGRVAEHQRPLCWNDLTLRGDYHPPFGKIEVQLEAAKWLCLV*
Ga0066903_10322219523300005764Tropical Forest SoilMSGSFINHTSRVAIAGRVTEHRRPLCWNDLTLRGDYHPPFGKIEARLEAAKWLCLI*
Ga0066903_10521684513300005764Tropical Forest SoilMSDTFINWTIRVAIAGRIGERLRPQGNDFTLRGDYHRPFGKSEARAEAVKWLCQV
Ga0066903_10812624223300005764Tropical Forest SoilMSGSFINHTSRVAIAGRVAEHRRPQDWNDLRLRGDYHPPFGKIEARLEAAKWLCLV*
Ga0066903_10823162513300005764Tropical Forest SoilMSDSFINQTSRVAIAGRVAEHHRPWNELTLRGDYHPPFGKIEARAE
Ga0081455_1000293323300005937Tabebuia Heterophylla RhizosphereVSIFINRTSRAAIAARVAESRRPHEWNELPMLGDYHLPFGKTEARAEAAKWLCQV*
Ga0081455_1002355823300005937Tabebuia Heterophylla RhizosphereMSNSFINWTSRVAIAGRVGERLRPQGWNEFTLRGDYHPPFGKSEARAEAAKWLCQV*
Ga0081455_1002399123300005937Tabebuia Heterophylla RhizosphereMSGTFINWTSRVAIAGRIGERLRPQGWNEFTLRGDYHPPFGKSEARAEAAKWLCQV*
Ga0081455_1024979523300005937Tabebuia Heterophylla RhizosphereMWDSFINWTSRVAIAGRVGERLRPQGWNELTLRGDYHPPFGKNEARAEAAKWLCQV*
Ga0081455_1064631313300005937Tabebuia Heterophylla RhizosphereMSDSFINWTSRVAIAGRIWERLRPQSWNELTLRGDYHPPFGKSEARAEAAKWLCQV*
Ga0081540_132169613300005983Tabebuia Heterophylla RhizosphereMSDSFINWISRVAIAGRIGERHQPQGWNEFTLRGDYHLPFGKSEARAEAAKWLCQV*
Ga0075417_1000076293300006049Populus RhizosphereMSITFINRTSRVTIAGRVAASRRPHEWNELTMLGDYHLPFGKTEARAEAAKWLCRV*
Ga0075417_1000178693300006049Populus RhizosphereMSDSFINWTSRVATAGHVGERQRHESWNELTLRGDYHAPFGKSEARAEAAKWLCQV*
Ga0075417_1014875443300006049Populus RhizosphereMSDSFINRTSRVAIAGRIAERLRPQGWKELTLRGDYHTPFGKSEARAEAAKWLCIV*
Ga0075028_10068238723300006050WatershedsFINRTSRVAIAGRVAESRRPHEWNELTMLGDYHLPFGKAEARAEAAKWLCQL*
Ga0075432_1002021243300006058Populus RhizosphereMSDSFINWTSRVAIAARIGERLRLRGWNELTLCGDYHAPFGKSEARAEAAKWLCLV*
Ga0075427_1000491153300006194Populus RhizosphereMSDSFINWTSRVAIAGHVGERQRHESWNELTLRGDYHAPFGKSEARAEAAKWLCQV*
Ga0075422_1009835023300006196Populus RhizosphereMSITFINRTSRVAIAGRVAASRRPHEWNELTMLGDYHLPFGKTEARAEAAKWLCRV*
Ga0075428_10005404983300006844Populus RhizosphereMSDSFINRTSRVAIAGRVAERLRPQGWNELTLRGDYHTPFGKSEARTEAAKWLCIV*
Ga0075428_10156182413300006844Populus RhizosphereMSITFINRTSRVAIAGRVAESRRPHEWNELTMLGDYHLPFGKTEARAEAVKWLCQV*
Ga0075430_10008168213300006846Populus RhizosphereMSDSFINRTSRVAIAGRVAERLRPQGWKELTLRGDYHTPFGKSEARAEAAKWLCVV*
Ga0075430_10043091823300006846Populus RhizosphereMSITFINRTSRVAIAGRVAERRPPHEWSELTILGDYHLPFGKAEARAEAAKWLCQV*
Ga0075431_10068735143300006847Populus RhizosphereMSDSFINRTSRVAIAGRIAERLRPQGWKELTLRGDYHTPFGKSEARAEAAKWLC
Ga0075433_1015636613300006852Populus RhizosphereEAPMSDSFINWTSRVAIAGHVGERQRHESWNELTLRGDYHAPFGKSEARAEAAKWLCQV*
Ga0075433_1091584223300006852Populus RhizosphereMSDSFINWTSRVAIAGRVGERQRHERWNELTLRGDYHAPFGKSEARAEAAKWLCQV*
Ga0075433_1131327713300006852Populus RhizosphereMSDSFINRTSRVAIAGRVAERLRPQGWNELTLRGDYHTPFGKSEARAEAAKWLCVV*
Ga0075425_10020371923300006854Populus RhizosphereMSDSFINRTSRVAIAGRVAERLRPQGWNELTLRGDYHAPFGKTEARVEAAKCLCLV*
Ga0075425_10052310043300006854Populus RhizosphereMSDSFTNHTSRVAIASRVAEHRRPLIWNDLTLRGDYHPPFGKIEARLEAAKWLCLV*
Ga0075425_10068924423300006854Populus RhizosphereMSDNFINQTSRVAISARVAEHHRPENWTELTTRGDYHQPFGKAEARTEAAKWLCQI*
Ga0075434_10074522923300006871Populus RhizosphereMSDSFINRTSRVAIAGRVAERLRPQGWNELTLRGDYHAPFGKTEARVEAAKWLCLV*
Ga0075424_10249359223300006904Populus RhizosphereMSGSFINHTSRVAIAGRVAEHQRPPCWNDLTLRGDYHPPFGKIEARLEAAKWLCLV*
Ga0075436_10009344533300006914Populus RhizosphereMSDSFINWTSRVCIAGRIGERLRLRGWNELTLCGDYHAPFGKSEARAEAAKWLCLV*
Ga0075419_1023926723300006969Populus RhizosphereMSDSFINRTSRVAIAGRIAERLRPQGWKELTLRGDYHTPFGKSEARAEAAKWLCVV*
Ga0075435_10021622413300007076Populus RhizosphereMSGSFINHTSRVAIAGRVAEHQRPQFWTDLTLRGDYHPPFGKIEARLEAAKWLCLV*
Ga0075435_10130123713300007076Populus RhizosphereMSDSFINRTSRVAIAGRVAERLRPQGWKELTLRGDYHKPFGKTEARAEAAKWLCIV*
Ga0075418_1156275723300009100Populus RhizosphereMADSFINRTSRVAIAGRVAERLRPQSWNELTLRGDYHAPFGKTEARAEAAKWLCLV*
Ga0075418_1264003413300009100Populus RhizosphereMSDSFINRTSRVAIAGRVAERLRPQGWNELTLRGDYHAPFGKTEARVEATKCLCLV*
Ga0114129_1265088323300009147Populus RhizosphereMLNTFVNWTSRVAIAGRVAGQRRADNWNELPMLGDYHLPFGNVEAKTEAAKWLCQV*
Ga0111538_1070089923300009156Populus RhizosphereMSGSFINHTSRVAIAGRVAEHRRPLIWNDLTLRGDYHPPFGKIEARLEAAKWLCLV*
Ga0075423_1079444123300009162Populus RhizosphereMSDSFINRTSRVAIAGRVADRLRPQGWNELTLRGDYHAPFGKTEARVEAAKWLCLV*
Ga0075423_1286424523300009162Populus RhizosphereMSDEFINQTSRVAISARVAEHHRPENWTELTTRGDYHQPFGKAEARTEAAKWLCQI*
Ga0105104_1054468413300009168Freshwater SedimentMSDSFINTSRVAIAGRIGERLRLRGWDELTLCGDYHAPFGKSEARAEAAKWLCLV*
Ga0126374_1020381423300009792Tropical Forest SoilMSDVFINWASRVAIAGRIGERLRPQGNDFTLRGDYHRPFGKSEARAEAVKWLCQV*
Ga0126380_1007061523300010043Tropical Forest SoilMSDSFINQTSRVAIAARVAEHHRPQYWTELTLRGDYHPPFGKIEARAEAAKWLCLV*
Ga0126380_1061160423300010043Tropical Forest SoilMSDSFINWSSRVAIAGRIGERLRPQGWNEFTLRGDYHLPFGKSEARAEAAKWLCQV*
Ga0126380_1187509413300010043Tropical Forest SoilMSDSFINRTSRVAIAARVLERLRPQGWNEFTLRGDYHPPFGKSEARAEAAKWLCQV*
Ga0126382_1042342523300010047Tropical Forest SoilTSRVAIAGRIAERLWNELSLRGDYHTPFGKTEARAEATKWLCLI*
Ga0126382_1081632713300010047Tropical Forest SoilMLDSFINRTSRVAIAGRIGERLRPQGWNELTLRGDYHPPSGKSEARAEAAKWLCLV*
Ga0126382_1152724413300010047Tropical Forest SoilMSDSFINWSSRVAIAGRIGERHQPQGWNEFTLRGDYHLPFGKSEARAEAAKWLCQV*
Ga0126370_1004250843300010358Tropical Forest SoilMSDTFINWTIRVAIAGRIGERLRPQGNDFTLRGDYHRPFGKSEARAEAVKWLCQV*
Ga0126376_1006018543300010359Tropical Forest SoilMSDMFINWASRVAIAGRIGERLRPQGNDFTLRGDYHRPFGKSEARAEAVKWLCQV*
Ga0126376_1102157913300010359Tropical Forest SoilMWDSFINWTSRVAIAGRIGERLRPQGWNELTLRGDYHPPFGKNEARAEAAK
Ga0126372_1273313913300010360Tropical Forest SoilMSDSFINQTSRVAIAGRVAEHHRPWNELTLRGDYHPPFGRIEARTEAAKWLCLV*
Ga0126377_1199769813300010362Tropical Forest SoilMSDSFINRTSRVTIAARVLERLRPQGWNEFTLRGDYHPPFGKSEARAEAAKWLCQV*
Ga0126379_1326977723300010366Tropical Forest SoilMSGSFINHTSRVAIAGRVAEHRRPQDWNDLRLRGDYHSPFGKIEARL
Ga0105239_1184993813300010375Corn RhizosphereMSASFINHTSRVAIAGRVAEHRRPLIWNDLTLRGDYHPPFGKIEARLEAAKWLCLV*
Ga0126381_10169436013300010376Tropical Forest SoilIDSRLEAPMSDSFINQTSRVAIAGRVAEHHRPWNELTLRGDYHPPFGKIEARAEAAKWLFLV*
Ga0126381_10219175013300010376Tropical Forest SoilMWDMFINWASRVAIAGRIGERLRPQGNDFTLRGDYHRPFGKSEARAEAVKWLCQV*
Ga0134123_1331105213300010403Terrestrial SoilMSITFINRTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARAEAAKWLCQV*
Ga0124844_129775123300010868Tropical Forest SoilMSDVFINWASRVAIAGRIGERLRPQGNDFTLRGDYYRPFGKSEARAEAVKWLCQV*
Ga0162653_10000466833300012937SoilMSITFINRTSRVAIAGRVAEQRRPETTDELTTPGDYHLPFGKEEARAEAAKWLCQV*
Ga0126375_1029124913300012948Tropical Forest SoilMSGSFINHTSRVAIAGRVAEHQRPLCWNDLTLRGDYHAPFGKIEARLEAAKWLCLV*
Ga0126375_1137571713300012948Tropical Forest SoilMSDSFINWSSRVAIVGRIGERLRPQGWNEFILRGDYHRPFGKSEARAEAAKWLCQV*
Ga0126375_1142738213300012948Tropical Forest SoilSRVAIAGRVAKHQGPQHWNELTLRGDYHPPFGKIEARAEAAKWFCLV*
Ga0164298_1001612423300012955SoilMSDSFINQTRRVALAGRVAEHHRPQYWTELTLRGDYHAPFGKIEARAEAAKWLCLV*
Ga0164303_1126913713300012957SoilMSNTFVNWTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARTEAAKWLCQV*
Ga0164302_1019483123300012961SoilMSITFINRTSRVAIAGRLAEWRRQPQNWNALNMLGDYHLPFGKAEARAEAAKWLCQV*
Ga0126369_1095350013300012971Tropical Forest SoilSRVAIAGRVAERHRPQYWNELTFRGDYHPPFGKIEARAEAAKWLCLI*
Ga0126369_1263364623300012971Tropical Forest SoilMSDTFINWTSRVAIAGRIGERLRPQGNEFTLRGDYHRPFGKSEARAEAV
Ga0164304_1013701313300012986SoilMSITFINRTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARAEAVKWLCQV
Ga0164305_1140019923300012989SoilMSNTFVNWTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARAEAVKWLCQV*
Ga0163162_1258916813300013306Switchgrass RhizosphereMSASFINHTSRVAIAGRVAEHRRPLCWNDLKLRGDYHPPFGKIEARLEAAKWLCLV*
Ga0157375_1264471713300013308Miscanthus RhizosphereMSGSFINHTSRVAIAGRVAEHQRPQCWNDLTLRGDYHPPFGKIEARLEAAKWLCLV*
Ga0132258_1084676513300015371Arabidopsis RhizosphereMSGSFINHTSRVAIAGRVAEHLRPQFWTYLTLRGDYHPPFGKIEARLEAAKWLCLV*
Ga0132258_1094911843300015371Arabidopsis RhizosphereMSDDFINQTSRVAISARVAEHHRPENWTELTTTRGDYHQPFGKAEARTEAAKWLCQI*
Ga0132258_1204579413300015371Arabidopsis RhizosphereMSNTFVNWSSRVAIAGRVAERRRLHEGNELTIQGDYPLPFGKAEARAEAAKWLCQV*
Ga0132256_10326660313300015372Arabidopsis RhizosphereMSGSFINHTSRVAIAGRVAEHQRPLFWNDLTLPGDYHPPFGKIEARLEAAKWLCLV*
Ga0132257_10057248533300015373Arabidopsis RhizosphereMSASFINHTSRVAIAGRVAEHQRPPCWNDLTLRGDYHPPFGKIEARLEAAKWLCLV*
Ga0182040_1000014643300016387SoilMSDSFINQTSRVAIAGRVSEHHTPWNELTLRGDYHPPFGKIEARAEAAKWLCLV
Ga0187773_1021025113300018064Tropical PeatlandMSTFVNWTSRVAVAGRIAERRCADNWNELPMRGDYHVPFGKAEARAEAAKWLWQV
Ga0184611_109470713300018067Groundwater SedimentMSNTFMNWTSWVAIAARIAERRRPQNWNELTPGDYHQPFGKAEARAEAAKWLCQV
Ga0184635_1018750723300018072Groundwater SedimentMSNTFMNWTSWVAIAARIAERRRPQNWNELTMPGDYHQPFGKAEARAEAAKWLCQV
Ga0184635_1028491813300018072Groundwater SedimentPMSITFINRTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARAEAAKWLCQV
Ga0184625_1006983923300018081Groundwater SedimentMSITFINRTSRVAIAGRVAEWRRPHEWNELTMLGDYHLPFGKAEARAEAAKWLCQV
Ga0184625_1014717323300018081Groundwater SedimentMSNTFMNWTSWVAIAARIAERRRPQNWNELTMPGDFHQPFGKAEARAEAAKWLCQV
Ga0184625_1038293323300018081Groundwater SedimentMSDSFVNWTSRVAIAGRIVKRLRPQGWNEFTLRGDYHPPFGKSEARAEAAKWLCQV
Ga0184644_108413813300019269Groundwater SedimentGAPMSITFINRTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARAEAAKWLCQV
Ga0193705_108618523300019869SoilSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARAEAAKWLCEV
Ga0193722_107349323300019877SoilMSDRFINWTSRVAIAARIGERLRPQGWNEFTLRGDYHPPFGKSEARA
Ga0210381_1012947113300021078Groundwater SedimentMSITFINRTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARTEAAKWLCQV
Ga0193719_1005835643300021344SoilMSDNFINWTSRVAIAGRVGERLRPQGWNEAFRGDYHPPFGKAEARAEAAKWIWQV
Ga0193719_1019360123300021344SoilMSITFINRTSRVAIAGRVAEWRGQPQNWNELNMLGDYHLPFGKAEARTEAAKWLCQV
Ga0126371_1002861763300021560Tropical Forest SoilMSDSFINQTSRVAIAGRVAERHRPQYWNELTFRGDYHPPFGKIEARAEAAKWLCLI
Ga0126371_1084047733300021560Tropical Forest SoilSLINQTSRVAIAARVPEHHRPQYWTELTLRGDYHSPFGKIVARAEAAKWLCLV
Ga0126371_1134506713300021560Tropical Forest SoilMSDSFINQTSRVAIAGRVAEHHRPWNELTLRGDYHPPFGKIEARAEAAKWLCLV
Ga0222624_134927613300021951Groundwater SedimentALMSITFINRTSRVAIAGCVAEWRRQPQNWNELTMLGDYHLPFGKAEARAEAAKWLCQV
Ga0222624_135146513300021951Groundwater SedimentLGAPMSITFVNGTSRVAIGGCVAGSRRPHEWNELTMLGDYHLPFGKAEARAEAAKWLCQV
Ga0222625_148570123300022195Groundwater SedimentGLGAPMSITFINRTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARAEAAKWLCQV
Ga0222623_1033858723300022694Groundwater SedimentMSDSFINRTSRVAIAGRIGERLRPQGWNEFTLRGDYHLPFGESEARAQAAKWLCLV
Ga0222622_1008698313300022756Groundwater SedimentVLVSIRVLQRLEVTMSNTFRNWTSRVAIAGRIADRRRLQDWNELTMPGDYHGPFGKTVARAEAAKWLWQI
Ga0207663_1052685933300025916Corn, Switchgrass And Miscanthus RhizosphereMSDDFINQTSRVAIAGRVAEHHRPQYWTELTLRGDYHAPFGKIEARAEAAKWLCLV
Ga0207712_1114638423300025961Switchgrass RhizosphereMSGSFINHTSRVAIAGRVAEHQRPLCWNDLTLRGDYHPPFGKIEARLEAAKWLCLV
Ga0209814_1000316053300027873Populus RhizosphereMSDSFINWTSRVAIAGHVGERQRHESWNELTLRGDYHAPFGKSEARAEAAKWLCQV
Ga0209814_1006934433300027873Populus RhizosphereMSDSFINWTSRVAIAGRIGERLRLRGWNELTLCGDYHAPFGKSEARAEAAKWLCLV
Ga0209481_1035903023300027880Populus RhizosphereAFFNRTSRVAIAGRVAERLRPQGWKELTLRGDYHTPFGKSEARAEAAKWLCVV
Ga0207428_1005570133300027907Populus RhizosphereMSDSFINRTSRVAIAGRVAERLRPQGWKELTLRGDYHTPFGKSEARAEAAKWLCVV
Ga0209382_1208039523300027909Populus RhizosphereMSITFINRTSRVAIAGRVAESRRPHEWNELTMLGDYHLPFGKTEARAEAVKWLCQV
Ga0307295_1007156813300028708SoilMSITFINRTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARAEAAKWLCQV
Ga0307282_1038354713300028784SoilSAVLVSIRVLQRLEVTMSNTFRNWTSRVAIAGRIADRRRLQDWNELTMPGDYHGPFGKTVARAEAAKWLWQI
Ga0307302_1016790213300028814SoilMSDSFINWNSRVAIAGRVGERQRHESWNELTLRGDYHPPFGKSEARAEAAKWLCQV
Ga0307312_1025140133300028828SoilWEGPMSDSFINRASRVAIAGRIGERLRPQGWNELTLRGDHHPPFGKSEARAEAAKWLCQV
Ga0075394_1196478723300030969SoilSRVAIAGRVAEWRRQPQSWNELNMLGDYHLPFGKAEARTEAAKWLCQV
Ga0308190_120026713300030993SoilLGAPMSITFINRTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARAEAAKWLCQ
Ga0308193_106967213300031096SoilLGAPMSITLINRTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARAEAAKWLCE
Ga0307498_1000225863300031170SoilMSNTFVNWTSWVAIAGRIAEERRVDRNELPMLGDYHLPFGKVEAKAEAAKWLCQV
Ga0307498_1015539723300031170SoilMSVSFINWTSRVAIAGRVAERRRPQGWNELTLRGDYHAPFGKAEAWA
Ga0307498_1028300923300031170SoilLQSEPEASMSNTFVNWTSWVAIAGRVAEQRHADRNELPMLGDYHLPFGKVEAKAEAEKWLCQV
(restricted) Ga0255310_1008587023300031197Sandy SoilMNTFINWTSQVAIASRIVEERREQDWNELKLLGDYHPPFGKDEARAEAAKWLCQV
Ga0307495_1019063223300031199SoilLQSEPEASMSNTFVNWTSWVAIAGRVAEQRRADRNELPMLGDYHLPFGKVEAKAEAAKWLCQV
Ga0307497_1047872313300031226SoilMSNTFVNWTSWVAIAGRVAEQRRADRDELQMLGDYHLPFGKGEAKAEAAKWLCQV
Ga0170824_10951719023300031231Forest SoilMSVTFINWTSRVAIAARVAERRRPQGWNELTLRGDYHAPFGKAEARAEAEKWIWQI
Ga0170820_1084221713300031446Forest SoilMSSTYVNWSSRVAIAGRVAERRRPHEWNELTIQGDYHLRFGKAEARAAAAKWLCQI
Ga0170819_1483101113300031469Forest SoilQGLGAPMSITFINRTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARAEAAKWLCQV
Ga0318541_10000149253300031545SoilMSDSFINQTSRVAIAGRVSEHHRPWNELTLRGDYHPPFGKIEARAEAAKWLCLV
Ga0310887_1112756513300031547SoilMSITFINRTSRVAIAGRLAEWRRQPQNWNELNMLGDYHLPFGKAEARAEAAKWLCQV
Ga0318561_1004983553300031679SoilYLRIDSRLEAPMSDSFINQTSRVAIAGRVAERHRPQYWNELTFRGDYHPPFGKIEARAEAAKWLCLI
Ga0307469_1135065923300031720Hardwood Forest SoilMSITFINRTSRAAIAGRVAEWRRPHEWNELTMLGDYHLPFGKAEARAEAAKWLCQV
Ga0307469_1158983513300031720Hardwood Forest SoilMSITFINRTSRVAIAGRVAESRRPHEWNELTMLGDYHLPFGKAEARAEAAKWLCQL
Ga0318500_1012215633300031724SoilILYLRIDSRLEAPMSDSFINQTSRVAIAGRVAERHRPQYWNELTFRGDYHPPFGKIEARAEAAKWLCLI
Ga0307468_10098557423300031740Hardwood Forest SoilMSITFINRTSRAAIASRVAEWRRPHEWNELTMLGDYHLPFGKAEARAEAAKWLCQV
Ga0318527_1034134413300031859SoilSRLEAPMSDSFINQTSRVAIAGRVAERHRPQYWNELTFRGDYHPPFGKIEARAEAAKWLCLI
Ga0307471_10066642723300032180Hardwood Forest SoilMSNTFVNWTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKAEARTEAAKWLCQV
Ga0326726_1032487013300033433Peat SoilMFTFINQTSRAAIEGHIAQRRGANDWNELTTRGDHHLPFGKAEARAEAAKWLCQV
Ga0326726_1193736623300033433Peat SoilMSNTYVNWSSRVAIAGRVAERRRQPQNWNELKMLGDYHLPFGKAEARTEAAKWLCQV
Ga0326723_0461214_394_5643300034090Peat SoilMSNTFMNWTSWVAVAARIAERRRPQNWNELTTPGDYHQPFGKAEARAEAAKWLCQV
Ga0370545_096533_449_6223300034643SoilMSITFINRTSRVAIAGCVAEWRRQPQNWNELNMLGDYHLPFGKAEARAEAAKWLCQV
Ga0370541_021149_14_1873300034680SoilMSITFINRTSRVAIAGRVAEWRRQPQNWNELNMLGDYHLPFGKTEARTEAAKWLCQV
Ga0370546_031901_566_7513300034681SoilIGAPMSITFINRTSRVASSGRVSEWRRAPQNWNELNMLGDYHLPFGKAEARAEAAKWLCQ


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